data_2M5 # _chem_comp.id 2M5 _chem_comp.name "methyl 7-deoxy-L-glycero-alpha-D-manno-heptopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H16 O6" _chem_comp.mon_nstd_parent_comp_id MAN _chem_comp.pdbx_synonyms ;methyl 7-deoxy-L-glycero-alpha-D-manno-heptoside; methyl 7-deoxy-L-glycero-D-manno-heptoside; methyl 7-deoxy-L-glycero-manno-heptoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-08-16 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 208.209 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2M5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3OAZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 2M5 "methyl 7-deoxy-L-glycero-alpha-D-manno-heptoside" PDB ? 2 2M5 "methyl 7-deoxy-L-glycero-D-manno-heptoside" PDB ? 3 2M5 "methyl 7-deoxy-L-glycero-manno-heptoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2M5 C1 C1 C 0 1 N N S 48.849 -24.955 39.586 0.705 -1.446 -0.509 C1 2M5 1 2M5 O1 O1 O 0 1 N N N 49.228 -26.204 40.230 0.763 -2.125 0.746 O1 2M5 2 2M5 C2 C2 C 0 1 N N S 49.996 -24.413 38.744 1.801 -0.379 -0.563 C2 2M5 3 2M5 O2 O2 O 0 1 N N N 49.482 -23.265 38.038 1.778 0.266 -1.839 O2 2M5 4 2M5 C3 C3 C 0 1 N N S 51.181 -23.980 39.618 1.549 0.657 0.537 C3 2M5 5 2M5 O3 O3 O 0 1 N N N 52.149 -23.330 38.776 2.526 1.696 0.448 O3 2M5 6 2M5 C4 C4 C 0 1 N N S 50.720 -23.008 40.724 0.150 1.251 0.354 C4 2M5 7 2M5 O4 O4 O 0 1 N N N 51.822 -22.674 41.606 -0.124 2.165 1.417 O4 2M5 8 2M5 C5 C5 C 0 1 N N R 49.539 -23.603 41.537 -0.883 0.121 0.372 C5 2M5 9 2M5 O5 O5 O 0 1 N N N 48.423 -24.038 40.624 -0.573 -0.823 -0.655 O5 2M5 10 2M5 C6 C6 C 0 1 N N S 48.954 -22.649 42.604 -2.278 0.700 0.130 C6 2M5 11 2M5 O6 O6 O 0 1 N N N 48.312 -21.563 41.934 -2.277 1.451 -1.086 O6 2M5 12 2M5 CAI CAI C 0 1 N N N 47.986 -23.367 43.558 -3.292 -0.441 0.024 CAI 2M5 13 2M5 CAN CAN C 0 1 N N N 48.014 -26.784 40.679 -0.065 -3.288 0.817 CAN 2M5 14 2M5 H1 H1 H 0 1 N N N 48.015 -25.106 38.884 0.855 -2.162 -1.317 H1 2M5 15 2M5 H2 H2 H 0 1 N N N 50.361 -25.193 38.060 2.773 -0.847 -0.409 H2 2M5 16 2M5 HO2 HO2 H 0 1 N Y N 50.168 -22.892 37.497 1.926 -0.333 -2.584 HO2 2M5 17 2M5 H3 H3 H 0 1 N N N 51.621 -24.864 40.102 1.618 0.175 1.513 H3 2M5 18 2M5 HO3 HO3 H 0 1 N Y N 52.891 -23.054 39.301 3.437 1.390 0.549 HO3 2M5 19 2M5 H4 H4 H 0 1 N N N 50.370 -22.087 40.236 0.099 1.776 -0.600 H4 2M5 20 2M5 HO4 HO4 H 0 1 N Y N 51.519 -22.076 42.279 0.495 2.906 1.469 HO4 2M5 21 2M5 H5 H5 H 0 1 N N N 49.972 -24.463 42.069 -0.859 -0.377 1.342 H5 2M5 22 2M5 H61 H6 H 0 1 N N N 49.773 -22.271 43.233 -2.550 1.352 0.959 H61 2M5 23 2M5 HO6 HO6 H 0 1 N Y N 47.946 -20.966 42.576 -2.043 0.932 -1.868 HO6 2M5 24 2M5 HAI HAI H 0 1 N N N 47.598 -22.649 44.296 -3.293 -1.013 0.951 HAI 2M5 25 2M5 HAIA HAIA H 0 0 N N N 47.149 -23.789 42.982 -4.286 -0.028 -0.149 HAIA 2M5 26 2M5 HAIB HAIB H 0 0 N N N 48.518 -24.177 44.079 -3.020 -1.093 -0.806 HAIB 2M5 27 2M5 HAN HAN H 0 1 N N N 48.227 -27.740 41.180 -1.105 -3.004 0.652 HAN 2M5 28 2M5 HANA HANA H 0 0 N N N 47.521 -26.101 41.387 0.243 -4.000 0.051 HANA 2M5 29 2M5 HANB HANB H 0 0 N N N 47.352 -26.961 39.818 0.035 -3.746 1.801 HANB 2M5 