data_2AT # _chem_comp.id 2AT _chem_comp.name ;2'-O-ALLYL THYMIDINE-5'-MONOPHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C13 H19 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-12-17 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.272 _chem_comp.one_letter_code T _chem_comp.three_letter_code 2AT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1Y9F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2AT P P P 0 1 N N N 10.735 4.070 5.432 2.787 0.324 -4.407 P 2AT 1 2AT OP1 O1P O 0 1 N N N 11.921 4.570 4.664 3.659 1.172 -5.286 OP1 2AT 2 2AT OP2 O2P O 0 1 N N N 10.942 3.310 6.696 1.198 0.588 -4.548 OP2 2AT 3 2AT "O5'" O5* O 0 1 N N N 9.759 5.278 5.659 3.063 0.476 -2.819 "O5'" 2AT 4 2AT "C5'" C5* C 0 1 N N N 9.471 6.141 4.583 2.282 -0.292 -1.921 "C5'" 2AT 5 2AT "C4'" C4* C 0 1 N N R 8.429 7.133 4.989 2.725 0.023 -0.498 "C4'" 2AT 6 2AT "O4'" O4* O 0 1 N N N 7.159 6.453 5.155 2.470 1.422 -0.246 "O4'" 2AT 7 2AT "C1'" C1* C 0 1 N N R 6.433 7.071 6.218 1.373 1.543 0.675 "C1'" 2AT 8 2AT N1 N1 N 0 1 N N N 6.244 6.088 7.316 0.452 2.524 0.177 N1 2AT 9 2AT C6 C6 C 0 1 N N N 7.103 5.027 7.521 0.309 2.663 -1.199 C6 2AT 10 2AT C2 C2 C 0 1 N N N 5.163 6.307 8.138 -0.300 3.336 1.055 C2 2AT 11 2AT O2 O2 O 0 1 N N N 4.429 7.283 8.017 -0.225 3.269 2.283 O2 2AT 12 2AT N3 N3 N 0 1 N N N 4.992 5.380 9.127 -1.159 4.248 0.431 N3 2AT 13 2AT C4 C4 C 0 1 N N N 5.820 4.310 9.418 -1.338 4.427 -0.932 C4 2AT 14 2AT O4 O4 O 0 1 N N N 5.583 3.609 10.371 -2.112 5.251 -1.413 O4 2AT 15 2AT C5 C5 C 0 1 N N N 6.950 4.139 8.531 -0.514 3.537 -1.792 C5 2AT 16 2AT C5M C5M C 0 1 N N N 7.889 3.007 8.782 -0.651 3.669 -3.275 C5M 2AT 17 2AT "C2'" C2* C 0 1 N N R 7.261 8.272 6.685 0.748 0.163 0.786 "C2'" 2AT 18 2AT "O2'" O2* O 0 1 N N N 6.917 9.374 5.841 0.137 -0.058 2.041 "O2'" 2AT 19 2AT "CB'" "CB'" C 0 1 N N N 5.656 9.977 6.128 -0.332 -1.396 2.174 "CB'" 2AT 20 2AT "CC'" "CC'" C 0 1 N N N 5.350 11.088 5.165 -0.961 -1.552 3.518 "CC'" 2AT 21 2AT "CD'" "CD'" C 0 1 N N N 4.410 10.978 4.214 -2.238 -1.903 3.709 "CD'" 2AT 22 2AT "C3'" C3* C 0 1 N N R 8.660 7.804 6.337 1.940 -0.742 0.560 "C3'" 2AT 23 2AT "O3'" O3* O 0 1 N N N 9.595 8.866 6.277 2.742 -0.809 1.739 "O3'" 2AT 24 2AT OP3 O3P O 0 1 N Y N ? ? ? 2.921 -1.270 -4.647 OP3 2AT 25 2AT HOP2 2HOP H 0 0 N N N 10.190 2.993 7.183 0.799 0.616 -5.443 HOP2 2AT 26 2AT "H5'" 1H5* H 0 1 N N N 9.179 5.581 3.664 1.229 -0.035 -2.051 "H5'" 2AT 27 2AT "H5''" 2H5* H 0 0 N N N 10.388 6.636 4.187 2.428 -1.352 -2.133 "H5''" 2AT 28 2AT "H4'" H4* H 0 1 N N N 8.459 7.901 4.181 3.804 -0.139 -0.410 "H4'" 2AT 29 2AT "H1'" H1* H 0 1 N N N 5.423 7.411 5.890 1.754 1.910 1.633 "H1'" 2AT 30 2AT H6 H6 H 0 1 N N N 7.959 4.881 6.840 0.928 1.995 -1.790 H6 2AT 31 2AT HN3 HN3 H 0 1 N N N 4.162 5.499 9.707 -1.709 4.843 1.045 HN3 2AT 32 2AT H71 1H5M H 0 1 N N N 8.912 3.441 8.876 -1.057 2.748 -3.690 H71 2AT 33 2AT H72 2H5M H 0 1 N N N 7.763 2.276 9.614 0.324 3.866 -3.719 H72 2AT 34 2AT H73 3H5M H 0 1 N N N 7.961 2.422 7.836 -1.320 4.497 -3.510 H73 