data_29S # _chem_comp.id 29S _chem_comp.name Bazedoxifene _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H34 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-{4-[2-(azepan-1-yl)ethoxy]benzyl}-2-(4-hydroxyphenyl)-3-methyl-1H-indol-5-ol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-09-13 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 470.603 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 29S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4MNZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 29S CAE CAE C 0 1 N N N -10.128 -10.435 28.816 5.523 0.712 -1.297 CAE 29S 1 29S CAD CAD C 0 1 N N N -11.034 -9.571 27.939 5.699 -0.476 -2.267 CAD 29S 2 29S CAC CAC C 0 1 N N N -10.490 -9.462 26.496 7.168 -0.784 -2.406 CAC 29S 3 29S CAB CAB C 0 1 N N N -8.963 -9.663 26.437 7.644 -1.865 -1.416 CAB 29S 4 29S CAA CAA C 0 1 N N N -8.173 -8.584 27.233 7.032 -1.675 -0.018 CAA 29S 5 29S CAG CAG C 0 1 N N N -8.686 -8.430 28.707 6.999 -0.221 0.381 CAG 29S 6 29S NAF NAF N 0 1 N N N -8.983 -9.707 29.395 5.668 0.318 0.037 NAF 29S 7 29S CAH CAH C 0 1 N N N -9.312 -9.371 30.778 5.287 1.403 0.951 CAH 29S 8 29S CAI CAI C 0 1 N N N -8.372 -10.076 31.723 3.762 1.518 0.997 CAI 29S 9 29S OAJ OAJ O 0 1 N N N -7.106 -10.055 31.113 3.210 0.319 1.544 OAJ 29S 10 29S CAK CAK C 0 1 Y N N -6.131 -9.426 31.854 1.857 0.257 1.655 CAK 29S 11 29S CAL CAL C 0 1 Y N N -6.454 -8.859 33.084 1.254 -0.877 2.178 CAL 29S 12 29S CAM CAM C 0 1 Y N N -5.460 -8.221 33.818 -0.122 -0.937 2.290 CAM 29S 13 29S CAP CAP C 0 1 Y N N -4.796 -9.363 31.367 1.077 1.332 1.252 CAP 29S 14 29S CAO CAO C 0 1 Y N N -3.817 -8.697 32.104 -0.298 1.267 1.367 CAO 29S 15 29S CAN CAN C 0 1 Y N N -4.158 -8.118 33.353 -0.897 0.132 1.883 CAN 29S 16 29S CAQ CAQ C 0 1 N N N -3.229 -7.470 34.178 -2.397 0.064 2.006 CAQ 29S 17 29S NAR NAR N 0 1 Y N N -2.003 -7.134 33.400 -2.963 -0.494 0.775 NAR 29S 18 29S CAS CAS C 0 1 Y N N -1.794 -6.032 32.641 -3.187 -1.836 0.541 CAS 29S 19 29S CBD CBD C 0 1 Y N N -2.573 -4.955 32.372 -2.978 -2.981 1.301 CBD 29S 20 29S CBE CBE C 0 1 Y N N -2.102 -3.958 31.536 -3.309 -4.217 0.791 CBE 29S 21 29S CBF CBF C 0 1 Y N N -0.813 -4.089 31.005 -3.853 -4.335 -0.486 CBF 29S 22 29S OBI OBI O 0 1 N N N -0.285 -3.141 30.193 -4.173 -5.563 -0.974 OBI 29S 23 29S CBG CBG C 0 1 Y N N -0.047 -5.199 31.302 -4.069 -3.211 -1.257 CBG 29S 24 29S CAT CAT C 0 1 Y N N -0.561 -6.134 32.102 -3.737 -1.951 -0.749 CAT 29S 25 29S CAU CAU C 0 1 Y N N -0.034 -7.259 32.540 -3.831 -0.592 -1.279 CAU 29S 26 29S CBH CBH C 0 1 N N N 1.381 -7.693 32.129 -4.359 -0.191 -2.633 CBH 29S 27 29S CAV CAV C 0 1 Y N N -0.909 -7.870 33.339 -3.357 0.241 -0.319 CAV 29S 28 29S CAW CAW C 0 1 Y N N -0.831 -9.034 33.987 -3.269 1.712 -0.434 CAW 29S 29 29S CAX CAX C 0 1 Y N N -0.175 -9.166 35.213 -2.770 2.294 -1.601 CAX 29S 30 29S CAY CAY C 0 1 Y N N -0.166 -10.399 35.852 -2.689 3.667 -1.704 CAY 29S 31 29S CAZ CAZ C 0 1 Y N N -0.827 -11.476 35.268 -3.104 4.470 -0.650 CAZ 29S 32 29S OBC OBC O 0 1 