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2M5 C1 O1 SING N N 1 2M5 C1 C2 SING N N 2 2M5 C1 O5 SING N N 3 2M5 O1 CAN SING N N 4 2M5 C2 O2 SING N N 5 2M5 C2 C3 SING N N 6 2M5 C3 O3 SING N N 7 2M5 C3 C4 SING N N 8 2M5 C4 O4 SING N N 9 2M5 C4 C5 SING N N 10 2M5 C5 O5 SING N N 11 2M5 C5 C6 SING N N 12 2M5 C6 O6 SING N N 13 2M5 C6 CAI SING N N 14 2M5 C1 H1 SING N N 15 2M5 C2 H2 SING N N 16 2M5 O2 HO2 SING N N 17 2M5 C3 H3 SING N N 18 2M5 O3 HO3 SING N N 19 2M5 C4 H4 SING N N 20 2M5 O4 HO4 SING N N 21 2M5 C5 H5 SING N N 22 2M5 C6 H61 SING N N 23 2M5 O6 HO6 SING N N 24 2M5 CAI HAI SING N N 25 2M5 CAI HAIA SING N N 26 2M5 CAI HAIB SING N N 27 2M5 CAN HAN SING N N 28 2M5 CAN HANA SING N N 29 2M5 CAN HANB SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2M5 SMILES ACDLabs 12.01 "OC1C(O)C(O)C(OC1OC)C(O)C" 2M5 SMILES_CANONICAL CACTVS 3.370 "CO[C@H]1O[C@H]([C@H](C)O)[C@@H](O)[C@H](O)[C@@H]1O" 2M5 SMILES CACTVS 3.370 "CO[CH]1O[CH]([CH](C)O)[CH](O)[CH](O)[CH]1O" 2M5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@@H]([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)OC)O)O)O)O" 2M5 SMILES "OpenEye OEToolkits" 1.7.0 "CC(C1C(C(C(C(O1)OC)O)O)O)O" 2M5 InChI InChI 1.03 "InChI=1S/C8H16O6/c1-3(9)7-5(11)4(10)6(12)8(13-2)14-7/h3-12H,1-2H3/t3-,4-,5-,6-,7+,8-/m0/s1" 2M5 InChIKey InChI 1.03 PNWOVLBMFHSUMR-IHKZFYOVSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2M5 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 7-deoxy-L-glycero-alpha-D-manno-heptopyranoside" 2M5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,3S,4S,5S,6S)-2-[(1S)-1-hydroxyethyl]-6-methoxy-oxane-3,4,5-triol" # _pdbx_chem_comp_related.comp_id 2M5 _pdbx_chem_comp_related.related_comp_id MAN _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 2M5 C1 MAN C1 "Carbohydrate core" 2 2M5 C2 MAN C2 "Carbohydrate core" 3 2M5 C3 MAN C3 "Carbohydrate core" 4 2M5 C4 MAN C4 "Carbohydrate core" 5 2M5 C5 MAN C5 "Carbohydrate core" 6 2M5 C6 MAN C6 "Carbohydrate core" 7 2M5 O1 MAN O1 "Carbohydrate core" 8 2M5 O2 MAN O2 "Carbohydrate core" 9 2M5 O3 MAN O3 "Carbohydrate core" 10 2M5 O4 MAN O4 "Carbohydrate core" 11 2M5 O5 MAN O5 "Carbohydrate core" 12 2M5 O6 MAN O6 "Carbohydrate core" 13 2M5 H1 MAN H1 "Carbohydrate core" 14 2M5 H2 MAN H2 "Carbohydrate core" 15 2M5 H3 MAN H3 "Carbohydrate core" 16 2M5 H4 MAN H4 "Carbohydrate core" 17 2M5 H5 MAN H5 "Carbohydrate core" 18 2M5 H61 MAN H61 "Carbohydrate core" 19 2M5 HO2 MAN HO2 "Carbohydrate core" 20 2M5 HO3 MAN HO3 "Carbohydrate core" 21 2M5 HO4 MAN HO4 "Carbohydrate core" 22 2M5 HO6 MAN HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 2M5 "CARBOHYDRATE ISOMER" D PDB ? 2M5 "CARBOHYDRATE RING" pyranose PDB ? 2M5 "CARBOHYDRATE ANOMER" alpha PDB ? 2M5 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2M5 "Create component" 2010-08-16 RCSB 2M5 "Modify descriptor" 2011-06-04 RCSB 2M5 "Other modification" 2020-07-03 RCSB 2M5 "Modify parent residue" 2020-07-17 RCSB 2M5 "Modify synonyms" 2020-07-17 RCSB 2M5 "Modify atom id" 2020-07-17 RCSB 2M5 "Modify component atom id" 2020-07-17 RCSB 2M5 "Modify leaving atom flag" 2020-07-17 RCSB ##