data_2MA # _chem_comp.id 2MA _chem_comp.name "2-METHYLADENOSINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.248 _chem_comp.one_letter_code A _chem_comp.three_letter_code 2MA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EFW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2MA P P P 0 1 N N N 4.974 225.738 8.709 -0.910 -0.259 4.989 P 2MA 1 2MA OP1 O1P O 0 1 N N N 3.852 226.621 8.281 -1.579 1.050 4.824 OP1 2MA 2 2MA OP2 O2P O 0 1 N N N 4.905 224.285 8.410 -1.958 -1.326 5.584 OP2 2MA 3 2MA OP3 O3P O 0 1 N Y N 5.179 225.912 10.290 0.330 -0.103 6.002 OP3 2MA 4 2MA "O5'" O5* O 0 1 N N N 6.367 226.264 8.155 -0.375 -0.772 3.560 "O5'" 2MA 5 2MA "C5'" C5* C 0 1 N N N 7.569 225.606 8.567 0.545 0.211 3.086 "C5'" 2MA 6 2MA "C4'" C4* C 0 1 N N R 8.470 226.555 9.317 1.094 -0.217 1.723 "C4'" 2MA 7 2MA "O4'" O4* O 0 1 N N N 9.104 227.444 8.373 0.023 -0.321 0.760 "O4'" 2MA 8 2MA "C3'" C3* C 0 1 N N S 7.823 227.422 10.391 2.034 0.867 1.153 "C3'" 2MA 9 2MA "O3'" O3* O 0 1 N N N 8.785 227.628 11.418 3.399 0.531 1.408 "O3'" 2MA 10 2MA "C2'" C2* C 0 1 N N R 7.618 228.748 9.670 1.745 0.854 -0.366 "C2'" 2MA 11 2MA "O2'" O2* O 0 1 N N N 7.699 229.832 10.571 2.925 0.512 -1.096 "O2'" 2MA 12 2MA "C1'" C1* C 0 1 N N R 8.813 228.776 8.711 0.663 -0.235 -0.531 "C1'" 2MA 13 2MA N9 N9 N 0 1 Y N N 8.600 229.481 7.452 -0.306 0.160 -1.555 N9 2MA 14 2MA C8 C8 C 0 1 Y N N 7.447 229.628 6.720 -1.440 0.895 -1.354 C8 2MA 15 2MA N7 N7 N 0 1 Y N N 7.623 230.256 5.583 -2.072 1.052 -2.489 N7 2MA 16 2MA C5 C5 C 0 1 Y N N 8.977 230.560 5.574 -1.390 0.436 -3.456 C5 2MA 17 2MA C6 C6 C 0 1 N N N 9.799 231.212 4.642 -1.612 0.265 -4.903 C6 2MA 18 2MA N6 N6 N 0 1 N N N 9.350 231.704 3.480 -2.775 0.442 -5.486 N6 2MA 19 2MA N1 N1 N 0 1 N N N 11.113 231.346 4.941 -0.448 -0.100 -5.588 N1 2MA 20 2MA C2 C2 C 0 1 N N N 11.558 230.853 6.101 0.498 -0.827 -4.931 C2 2MA 21 2MA CM2 CM2 C 0 1 N N N 12.976 230.960 6.277 1.442 -1.673 -5.745 CM2 2MA 22 2MA N3 N3 N 0 1 N N N 10.889 230.221 7.055 0.634 -0.825 -3.628 N3 2MA 23 2MA C4 C4 C 0 1 Y N N 9.587 230.103 6.727 -0.243 -0.137 -2.876 C4 2MA 24 2MA HOP2 2HOP H 0 0 N N N 5.620 223.722 8.682 -2.253 -0.981 6.438 HOP2 2MA 25 2MA HOP3 3HOP H 0 0 N N N 5.894 225.349 10.562 0.738 -0.976 6.082 HOP3 2MA 26 2MA "H5'" 1H5* H 0 1 N N N 7.353 224.686 9.160 1.368 0.310 3.794 "H5'" 2MA 27 2MA "H5''" 2H5* H 0 0 N N N 8.095 225.131 7.706 0.034 1.169 2.986 "H5''" 2MA 28 2MA "H4'" H4* H 0 1 N N N 9.175 225.882 9.858 1.620 -1.168 1.810 "H4'" 2MA 29 2MA "H3'" H3* H 0 1 N N N 6.892 226.991 10.829 1.795 1.842 1.580 "H3'" 2MA 30 2MA "HO3'" *HO3 H 0 0 N Y N 8.381 228.168 12.087 3.936 1.242 1.031 "HO3'" 2MA 31 2MA "H2'" H2* H 0 1 N N N 6.623 228.834 9.173 1.363 1.822 -0.690 "H2'" 2MA 32 2MA "HO2'" *HO2 H 0 0 N N N 7.571 230.659 10.121 3.581 1.196 -0.904 "HO2'" 