data_24O # _chem_comp.id 24O _chem_comp.name "(1R,2R)-2-[(1S,2S)-2-amino-1-hydroxy-4-methylpentyl]-4-oxocyclopentanecarboxylic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H21 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-02-15 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 243.299 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 24O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1YM2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 24O N N N 0 1 N N N Y Y N 29.739 5.798 15.780 -2.712 -0.914 1.847 N 24O 1 24O CA C41 C 0 1 N N S Y N N 30.837 6.123 14.872 -1.812 -0.538 0.749 C41 24O 2 24O C43 C43 C 0 1 N N S Y N N 31.501 4.884 14.264 -0.400 -0.326 1.296 C43 24O 3 24O O45 O45 O 0 1 N N N N N N 32.067 4.032 15.303 0.023 -1.501 1.991 O45 24O 4 24O C47 C47 C 0 1 N N R Y N N 30.520 4.081 13.383 0.560 -0.046 0.138 C47 24O 5 24O C49 C49 C 0 1 N N R Y N N 31.384 3.200 12.447 1.995 0.129 0.668 C49 24O 6 24O C51 C51 C 0 1 N N N N N N 30.587 1.889 12.259 2.833 -0.983 0.004 C51 24O 7 24O C54 C54 C 0 1 N N N N N N 29.521 1.949 13.330 2.061 -1.332 -1.264 C54 24O 8 24O C55 C55 C 0 1 N N N N N N 29.583 3.162 14.203 0.604 -1.255 -0.820 C55 24O 9 24O O58 O58 O 0 1 N N N N N N 28.674 1.078 13.467 2.498 -1.603 -2.357 O58 24O 10 24O C C59 C 0 1 N N N Y N Y 31.458 3.883 11.078 2.530 1.484 0.281 C59 24O 11 24O O O60 O 0 1 N N N Y N Y 30.538 4.603 10.735 1.842 2.245 -0.357 O60 24O 12 24O C92 C92 C 0 1 N N N N N N 31.886 6.952 15.639 -2.309 0.758 0.104 C92 24O 13 24O C95 C95 C 0 1 N N N N N N 31.272 8.325 16.021 -3.697 0.529 -0.496 C95 24O 14 24O C97 C97 C 0 1 N N N N N N 32.265 9.092 16.913 -4.238 1.850 -1.048 C97 24O 15 24O C98 C98 C 0 1 N N N N N N 31.039 9.147 14.731 -3.601 -0.495 -1.629 C98 24O 16 24O H H39 H 0 1 N N N Y Y N 29.346 6.642 16.144 -2.463 -1.816 2.226 H39 24O 17 24O HA H41 H 0 1 N N N Y N N 30.416 6.696 14.033 -1.798 -1.332 0.003 H41 24O 18 24O H43 H43 H 0 1 N N N Y N N 32.317 5.238 13.618 -0.399 0.521 1.982 H43 24O 19 24O H45 H45 H 0 1 N N N N N N 32.473 3.272 14.903 0.046 -2.296 1.441 H45 24O 20 24O H47 H47 H 0 1 N N N Y N N 29.875 4.786 12.838 0.247 0.849 -0.400 H47 24O 21 24O H49 H49 H 0 1 N N N Y N N 32.394 3.036 12.852 2.011 0.015 1.752 H49 24O 22 24O H511 H511 H 0 0 N N N N N N 30.142 1.833 11.255 3.828 -0.613 -0.245 H511 24O 23 24O H512 H512 H 0 0 N N N N N N 31.232 1.007 12.386 2.901 -1.852 0.659 H512 24O 24 24O H551 H551 H 0 0 N N N N N N 29.988 2.937 15.201 0.317 -2.167 -0.296 H551 24O 25 24O H552 H552 H 0 0 N N N N N N 28.592 3.612 14.362 -0.047 -1.086 -1.677 H552 24O 26 24O H921 H921 H 0 0 N N N N N N 32.184 6.415 16.552 -2.364 1.541 0.859 H921 24O 27 24O H922 H922 H 0 0 N N N N N N 32.769 7.108 15.002 -1.618 1.060 -0.683 H922 24O 28 24O H95 H95 H 0 1 N N N N N N 30.323 8.171 16.555 -4.370 0.155 0.275 H95 24O 29 24O