data_2YP # _chem_comp.id 2YP _chem_comp.name "(2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H30 N2 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-24 _chem_comp.pdbx_modified_date 2014-05-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2YP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Q5K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2YP C1 C1 C 0 1 N N S -19.373 -1.342 -11.984 -1.695 -0.334 0.736 C1 2YP 1 2YP O1 O1 O 0 1 N N N -20.391 -2.029 -12.617 -0.746 0.722 0.575 O1 2YP 2 2YP C2 C2 C 0 1 N N R -18.436 -2.386 -11.403 -3.081 0.156 0.308 C2 2YP 3 2YP C3 C3 C 0 1 N N R -17.168 -1.733 -10.849 -4.081 -0.998 0.427 C3 2YP 4 2YP O3 O3 O 0 1 N N N -16.207 -2.743 -10.606 -5.362 -0.571 -0.040 O3 2YP 5 2YP C4 C4 C 0 1 N N S -16.571 -0.722 -11.822 -3.591 -2.173 -0.426 C4 2YP 6 2YP OAC OAC O 0 1 N N N -19.688 -4.928 -11.645 -2.519 2.757 -0.130 OAC 2YP 7 2YP CAB CAB C 0 1 N N N -19.722 -4.326 -10.561 -3.202 2.530 0.846 CAB 2YP 8 2YP CAA CAA C 0 1 N N N -20.471 -4.865 -9.385 -3.717 3.669 1.688 CAA 2YP 9 2YP N2 N2 N 0 1 N N N -19.110 -3.149 -10.366 -3.501 1.258 1.178 N2 2YP 10 2YP O4 O4 O 0 1 N N N -15.581 0.048 -11.144 -4.478 -3.282 -0.266 O4 2YP 11 2YP C5 C5 C 0 1 N N R -17.652 0.223 -12.334 -2.185 -2.573 0.030 C5 2YP 12 2YP C6 C6 C 0 1 N N N -17.150 1.209 -13.379 -1.665 -3.706 -0.856 C6 2YP 13 2YP O6 O6 O 0 1 N N N -16.621 0.565 -14.540 -0.403 -4.158 -0.359 O6 2YP 14 2YP O5 O5 O 0 1 N N N -18.700 -0.552 -12.940 -1.313 -1.446 -0.076 O5 2YP 15 2YP CA4 CA4 C 0 1 N N S -21.576 -1.298 -12.963 0.521 0.463 1.183 CA4 2YP 16 2YP CA3 CA3 C 0 1 N N R -22.306 -2.223 -13.932 1.495 -0.082 0.132 CA3 2YP 17 2YP OAH OAH O 0 1 N N N -23.037 -1.433 -14.880 2.699 -0.507 0.773 OAH 2YP 18 2YP CAI CAI C 0 1 N N R -22.498 -1.548 -16.208 3.365 -1.581 0.106 CAI 2YP 19 2YP CAJ CAJ C 0 1 N N N -21.288 -0.637 -16.343 2.851 -2.915 0.651 CAJ 2YP 20 2YP CAL CAL C 0 1 N N N -23.597 -1.261 -17.237 4.849 -1.479 0.346 CAL 2YP 21 2YP OAM OAM O 0 1 N N N -23.276 -0.917 -18.383 5.284 -0.633 1.092 OAM 2YP 22 2YP O O O 0 1 N N N -24.783 -1.410 -16.808 5.688 -2.328 -0.268 O 2YP 23 2YP CA5 CA5 C 0 1 N N R -22.413 -0.972 -11.725 1.097 1.770 1.753 CA5 2YP 24 2YP OA5 OA5 O 0 1 N N N -22.822 -2.210 -11.090 1.132 2.730 0.669 OA5 2YP 25 2YP CA6 CA6 C 0 1 N N N -23.753 -0.324 -12.041 2.598 1.535 2.044 CA6 2YP 26 2YP OA6 OA6 O 0 1 N N N -24.640 -1.448 -12.186 3.273 1.902 0.828 OA6 2YP 27 2YP CA1 CA1 C 0 1 N N R -23.861 -2.615 -11.942 2.257 2.282 -0.118 CA1 2YP 28 2YP CA2 CA2 C 0 1 N N R -23.271 -3.189 -13.234 1.816 1.022 -0.881 CA2 2YP 29 2YP NAD NAD N 0 1 N N N -22.631 -4.469 -12.967 0.622 1.322 -1.675 NAD 2YP 30 2YP CAE CAE C 0 1 N N N -23.132 -5.630 -13.342 0.750 1.814 -2.923 CAE 2YP 31 2YP OAG OAG O 