data_2NV # _chem_comp.id 2NV _chem_comp.name "3,6,9,12,15-pentaoxaoctadecan-17-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H29 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Jeffamine ED-2001" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-21 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 279.373 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2NV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LU3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2NV N1 N1 N 0 1 N N N -23.717 -29.985 -3.417 5.632 -1.581 -0.813 N1 2NV 1 2NV C2 C2 C 0 1 N N R -22.389 -30.312 -2.931 6.370 -0.664 0.066 C2 2NV 2 2NV C3 C3 C 0 1 N N N -21.472 -29.206 -3.448 5.417 -0.083 1.112 C3 2NV 3 2NV O4 O4 O 0 1 N N N -20.142 -29.609 -3.561 4.433 0.725 0.463 O4 2NV 4 2NV C5 C5 C 0 1 N N N -19.185 -28.560 -3.677 3.488 1.319 1.356 C5 2NV 5 2NV C6 C6 C 0 1 N N N -19.138 -27.715 -2.392 2.489 2.158 0.556 C6 2NV 6 2NV O7 O7 O 0 1 N N N -18.342 -26.595 -2.620 1.721 1.302 -0.293 O7 2NV 7 2NV C8 C8 C 0 1 N N N -18.269 -25.699 -1.544 0.752 1.989 -1.087 C8 2NV 8 2NV C9 C9 C 0 1 N N N -17.239 -26.241 -0.599 -0.006 0.980 -1.952 C9 2NV 9 2NV O10 O10 O 0 1 N N N -15.974 -26.065 -1.107 -0.760 0.104 -1.112 O10 2NV 10 2NV C11 C11 C 0 1 N N N -15.004 -25.943 -0.070 -1.509 -0.882 -1.824 C11 2NV 11 2NV C12 C12 C 0 1 N N N -14.790 -27.341 0.456 -2.272 -1.759 -0.829 C12 2NV 12 2NV O13 O13 O 0 1 N N N -14.050 -27.473 1.620 -3.245 -0.967 -0.144 O13 2NV 13 2NV C14 C14 C 0 1 N N N -14.075 -28.780 2.189 -4.017 -1.694 0.814 C14 2NV 14 2NV C15 C15 C 0 1 N N N -15.433 -28.969 2.859 -5.020 -0.752 1.482 C15 2NV 15 2NV O16 O16 O 0 1 N N N -15.605 -30.207 3.515 -5.960 -0.290 0.510 O16 2NV 16 2NV C17 C17 C 0 1 N N N -16.865 -30.377 4.127 -6.947 0.601 1.034 C17 2NV 17 2NV C18 C18 C 0 1 N N N -16.848 -29.826 5.560 -7.895 1.029 -0.089 C18 2NV 18 2NV C2A C2A C 0 1 N N N -22.490 -30.335 -1.397 7.495 -1.427 0.769 C2A 2NV 19 2NV HN1 HN1 H 0 1 N N N -24.366 -30.680 -3.107 6.225 -1.929 -1.552 HN1 2NV 20 2NV HN1A HN1A H 0 0 N N N -23.991 -29.091 -3.062 5.228 -2.341 -0.286 HN1A 2NV 21 2NV H2 H2 H 0 1 N N N -22.054 -31.291 -3.304 6.795 0.145 -0.527 H2 2NV 22 2NV H3 H3 H 0 1 N N N -21.828 -28.891 -4.440 4.924 -0.896 1.647 H3 2NV 23 2NV H3A H3A H 0 1 N N N -21.523 -28.355 -2.753 5.980 0.527 1.818 H3A 2NV 24 2NV H5 H5 H 0 1 N N N -18.192 -28.997 -3.857 2.956 0.536 1.895 H5 2NV 25 2NV H5A H5A H 0 1 N N N -19.460 -27.913 -4.523 4.012 1.958 2.067 H5A 2NV 26 2NV H6 H6 H 0 1 N N N -20.156 -27.396 -2.122 1.823 2.681 1.242 H6 2NV 27 2NV H6A H6A H 0 1 N N N -18.711 -28.312 -1.573 3.028 2.884 -0.052 H6A 2NV 28 2NV H8 H8 H 0 1 N N N -17.969 -24.703 -1.900 0.051 2.509 -0.435 H8 2NV 29 2NV H8A H8A H 0 1 N N N -19.245 -25.630 -1.042 1.256 2.712 -1.730 H8A 2NV 30 2NV H9 H9 H 0 1 N N N -17.318 -25.714 0.363 -0.682 1.512 -2.622 H9 2NV 31 2NV H9A H9A H 0 1 N N N -17.420 -27.315 -0.445 0.704 0.399 -2.539 H9A 2NV 32 2NV H11 H11 H 0 1 N N N -14.064 -25.536 -0.470 -2.217 -0.390 -2.491 H11 2NV 33 2NV H11A H11A H 0 0 N N N -15.377 -25.286 0.729 -0.830 -1.503 -2.408 H11A 2NV 34 2NV H12 H12 H 0 1 N N N -15.781 -27.780 0.642 -2.773 -2.566 -1.365 H12 2NV 35 2NV H12A H12A H 0 0 N N N -14.277 -27.915 -0.329 -1.574 -2.182 -0.107 H12A 2NV 36 2NV