2AT 35 2AT "H2'" H2* H 0 1 N N N 7.127 8.577 7.749 -0.000 0.004 -0.000 "H2'" 2AT 36 2AT "HB'1" "1HB'" H 0 0 N N N 5.601 10.326 7.186 -1.036 -1.601 1.361 "HB'1" 2AT 37 2AT "HB'2" "2HB'" H 0 0 N N N 4.837 9.221 6.153 0.521 -2.075 2.082 "HB'2" 2AT 38 2AT "HC'" "HC'" H 0 1 N N N 5.858 12.067 5.155 -0.333 -1.377 4.388 "HC'" 2AT 39 2AT "HD'1" "1HD'" H 0 0 N N N 4.185 11.794 3.507 -2.655 -2.005 4.704 "HD'1" 2AT 40 2AT "HD'2" "2HD'" H 0 0 N N N 3.902 9.999 4.224 -2.888 -2.094 2.862 "HD'2" 2AT 41 2AT "H3'" H3* H 0 1 N N N 9.113 7.128 7.100 1.675 -1.764 0.277 "H3'" 2AT 42 2AT "HO3'" H3T H 0 0 N Y N 9.739 9.284 7.118 2.341 -1.485 2.305 "HO3'" 2AT 43 2AT HOP3 3HOP H 0 0 N N N -0.752 -0.317 0.487 2.886 -1.617 -5.563 HOP3 2AT 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2AT P OP1 DOUB N N 1 2AT P OP2 SING N N 2 2AT P "O5'" SING N N 3 2AT P OP3 SING N N 4 2AT OP2 HOP2 SING N N 5 2AT "O5'" "C5'" SING N N 6 2AT "C5'" "C4'" SING N N 7 2AT "C5'" "H5'" SING N N 8 2AT "C5'" "H5''" SING N N 9 2AT "C4'" "O4'" SING N N 10 2AT "C4'" "C3'" SING N N 11 2AT "C4'" "H4'" SING N N 12 2AT "O4'" "C1'" SING N N 13 2AT "C1'" N1 SING N N 14 2AT "C1'" "C2'" SING N N 15 2AT "C1'" "H1'" SING N N 16 2AT N1 C6 SING N N 17 2AT N1 C2 SING N N 18 2AT C6 C5 DOUB N N 19 2AT C6 H6 SING N N 20 2AT C2 O2 DOUB N N 21 2AT C2 N3 SING N N 22 2AT N3 C4 SING N N 23 2AT N3 HN3 SING N N 24 2AT C4 O4 DOUB N N 25 2AT C4 C5 SING N N 26 2AT C5 C5M SING N N 27 2AT C5M H71 SING N N 28 2AT C5M H72 SING N N 29 2AT C5M H73 SING N N 30 2AT "C2'" "O2'" SING N N 31 2AT "C2'" "C3'" SING N N 32 2AT "C2'" "H2'" SING N N 33 2AT "O2'" "CB'" SING N N 34 2AT "CB'" "CC'" SING N N 35 2AT "CB'" "HB'1" SING N N 36 2AT "CB'" "HB'2" SING N N 37 2AT "CC'" "CD'" DOUB N N 38 2AT "CC'" "HC'" SING N N 39 2AT "CD'" "HD'1" SING N N 40 2AT "CD'" "HD'2" SING N N 41 2AT "C3'" "O3'" SING N N 42 2AT "C3'" "H3'" SING N N 43 2AT "O3'" "HO3'" SING N N 44 2AT OP3 HOP3 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2AT SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2OC\C=C)COP(=O)(O)O" 2AT SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OCC=C)C(=O)NC1=O" 2AT SMILES CACTVS 3.341 "CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OCC=C)C(=O)NC1=O" 2AT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCC=C" 2AT SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)OCC=C" 2AT InChI InChI 1.03 "InChI=1S/C13H19N2O9P/c1-3-4-22-10-9(16)8(6-23-25(19,20)21)24-12(10)15-5-7(2)11(17)14-13(15)18/h3,5,8-10,12,16H,1,4,6H2,2H3,(H,14,17,18)(H2,19,20,21)/t8-,9-,10-,12-/m1/s1" 2AT InChIKey InChI 1.03 CNJYRVZFMQQJFA-DNRKLUKYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2AT "SYSTEMATIC NAME" ACDLabs 10.04 ;5-methyl-2'-O-prop-2-en-1-yluridine 5'-(dihydrogen phosphate) ; 2AT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-4-prop-2-enoxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2AT "Create component" 2004-12-17 RCSB 2AT "Modify linking type" 2011-06-04 RCSB 2AT "Modify descriptor" 2011-06-04 RCSB #