data_21B # _chem_comp.id 21B _chem_comp.name Nortriptyline _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 N" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N-methylpropan-1-amine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-08-14 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 263.377 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 21B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4M48 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 21B C16 C16 C 0 1 N N N -43.098 -1.590 52.125 5.116 2.334 -1.111 C16 21B 1 21B N N N 0 1 N N N -43.098 -2.738 53.001 4.354 1.444 -0.225 N 21B 2 21B C15 C15 C 0 1 N N N -42.972 -2.555 54.431 2.936 1.826 -0.187 C15 21B 3 21B C14 C14 C 0 1 N N N -41.612 -3.009 54.961 2.177 0.879 0.744 C14 21B 4 21B C13 C13 C 0 1 N N N -40.607 -1.909 54.723 0.722 1.271 0.782 C13 21B 5 21B C4 C4 C 0 1 N N N -39.407 -1.754 55.316 -0.223 0.359 0.528 C4 21B 6 21B C3 C3 C 0 1 Y N N -38.627 -0.564 54.875 0.161 -1.063 0.390 C3 21B 7 21B C17 C17 C 0 1 Y N N -39.042 0.731 55.165 1.070 -1.552 1.342 C17 21B 8 21B C18 C18 C 0 1 Y N N -38.271 1.795 54.712 1.466 -2.869 1.327 C18 21B 9 21B C C C 0 1 Y N N -37.111 1.554 53.975 0.953 -3.719 0.363 C 21B 10 21B C5 C5 C 0 1 Y N N -38.794 -2.652 56.360 -1.632 0.793 0.396 C5 21B 11 21B C10 C10 C 0 1 Y N N -39.541 -2.977 57.489 -2.310 1.389 1.456 C10 21B 12 21B C9 C9 C 0 1 Y N N -39.020 -3.788 58.492 -3.623 1.782 1.274 C9 21B 13 21B C8 C8 C 0 1 Y N N -37.724 -4.273 58.393 -4.242 1.581 0.053 C8 21B 14 21B C7 C7 C 0 1 Y N N -36.966 -3.937 57.280 -3.561 0.985 -0.994 C7 21B 15 21B C6 C6 C 0 1 Y N N -37.482 -3.134 56.265 -2.246 0.586 -0.814 C6 21B 16 21B C11 C11 C 0 1 N N N -36.519 -2.862 55.124 -1.503 -0.079 -1.932 C11 21B 17 21B C12 C12 C 0 1 N N N -37.127 -2.243 53.876 -1.289 -1.551 -1.710 C12 21B 18 21B C2 C2 C 0 1 Y N N -37.486 -0.804 54.147 -0.338 -1.902 -0.586 C2 21B 19 21B C1 C1 C 0 1 Y N N -36.710 0.252 53.686 0.067 -3.241 -0.575 C1 21B 20 21B H1 H1 H 0 1 N N N -43.202 -1.924 51.082 6.162 2.029 -1.120 H1 21B 21 21B H2 H2 H 0 1 N N N -43.939 -0.931 52.385 4.711 2.274 -2.121 H2 21B 22 21B H3 H3 H 0 1 N N N -42.152 -1.040 52.241 5.040 3.360 -0.749 H3 21B 23 21B H4 H4 H 0 1 N N N -43.961 -3.220 52.846 4.462 0.480 -0.501 H4 21B 24 21B H6 H6 H 0 1 N N N -43.103 -1.488 54.663 2.845 2.848 0.181 H6 21B 25 21B H7 H7 H 0 1 N N N -43.759 -3.138 54.932 2.516 1.763 -1.191 H7 21B 26 21B H8 H8 H 0 1 N N N -41.685 -3.216 56.039 2.269 -0.143 0.376 H8 21B 27 21B H9 H9 H 0 1 N N N -41.295 -3.920 54.433 2.597 0.942 1.748 H9 21B 28 21B H10 H10 H 0 1 N N N -40.881 -1.160 53.994 0.443 2.288 1.014 H10 21B 29 21B H11 H11 H 0 1 N N N -39.945 0.907 55.731 1.463 -0.886 2.095 H11 21B 30 21B H12 H12 H 0 1 N N N -38.570 2.809 54.931 2.171 -3.236 2.059 H12 21B 31 21B H13 H13 H 0 1 N N N -36.518 2.386 53.625 1.247 -4.758 0.347 H13 21B 32 21B H14 H14 H 0 1 N N N -40.545 -2.592 57.588 -1.818 1.541 2.405 H14 21B 33 21B H15 H15 H 0 1 N N N -39.626 -4.041 59.350 -4.166 2.245 2.085 H15 21B 34 21B H16 H16 H 0 1 N N N -37.312 -4.901 59.169 -5.267 1.892 -0.085 H16 21B 35 21B H17 H17 H 0 1 N N N -35.954 -4.306 57.199 -4.051 0.832 -1.944 H17 21B 36 21B H18 H18 H 0 1 N N N -36.059 -3.819 54.836 -2.065 0.058 -2.856 H18 21B 37 21B H19 H19 H 0 1 N N N -35.741 -2.178 55.495 -0.531 0.402 -2.040 H19 21B 38 21B H20 H20 H 0 1 N N N -38.033 -2.800 53.596 -2.256 -2.007 -1.496 H20 21B 39 21B H21 H21 H 0 1 N N N -36.399 -2.290 53.053 -0.906 -1.986 -2.633 H21 21B 40 21B H22 H22 H 0 1 N N N -35.813 0.067 53.114 -0.325 -3.916 -1.321 H22 21B 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 21B C16 N SING N N 1 21B N C15 SING N N 2 21B C1 C DOUB Y N 3 21B C1 C2 SING Y N 4 21B C12 C2 SING N N 5 21B C12 C11 SING N N 6 21B C C18 SING Y N 7 21B C2 C3 DOUB Y N 8 21B C15 C14 SING N N 9 21B C18 C17 DOUB Y N 10 21B C13 C14 SING N N 11 21B C13 C4 DOUB N N 12 21B C3 C17 SING Y N 13 21B C3 C4 SING N N 14 21B C11 C6 SING N N 15 21B C4 C5 SING N N 16 21B C6 C5 DOUB Y N 17 21B C6 C7 SING Y N 18 21B C5 C10 SING Y N 19 21B C7 C8 DOUB Y N 20 21B C10 C9 DOUB Y N 21 21B C8 C9 SING Y N 22 21B C16 H1 SING N N 23 21B C16 H2 SING N N 24 21B C16 H3 SING N N 25 21B N H4 SING N N 26 21B C15 H6 SING N N 27 21B C15 H7 SING N N 28 21B C14 H8 SING N N 29 21B C14 H9 SING N N 30 21B C13 H10 SING N N 31 21B C17 H11 SING N N 32 21B C18 H12 SING N N 33 21B C H13 SING N N 34 21B C10 H14 SING N N 35 21B C9 H15 SING N N 36 21B C8 H16 SING N N 37 21B C7 H17 SING N N 38 21B C11 H18 SING N N 39 21B C11 H19 SING N N 40 21B C12 H20 SING N N 41 21B C12 H21 SING N N 42 21B C1 H22 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 21B SMILES ACDLabs 12.01 "c3cc2c(/C(c1c(cccc1)CC2)=C/CCNC)cc3" 21B InChI InChI 1.03 "InChI=1S/C19H21N/c1-20-14-6-11-19-17-9-4-2-7-15(17)12-13-16-8-3-5-10-18(16)19/h2-5,7-11,20H,6,12-14H2,1H3" 21B InChIKey InChI 1.03 PHVGLTMQBUFIQQ-UHFFFAOYSA-N 21B SMILES_CANONICAL CACTVS 3.385 CNCCC=C1c2ccccc2CCc3ccccc13 21B SMILES CACTVS 3.385 CNCCC=C1c2ccccc2CCc3ccccc13 21B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CNCCC=C1c2ccccc2CCc3c1cccc3 21B SMILES "OpenEye OEToolkits" 1.7.6 CNCCC=C1c2ccccc2CCc3c1cccc3 # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 21B "SYSTEMATIC NAME" ACDLabs 12.01 "3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N-methylpropan-1-amine" 21B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-(5,6-dihydrodibenzo[1,2-a:1',2'-e][7]annulen-11-ylidene)-N-methyl-propan-1-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 21B "Create component" 2013-08-14 RCSB 21B "Initial release" 2013-09-18 RCSB 21B "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 21B _pdbx_chem_comp_synonyms.name "3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N-methylpropan-1-amine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##