H14 H14 H 0 1 N N N -13.938 -29.535 1.400 -4.554 -2.500 0.312 H14 2NV 37 2NV H14A H14A H 0 0 N N N -13.272 -28.879 2.935 -3.355 -2.116 1.570 H14A 2NV 38 2NV H15 H15 H 0 1 N N N -15.562 -28.168 3.602 -5.547 -1.284 2.274 H15 2NV 39 2NV H15A H15A H 0 0 N N N -16.211 -28.881 2.086 -4.490 0.100 1.908 H15A 2NV 40 2NV H17 H17 H 0 1 N N N -17.626 -29.840 3.542 -7.514 0.097 1.816 H17 2NV 41 2NV H17A H17A H 0 0 N N N -17.112 -31.449 4.155 -6.457 1.481 1.450 H17A 2NV 42 2NV H18 H18 H 0 1 N N N -17.837 -29.967 6.020 -7.327 1.533 -0.871 H18 2NV 43 2NV H18A H18A H 0 0 N N N -16.090 -30.362 6.150 -8.385 0.149 -0.505 H18A 2NV 44 2NV H18B H18B H 0 0 N N N -16.604 -28.754 5.537 -8.647 1.709 0.310 H18B 2NV 45 2NV H2A H2A H 0 1 N N N -21.507 -30.579 -0.968 8.174 -1.841 0.024 H2A 2NV 46 2NV H2AA H2AA H 0 0 N N N -22.812 -29.347 -1.036 8.042 -0.747 1.422 H2AA 2NV 47 2NV H2AB H2AB H 0 0 N N N -23.223 -31.095 -1.089 7.069 -2.236 1.363 H2AB 2NV 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2NV N1 C2 SING N N 1 2NV N1 HN1 SING N N 2 2NV N1 HN1A SING N N 3 2NV C3 C2 SING N N 4 2NV C2 C2A SING N N 5 2NV C2 H2 SING N N 6 2NV O4 C3 SING N N 7 2NV C3 H3 SING N N 8 2NV C3 H3A SING N N 9 2NV C5 O4 SING N N 10 2NV C5 C6 SING N N 11 2NV C5 H5 SING N N 12 2NV C5 H5A SING N N 13 2NV O7 C6 SING N N 14 2NV C6 H6 SING N N 15 2NV C6 H6A SING N N 16 2NV O7 C8 SING N N 17 2NV C8 C9 SING N N 18 2NV C8 H8 SING N N 19 2NV C8 H8A SING N N 20 2NV O10 C9 SING N N 21 2NV C9 H9 SING N N 22 2NV C9 H9A SING N N 23 2NV O10 C11 SING N N 24 2NV C11 C12 SING N N 25 2NV C11 H11 SING N N 26 2NV C11 H11A SING N N 27 2NV C12 O13 SING N N 28 2NV C12 H12 SING N N 29 2NV C12 H12A SING N N 30 2NV O13 C14 SING N N 31 2NV C14 C15 SING N N 32 2NV C14 H14 SING N N 33 2NV C14 H14A SING N N 34 2NV C15 O16 SING N N 35 2NV C15 H15 SING N N 36 2NV C15 H15A SING N N 37 2NV O16 C17 SING N N 38 2NV C17 C18 SING N N 39 2NV C17 H17 SING N N 40 2NV C17 H17A SING N N 41 2NV C18 H18 SING N N 42 2NV C18 H18A SING N N 43 2NV C18 H18B SING N N 44 2NV C2A H2A SING N N 45 2NV C2A H2AA SING N N 46 2NV C2A H2AB SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2NV SMILES ACDLabs 12.01 "NC(C)COCCOCCOCCOCCOCC" 2NV InChI InChI 1.03 "InChI=1S/C13H29NO5/c1-3-15-4-5-16-6-7-17-8-9-18-10-11-19-12-13(2)14/h13H,3-12,14H2,1-2H3/t13-/m1/s1" 2NV InChIKey InChI 1.03 LPPZTQZWMYYVLK-CYBMUJFWSA-N 2NV SMILES_CANONICAL CACTVS 3.385 "CCOCCOCCOCCOCCOC[C@@H](C)N" 2NV SMILES CACTVS 3.385 "CCOCCOCCOCCOCCOC[CH](C)N" 2NV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCOCCOCCOCCOCCOC[C@@H](C)N" 2NV SMILES "OpenEye OEToolkits" 1.7.6 "CCOCCOCCOCCOCCOCC(C)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2NV "SYSTEMATIC NAME" ACDLabs 12.01 "(17R)-3,6,9,12,15-pentaoxaoctadecan-17-amine" 2NV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-1-[2-[2-[2-(2-ethoxyethoxy)ethoxy]ethoxy]ethoxy]propan-2-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2NV "Create component" 2014-04-21 RCSB 2NV "Initial release" 2014-04-30 RCSB 2NV "Modify descriptor" 2014-09-05 RCSB 2NV "Other modification" 2020-01-22 RCSB 2NV "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2NV _pdbx_chem_comp_synonyms.name "Jeffamine ED-2001" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##