N N N -0.850 -12.690 35.845 -3.024 5.822 -0.756 OBC 29S 33 29S CBA CBA C 0 1 Y N N -1.479 -11.349 34.068 -3.602 3.895 0.512 CBA 29S 34 29S CBB CBB C 0 1 Y N N -1.471 -10.130 33.435 -3.690 2.523 0.621 CBB 29S 35 29S H1 H1 H 0 1 N N N -10.731 -10.843 29.640 6.270 1.472 -1.526 H1 29S 36 29S H2 H2 H 0 1 N N N -9.739 -11.261 28.203 4.530 1.138 -1.435 H2 29S 37 29S H3 H3 H 0 1 N N N -11.097 -8.563 28.374 5.180 -1.349 -1.873 H3 29S 38 29S H4 H4 H 0 1 N N N -12.037 -10.021 27.910 5.286 -0.215 -3.242 H4 29S 39 29S H5 H5 H 0 1 N N N -10.732 -8.465 26.100 7.362 -1.127 -3.423 H5 29S 40 29S H6 H6 H 0 1 N N N -10.973 -10.231 25.875 7.738 0.129 -2.229 H6 29S 41 29S H7 H7 H 0 1 N N N -8.724 -10.652 26.856 7.358 -2.845 -1.798 H7 29S 42 29S H8 H8 H 0 1 N N N -8.645 -9.624 25.385 8.730 -1.820 -1.337 H8 29S 43 29S H9 H9 H 0 1 N N N -7.111 -8.870 27.257 6.014 -2.066 -0.019 H9 29S 44 29S H10 H10 H 0 1 N N N -8.281 -7.617 26.719 7.625 -2.230 0.709 H10 29S 45 29S H11 H11 H 0 1 N N N -7.914 -7.901 29.285 7.167 -0.129 1.454 H11 29S 46 29S H12 H12 H 0 1 N N N -9.607 -7.829 28.688 7.770 0.327 -0.161 H12 29S 47 29S H14 H14 H 0 1 N N N -9.221 -8.284 30.919 5.666 1.186 1.950 H14 29S 48 29S H15 H15 H 0 1 N N N -10.345 -9.684 30.992 5.712 2.342 0.597 H15 29S 49 29S H16 H16 H 0 1 N N N -8.338 -9.550 32.688 3.481 2.366 1.622 H16 29S 50 29S H17 H17 H 0 1 N N N -8.700 -11.114 31.882 3.378 1.668 -0.012 H17 29S 51 29S H18 H18 H 0 1 N N N -7.464 -8.914 33.463 1.859 -1.713 2.496 H18 29S 52 29S H19 H19 H 0 1 N N N -5.709 -7.793 34.778 -0.591 -1.821 2.697 H19 29S 53 29S H20 H20 H 0 1 N N N -4.541 -9.830 30.427 1.545 2.218 0.849 H20 29S 54 29S H21 H21 H 0 1 N N N -2.808 -8.623 31.727 -0.905 2.102 1.053 H21 29S 55 29S H22 H22 H 0 1 N N N -3.675 -6.545 34.572 -2.664 -0.573 2.849 H22 29S 56 29S H23 H23 H 0 1 N N N -2.960 -8.133 35.014 -2.795 1.066 2.167 H23 29S 57 29S H24 H24 H 0 1 N N N -3.558 -4.876 32.809 -2.556 -2.901 2.292 H24 29S 58 29S H25 H25 H 0 1 N N N -2.714 -3.100 31.299 -3.144 -5.103 1.387 H25 29S 59 29S H26 H26 H 0 1 N N N -0.914 -2.439 30.074 -3.454 -5.996 -1.454 H26 29S 60 29S H27 H27 H 0 1 N N N 0.947 -5.308 30.895 -4.491 -3.305 -2.247 H27 29S 61 29S H28 H28 H 0 1 N N N 2.111 -7.293 32.848 -5.431 -0.006 -2.564 H28 29S 62 29S H29 H29 H 0 1 N N N 1.439 -8.791 32.120 -3.854 0.715 -2.966 H29 29S 63 29S H30 H30 H 0 1 N N N 1.606 -7.305 31.124 -4.174 -0.994 -3.347 H30 29S 64 29S H31 H31 H 0 1 N N N 0.321 -8.317 35.660 -2.446 1.671 -2.421 H31 29S 65 29S H32 H32 H 0 1 N N N 0.349 -10.521 36.793 -2.303 4.118 -2.606 H32 29S 66 29S H33 H33 H 0 1 N N N -0.371 -12.661 36.665 -3.816 6.235 -1.125 H33 29S 67 29S H34 H34 H 0 1 N N N -1.990 -12.193 33.628 -3.924 4.523 1.329 H34 29S 68 29S H35 H35 H 0 1 N N N -1.975 -10.024 32.486 -4.081 2.077 1.523 H35 29S 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 29S CAB CAC SING N N 1 29S CAB CAA SING N N 2 29S CAC CAD SING N N 3 29S CAA CAG SING N N 4 29S CAD CAE SING N N 5 29S CAG NAF SING N N 6 29S CAE NAF SING N N 7 