0 1 N N N -24.189 -5.703 -13.957 1.849 1.920 -3.424 OAG 2YP 32 2YP CAF CAF C 0 1 N N N -22.338 -6.846 -12.964 -0.474 2.231 -3.697 CAF 2YP 33 2YP H1 H1 H 0 1 N N N -19.765 -0.715 -11.169 -1.724 -0.640 1.781 H1 2YP 34 2YP H2 H2 H 0 1 N N N -18.140 -3.068 -12.213 -3.043 0.500 -0.725 H2 2YP 35 2YP H3 H3 H 0 1 N N N -17.420 -1.215 -9.912 -4.157 -1.309 1.469 H3 2YP 36 2YP H4 H4 H 0 1 N N N -16.564 -3.382 -10.000 -6.045 -1.254 0.007 H4 2YP 37 2YP H5 H5 H 0 1 N N N -16.127 -1.259 -12.673 -3.564 -1.876 -1.474 H5 2YP 38 2YP H6 H6 H 0 1 N N N -20.943 -5.821 -9.657 -4.687 3.990 1.309 H6 2YP 39 2YP H7 H7 H 0 1 N N N -19.774 -5.025 -8.549 -3.821 3.339 2.721 H7 2YP 40 2YP H8 H8 H 0 1 N N N -21.247 -4.146 -9.083 -3.014 4.501 1.641 H8 2YP 41 2YP H9 H9 H 0 1 N N N -19.118 -2.769 -9.441 -3.993 1.072 1.993 H9 2YP 42 2YP H10 H10 H 0 1 N N N -14.899 -0.528 -10.819 -4.228 -4.063 -0.779 H10 2YP 43 2YP H11 H11 H 0 1 N N N -18.054 0.790 -11.481 -2.221 -2.909 1.066 H11 2YP 44 2YP H12 H12 H 0 1 N N N -16.359 1.826 -12.928 -2.376 -4.532 -0.845 H12 2YP 45 2YP H13 H13 H 0 1 N N N -17.988 1.853 -13.685 -1.544 -3.344 -1.877 H13 2YP 46 2YP H14 H14 H 0 1 N N N -16.323 1.221 -15.159 -0.013 -4.878 -0.874 H14 2YP 47 2YP H15 H15 H 0 1 N N N -21.315 -0.363 -13.480 0.399 -0.264 1.986 H15 2YP 48 2YP H16 H16 H 0 1 N N N -21.552 -2.822 -14.464 1.039 -0.927 -0.383 H16 2YP 49 2YP H17 H17 H 0 1 N N N -22.158 -2.582 -16.364 3.165 -1.524 -0.964 H17 2YP 50 2YP H18 H18 H 0 1 N N N -20.544 -0.899 -15.576 1.777 -2.989 0.477 H18 2YP 51 2YP H19 H19 H 0 1 N N N -20.845 -0.762 -17.342 3.358 -3.735 0.142 H19 2YP 52 2YP H20 H20 H 0 1 N N N -21.600 0.409 -16.209 3.050 -2.973 1.721 H20 2YP 53 2YP H21 H21 H 0 1 N N N -25.399 -1.216 -17.505 6.631 -2.224 -0.083 H21 2YP 54 2YP H22 H22 H 0 1 N N N -21.837 -0.339 -11.034 0.541 2.130 2.618 H22 2YP 55 2YP H23 H23 H 0 1 N N N -23.699 0.258 -12.973 2.928 2.168 2.867 H23 2YP 56 2YP H24 H24 H 0 1 N N N -24.078 0.330 -11.219 2.779 0.486 2.278 H24 2YP 57 2YP H25 H25 H 0 1 N N N -24.476 -3.389 -11.460 2.611 3.064 -0.790 H25 2YP 58 2YP H26 H26 H 0 1 N N N -24.110 -3.364 -13.924 2.619 0.691 -1.539 H26 2YP 59 2YP H27 H27 H 0 1 N N N -21.763 -4.468 -12.471 -0.260 1.167 -1.303 H27 2YP 60 2YP H28 H28 H 0 1 N N N -22.855 -7.748 -13.322 -1.354 2.148 -3.059 H28 2YP 61 2YP H29 H29 H 0 1 N N N -21.340 -6.789 -13.423 -0.361 3.264 -4.026 H29 2YP 62 2YP H30 H30 H 0 1 N N N -22.236 -6.892 -11.870 -0.593 1.584 -4.566 H30 2YP 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YP OAM CAL DOUB N N 1 2YP CAL O SING N N 2 2YP CAL CAI SING N N 3 2YP CAJ CAI SING N N 4 2YP CAI OAH SING N N 5 2YP OAH CA3 SING N N 6 2YP O6 C6 SING N N 7 2YP OAG CAE DOUB N N 8 2YP CA3 CA2 SING N N 9 2YP CA3 CA4 SING N N 10 2YP C6 C5 SING N