2MA 33 2MA "H1'" H1* H 0 1 N N N 9.623 229.320 9.249 1.122 -1.189 -0.791 "H1'" 2MA 34 2MA H8 H8 H 0 1 N N N 6.450 229.267 7.023 -1.765 1.288 -0.402 H8 2MA 35 2MA HN6 HN6 H 0 1 N N N 9.503 232.187 4.364 -2.862 0.314 -6.444 HN6 2MA 36 2MA HN1 HN1 H 0 1 N N N 11.367 232.332 4.881 -0.321 0.154 -6.516 HN1 2MA 37 2MA HM21 1HM2 H 0 0 N N N 13.347 230.548 7.244 2.137 -2.186 -5.080 HM21 2MA 38 2MA HM22 2HM2 H 0 0 N N N 13.512 230.488 5.420 0.873 -2.410 -6.313 HM22 2MA 39 2MA HM23 3HM2 H 0 0 N N N 13.306 232.017 6.149 1.999 -1.037 -6.433 HM23 2MA 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2MA P OP1 DOUB N N 1 2MA P OP2 SING N N 2 2MA P OP3 SING N N 3 2MA P "O5'" SING N N 4 2MA OP2 HOP2 SING N N 5 2MA OP3 HOP3 SING N N 6 2MA "O5'" "C5'" SING N N 7 2MA "C5'" "C4'" SING N N 8 2MA "C5'" "H5'" SING N N 9 2MA "C5'" "H5''" SING N N 10 2MA "C4'" "O4'" SING N N 11 2MA "C4'" "C3'" SING N N 12 2MA "C4'" "H4'" SING N N 13 2MA "O4'" "C1'" SING N N 14 2MA "C3'" "O3'" SING N N 15 2MA "C3'" "C2'" SING N N 16 2MA "C3'" "H3'" SING N N 17 2MA "O3'" "HO3'" SING N N 18 2MA "C2'" "O2'" SING N N 19 2MA "C2'" "C1'" SING N N 20 2MA "C2'" "H2'" SING N N 21 2MA "O2'" "HO2'" SING N N 22 2MA "C1'" N9 SING N N 23 2MA "C1'" "H1'" SING N N 24 2MA N9 C8 SING Y N 25 2MA N9 C4 SING Y N 26 2MA C8 N7 DOUB Y N 27 2MA C8 H8 SING N N 28 2MA N7 C5 SING Y N 29 2MA C5 C6 SING N N 30 2MA C5 C4 DOUB Y N 31 2MA C6 N6 DOUB N N 32 2MA C6 N1 SING N N 33 2MA N6 HN6 SING N N 34 2MA N1 C2 SING N N 35 2MA N1 HN1 SING N N 36 2MA C2 CM2 SING N N 37 2MA C2 N3 DOUB N N 38 2MA CM2 HM21 SING N N 39 2MA CM2 HM22 SING N N 40 2MA CM2 HM23 SING N N 41 2MA N3 C4 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2MA SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1c2N=C(NC1=[N@H])C)C(O)C3O" 2MA SMILES_CANONICAL CACTVS 3.341 "CC1=Nc2n(cnc2C(=N)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" 2MA SMILES CACTVS 3.341 "CC1=Nc2n(cnc2C(=N)N1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" 2MA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=Nc2c(ncn2[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)C(=N)N1" 2MA SMILES "OpenEye OEToolkits" 1.5.0 "CC1=Nc2c(ncn2C3C(C(C(O3)COP(=O)(O)O)O)O)C(=N)N1" 2MA InChI InChI 1.03 "InChI=1S/C11H16N5O7P/c1-4-14-9(12)6-10(15-4)16(3-13-6)11-8(18)7(17)5(23-11)2-22-24(19,20)21/h3,5,7-8,11,17-18H,2H2,1H3,(H2,12,14,15)(H2,19,20,21)/t5-,7-,8-,11-/m1/s1" 2MA InChIKey InChI 1.03 DEYSCYWEHGTTSA-IOSLPCCCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2MA "SYSTEMATIC NAME" ACDLabs 10.04 ;2-methyladenosine 5'-(dihydrogen phosphate) ; 2MA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-imino-2-methyl-1H-purin-9-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2MA "Create component" 1999-07-08 RCSB 2MA "Modify descriptor" 2011-06-04 RCSB #