29S NAF CAH SING N N 8 29S OBI CBF SING N N 9 29S CAH CAI SING N N 10 29S CBF CBG DOUB Y N 11 29S CBF CBE SING Y N 12 29S OAJ CAI SING N N 13 29S OAJ CAK SING N N 14 29S CBG CAT SING Y N 15 29S CAP CAK DOUB Y N 16 29S CAP CAO SING Y N 17 29S CBE CBD DOUB Y N 18 29S CAK CAL SING Y N 19 29S CAT CAU SING Y N 20 29S CAT CAS DOUB Y N 21 29S CAO CAN DOUB Y N 22 29S CBH CAU SING N N 23 29S CBD CAS SING Y N 24 29S CAU CAV DOUB Y N 25 29S CAS NAR SING Y N 26 29S CAL CAM DOUB Y N 27 29S CAV NAR SING Y N 28 29S CAV CAW SING N N 29 29S CAN CAM SING Y N 30 29S CAN CAQ SING N N 31 29S NAR CAQ SING N N 32 29S CBB CAW DOUB Y N 33 29S CBB CBA SING Y N 34 29S CAW CAX SING Y N 35 29S CBA CAZ DOUB Y N 36 29S CAX CAY DOUB Y N 37 29S CAZ OBC SING N N 38 29S CAZ CAY SING Y N 39 29S CAE H1 SING N N 40 29S CAE H2 SING N N 41 29S CAD H3 SING N N 42 29S CAD H4 SING N N 43 29S CAC H5 SING N N 44 29S CAC H6 SING N N 45 29S CAB H7 SING N N 46 29S CAB H8 SING N N 47 29S CAA H9 SING N N 48 29S CAA H10 SING N N 49 29S CAG H11 SING N N 50 29S CAG H12 SING N N 51 29S CAH H14 SING N N 52 29S CAH H15 SING N N 53 29S CAI H16 SING N N 54 29S CAI H17 SING N N 55 29S CAL H18 SING N N 56 29S CAM H19 SING N N 57 29S CAP H20 SING N N 58 29S CAO H21 SING N N 59 29S CAQ H22 SING N N 60 29S CAQ H23 SING N N 61 29S CBD H24 SING N N 62 29S CBE H25 SING N N 63 29S OBI H26 SING N N 64 29S CBG H27 SING N N 65 29S CBH H28 SING N N 66 29S CBH H29 SING N N 67 29S CBH H30 SING N N 68 29S CAX H31 SING N N 69 29S CAY H32 SING N N 70 29S OBC H33 SING N N 71 29S CBA H34 SING N N 72 29S CBB H35 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 29S SMILES ACDLabs 12.01 "Oc1ccc(cc1)c3c(c2cc(O)ccc2n3Cc5ccc(OCCN4CCCCCC4)cc5)C" 29S InChI InChI 1.03 "InChI=1S/C30H34N2O3/c1-22-28-20-26(34)12-15-29(28)32(30(22)24-8-10-25(33)11-9-24)21-23-6-13-27(14-7-23)35-19-18-31-16-4-2-3-5-17-31/h6-15,20,33-34H,2-5,16-19,21H2,1H3" 29S InChIKey InChI 1.03 UCJGJABZCDBEDK-UHFFFAOYSA-N 29S SMILES_CANONICAL CACTVS 3.385 "Cc1c2cc(O)ccc2n(Cc3ccc(OCCN4CCCCCC4)cc3)c1c5ccc(O)cc5" 29S SMILES CACTVS 3.385 "Cc1c2cc(O)ccc2n(Cc3ccc(OCCN4CCCCCC4)cc3)c1c5ccc(O)cc5" 29S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c2cc(ccc2n(c1c3ccc(cc3)O)Cc4ccc(cc4)OCCN5CCCCCC5)O" 29S SMILES "OpenEye OEToolkits" 1.7.6 "Cc1c2cc(ccc2n(c1c3ccc(cc3)O)Cc4ccc(cc4)OCCN5CCCCCC5)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 29S "SYSTEMATIC NAME" ACDLabs 12.01 "1-{4-[2-(azepan-1-yl)ethoxy]benzyl}-2-(4-hydroxyphenyl)-3-methyl-1H-indol-5-ol" 29S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[[4-[2-(azepan-1-yl)ethoxy]phenyl]methyl]-2-(4-hydroxyphenyl)-3-methyl-indol-5-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 29S "Create component" 2013-09-13 RCSB 29S "Initial release" 2016-01-13 RCSB 29S "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 29S _pdbx_chem_comp_synonyms.name "1-{4-[2-(azepan-1-yl)ethoxy]benzyl}-2-(4-hydroxyphenyl)-3-methyl-1H-indol-5-ol" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##