N 11 2YP CAE NAD SING N N 12 2YP CAE CAF SING N N 13 2YP CA2 NAD SING N N 14 2YP CA2 CA1 SING N N 15 2YP CA4 O1 SING N N 16 2YP CA4 CA5 SING N N 17 2YP O5 C5 SING N N 18 2YP O5 C1 SING N N 19 2YP O1 C1 SING N N 20 2YP C5 C4 SING N N 21 2YP OA6 CA6 SING N N 22 2YP OA6 CA1 SING N N 23 2YP CA6 CA5 SING N N 24 2YP C1 C2 SING N N 25 2YP CA1 OA5 SING N N 26 2YP C4 O4 SING N N 27 2YP C4 C3 SING N N 28 2YP CA5 OA5 SING N N 29 2YP OAC CAB DOUB N N 30 2YP C2 C3 SING N N 31 2YP C2 N2 SING N N 32 2YP C3 O3 SING N N 33 2YP CAB N2 SING N N 34 2YP CAB CAA SING N N 35 2YP C1 H1 SING N N 36 2YP C2 H2 SING N N 37 2YP C3 H3 SING N N 38 2YP O3 H4 SING N N 39 2YP C4 H5 SING N N 40 2YP CAA H6 SING N N 41 2YP CAA H7 SING N N 42 2YP CAA H8 SING N N 43 2YP N2 H9 SING N N 44 2YP O4 H10 SING N N 45 2YP C5 H11 SING N N 46 2YP C6 H12 SING N N 47 2YP C6 H13 SING N N 48 2YP O6 H14 SING N N 49 2YP CA4 H15 SING N N 50 2YP CA3 H16 SING N N 51 2YP CAI H17 SING N N 52 2YP CAJ H18 SING N N 53 2YP CAJ H19 SING N N 54 2YP CAJ H20 SING N N 55 2YP O H21 SING N N 56 2YP CA5 H22 SING N N 57 2YP CA6 H23 SING N N 58 2YP CA6 H24 SING N N 59 2YP CA1 H25 SING N N 60 2YP CA2 H26 SING N N 61 2YP NAD H27 SING N N 62 2YP CAF H28 SING N N 63 2YP CAF H29 SING N N 64 2YP CAF H30 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2YP SMILES ACDLabs 12.01 "O=C(O)C(OC3C(OC1OC(CO)C(O)C(O)C1NC(=O)C)C2OC(OC2)C3NC(=O)C)C" 2YP InChI InChI 1.03 "InChI=1S/C19H30N2O12/c1-6(17(27)28)30-16-12(21-8(3)24)18-29-5-10(32-18)15(16)33-19-11(20-7(2)23)14(26)13(25)9(4-22)31-19/h6,9-16,18-19,22,25-26H,4-5H2,1-3H3,(H,20,23)(H,21,24)(H,27,28)/t6-,9-,10-,11-,12-,13-,14-,15-,16-,18-,19+/m1/s1" 2YP InChIKey InChI 1.03 MWWQKONGFKUAEK-STFZFCBQSA-N 2YP SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O[C@@H]1[C@@H](NC(C)=O)[C@@H]2OC[C@@H](O2)[C@H]1O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3NC(C)=O)C(O)=O" 2YP SMILES CACTVS 3.385 "C[CH](O[CH]1[CH](NC(C)=O)[CH]2OC[CH](O2)[CH]1O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3NC(C)=O)C(O)=O" 2YP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](C(=O)O)O[C@@H]1[C@H]([C@@H]2OC[C@H]([C@H]1O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)NC(=O)C)O2)NC(=O)C" 2YP SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(=O)O)OC1C(C2OCC(C1OC3C(C(C(C(O3)CO)O)O)NC(=O)C)O2)NC(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2YP "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-{[(1R,2S,3R,4R,5R)-4-(acetylamino)-2-{[(2S,3R,4R,5S,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}-6,8-dioxabicyclo[3.2.1]oct-3-yl]oxy}propanoic acid (non-preferred name)" 2YP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2YP "Create component" 2014-04-24 RCSB 2YP "Initial release" 2014-05-21 RCSB #