data_2EK # _chem_comp.id 2EK _chem_comp.name "1-(3-{[(2,5-dichlorothiophen-3-yl)methyl]amino}propyl)-3-thiophen-3-ylurea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 Cl2 N3 O S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-09-27 _chem_comp.pdbx_modified_date 2014-04-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.314 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2EK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4MWB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2EK O O O 0 1 N N N 45.509 13.847 -13.093 -4.506 0.083 1.199 O 2EK 1 2EK C8 C8 C 0 1 N N N 44.298 13.877 -12.910 -4.220 0.195 0.023 C8 2EK 2 2EK N2 N2 N 0 1 N N N 43.477 14.756 -13.605 -5.195 0.315 -0.900 N2 2EK 3 2EK C9 C9 C 0 1 Y N N 43.892 15.784 -14.501 -6.545 0.195 -0.517 C9 2EK 4 2EK C12 C12 C 0 1 Y N N 42.999 16.700 -15.142 -6.944 -0.518 0.605 C12 2EK 5 2EK C11 C11 C 0 1 Y N N 43.642 17.619 -15.922 -8.260 -0.530 0.824 C11 2EK 6 2EK S1 S1 S 0 1 Y N N 45.325 17.397 -15.881 -9.078 0.396 -0.428 S1 2EK 7 2EK C10 C10 C 0 1 Y N N 45.215 16.063 -14.836 -7.542 0.766 -1.203 C10 2EK 8 2EK N1 N1 N 0 1 N N N 43.680 13.025 -12.077 -2.927 0.206 -0.358 N1 2EK 9 2EK C7 C7 C 0 1 N N N 44.434 12.139 -11.198 -1.867 0.083 0.645 C7 2EK 10 2EK C6 C6 C 0 1 N N N 43.555 11.475 -10.171 -0.503 0.123 -0.046 C6 2EK 11 2EK C5 C5 C 0 1 N N N 43.127 12.409 -9.068 0.604 -0.006 1.002 C5 2EK 12 2EK N N N 0 1 N N N 42.055 11.836 -8.258 1.914 0.033 0.338 N 2EK 13 2EK C4 C4 C 0 1 N N N 41.734 12.445 -6.997 3.004 -0.088 1.315 C4 2EK 14 2EK C2 C2 C 0 1 Y N N 40.832 13.631 -7.048 4.329 -0.044 0.598 C2 2EK 15 2EK C1 C1 C 0 1 Y N N 39.419 13.619 -7.082 5.152 1.070 0.621 C1 2EK 16 2EK C3 C3 C 0 1 Y N N 41.296 14.889 -7.077 4.801 -1.077 -0.102 C3 2EK 17 2EK CL1 CL1 CL 0 0 N N N 42.907 15.428 -7.034 3.996 -2.602 -0.302 CL1 2EK 18 2EK S S S 0 1 Y N N 40.086 16.104 -7.153 6.364 -0.658 -0.791 S 2EK 19 2EK C C C 0 1 Y N N 38.893 14.859 -7.132 6.289 0.942 -0.065 C 2EK 20 2EK CL CL CL 0 0 N N N 37.222 15.267 -7.140 7.508 2.168 -0.219 CL 2EK 21 2EK H1 H1 H 0 1 N N N 42.492 14.657 -13.462 -4.967 0.483 -1.827 H1 2EK 22 2EK H2 H2 H 0 1 N N N 41.926 16.668 -15.022 -6.243 -1.025 1.251 H2 2EK 23 2EK H3 H3 H 0 1 N N N 43.143 18.389 -16.492 -8.749 -1.034 1.644 H3 2EK 24 2EK H4 H4 H 0 1 N N N 46.064 15.501 -14.476 -7.423 1.358 -2.098 H4 2EK 25 2EK H5 H5 H 0 1 N N N 42.681 12.997 -12.059 -2.699 0.296 -1.296 H5 2EK 26 2EK H6 H6 H 0 1 N N N 44.916 11.361 -11.808 -1.940 0.907 1.354 H6 2EK 27 2EK H7 H7 H 0 1 N N N 45.204 12.727 -10.678 -1.977 -0.863 1.176 H7 2EK 28 2EK H8 H8 H 0 1 N N N 42.655 11.092 -10.675 -0.430 -0.701 -0.755 H8 2EK 29 2EK H9 H9 H 0 1 N N N 44.110 10.637 -9.725 -0.393 1.069 -0.577 H9 2EK 30 2EK H10 H10 H 0 1 N N N 43.992 12.615 -8.420 0.532 0.819 1.711 H10 2EK 31 2EK H11 H11 H 0 1 N N N 42.772 13.349 -9.515 0.494 -0.952 1.532 H11 2EK 32 2EK H12 H12 H 0 1 N N N 41.224 11.858 -8.814 1.982 -0.682 -0.371 H12 2EK 33 2EK H14 H14 H 0 1 N N N 41.250 11.682 -6.370 2.948 0.736 2.026 H14 2EK 34 2EK H15 H15 H 0 1 N N N 42.677 12.761 -6.527 2.910 -1.035 1.847 H15 2EK 35 2EK H16 H16 H 0 1 N N N 38.826 12.716 -7.069 4.893 1.973 1.153 H16 2EK 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2EK C11 S1 SING Y N 1 2EK C11 C12 DOUB Y N 2 2EK S1 C10 SING Y N 3 2EK C12 C9 SING Y N 4 2EK C10 C9 DOUB Y N 5 2EK C9 N2 SING N N 6 2EK N2 C8 SING N N 7 2EK O C8 DOUB N N 8 2EK C8 N1 SING N N 9 2EK N1 C7 SING N N 10 2EK C7 C6 SING N N 11 2EK C6 C5 SING N N 12 2EK C5 N SING N N 13 2EK N C4 SING N N 14 2EK S C SING Y N 15 2EK S C3 SING Y N 16 2EK CL C SING N N 17 2EK C C1 DOUB Y N 18 2EK C1 C2 SING Y N 19 2EK C3 C2 DOUB Y N 20 2EK C3 CL1 SING N N 21 2EK C2 C4 SING N N 22 2EK N2 H1 SING N N 23 2EK C12 H2 SING N N 24 2EK C11 H3 SING N N 25 2EK C10 H4 SING N N 26 2EK N1 H5 SING N N 27 2EK C7 H6 SING N N 28 2EK C7 H7 SING N N 29 2EK C6 H8 SING N N 30 2EK C6 H9 SING N N 31 2EK C5 H10 SING N N 32 2EK C5 H11 SING N N 33 2EK N H12 SING N N 34 2EK C4 H14 SING N N 35 2EK C4 H15 SING N N 36 2EK C1 H16 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2EK SMILES ACDLabs 12.01 "Clc1sc(Cl)cc1CNCCCNC(=O)Nc2ccsc2" 2EK InChI InChI 1.03 "InChI=1S/C13H15Cl2N3OS2/c14-11-6-9(12(15)21-11)7-16-3-1-4-17-13(19)18-10-2-5-20-8-10/h2,5-6,8,16H,1,3-4,7H2,(H2,17,18,19)" 2EK InChIKey InChI 1.03 SZYXSDCUJDMWNQ-UHFFFAOYSA-N 2EK SMILES_CANONICAL CACTVS 3.385 "Clc1sc(Cl)c(CNCCCNC(=O)Nc2cscc2)c1" 2EK SMILES CACTVS 3.385 "Clc1sc(Cl)c(CNCCCNC(=O)Nc2cscc2)c1" 2EK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cscc1NC(=O)NCCCNCc2cc(sc2Cl)Cl" 2EK SMILES "OpenEye OEToolkits" 1.7.6 "c1cscc1NC(=O)NCCCNCc2cc(sc2Cl)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2EK "SYSTEMATIC NAME" ACDLabs 12.01 "1-(3-{[(2,5-dichlorothiophen-3-yl)methyl]amino}propyl)-3-thiophen-3-ylurea" 2EK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[3-[[2,5-bis(chloranyl)thiophen-3-yl]methylamino]propyl]-3-thiophen-3-yl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2EK "Create component" 2013-09-27 RCSB 2EK "Initial release" 2014-04-30 RCSB #