H971 H971 H 0 0 N N N N N N 31.835 10.067 17.187 -3.612 2.181 -1.877 H971 24O 30 24O H972 H972 H 0 0 N N N N N N 32.464 8.510 17.825 -5.260 1.705 -1.400 H972 24O 31 24O H973 H973 H 0 0 N N N N N N 33.206 9.248 16.364 -4.228 2.604 -0.262 H973 24O 32 24O H981 H981 H 0 0 N N N N N N 30.604 10.123 14.991 -3.216 -1.436 -1.236 H981 24O 33 24O H982 H982 H 0 0 N N N N N N 31.999 9.300 14.215 -4.590 -0.658 -2.057 H982 24O 34 24O H983 H983 H 0 0 N N N N N N 30.349 8.603 14.069 -2.928 -0.122 -2.401 H983 24O 35 24O H2 H2 H 0 1 N Y N Y Y N 29.035 5.290 15.283 -2.718 -0.208 2.568 H2 24O 36 24O OXT OXT O 0 1 N Y N Y N Y ? ? ? 3.771 1.844 0.644 OXT 24O 37 24O HXT HXT H 0 1 N Y N Y N Y ? ? ? 4.070 2.723 0.373 HXT 24O 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 24O N CA SING N N 1 24O N H SING N N 2 24O CA C43 SING N N 3 24O CA C92 SING N N 4 24O CA HA SING N N 5 24O C43 O45 SING N N 6 24O C43 C47 SING N N 7 24O C43 H43 SING N N 8 24O O45 H45 SING N N 9 24O C47 C49 SING N N 10 24O C47 C55 SING N N 11 24O C47 H47 SING N N 12 24O C49 C51 SING N N 13 24O C49 C SING N N 14 24O C49 H49 SING N N 15 24O C51 C54 SING N N 16 24O C51 H511 SING N N 17 24O C51 H512 SING N N 18 24O C54 C55 SING N N 19 24O C54 O58 DOUB N N 20 24O C55 H551 SING N N 21 24O C55 H552 SING N N 22 24O C O DOUB N N 23 24O C92 C95 SING N N 24 24O C92 H921 SING N N 25 24O C92 H922 SING N N 26 24O C95 C97 SING N N 27 24O C95 C98 SING N N 28 24O C95 H95 SING N N 29 24O C97 H971 SING N N 30 24O C97 H972 SING N N 31 24O C97 H973 SING N N 32 24O C98 H981 SING N N 33 24O C98 H982 SING N N 34 24O C98 H983 SING N N 35 24O N H2 SING N N 36 24O C OXT SING N N 37 24O OXT HXT SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 24O SMILES ACDLabs 12.01 "O=C(O)C1CC(=O)CC1C(O)C(N)CC(C)C" 24O SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](N)[C@@H](O)[C@@H]1CC(=O)C[C@H]1C(O)=O" 24O SMILES CACTVS 3.370 "CC(C)C[CH](N)[CH](O)[CH]1CC(=O)C[CH]1C(O)=O" 24O SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)C[C@@H]([C@H]([C@@H]1CC(=O)C[C@H]1C(=O)O)O)N" 24O SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)CC(C(C1CC(=O)CC1C(=O)O)O)N" 24O InChI InChI 1.03 "InChI=1S/C12H21NO4/c1-6(2)3-10(13)11(15)8-4-7(14)5-9(8)12(16)17/h6,8-11,15H,3-5,13H2,1-2H3,(H,16,17)/t8-,9-,10+,11+/m1/s1" 24O InChIKey InChI 1.03 BYQBKCJRZDGCMJ-ZNSHCXBVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 24O "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2R)-2-[(1S,2S)-2-amino-1-hydroxy-4-methylpentyl]-4-oxocyclopentanecarboxylic acid" 24O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(1R,2R)-2-[(1S,2S)-2-azanyl-1-hydroxy-4-methyl-pentyl]-4-oxo-cyclopentane-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 24O "Create component" 2011-02-15 RCSB 24O "Modify descriptor" 2011-06-04 RCSB 24O "Modify backbone" 2023-11-03 PDBE #