data_356 # _chem_comp.id 356 _chem_comp.name ;8-[(3R)-3-Aminopiperidin-1-yl]-7-but-2-yn-1-yl-3-methyl-1-[(4-methylquinazolin-2-yl)methyl]-3,7-dihydro-1H-purine-2,6-d ione ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H28 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Linagliptin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-10-10 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.542 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 356 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2RGU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 356 C1 C1 C 0 1 Y N N 49.469 47.430 35.436 -0.878 0.243 -0.408 C1 356 1 356 N2 N2 N 0 1 Y N N 48.132 47.720 35.828 -2.007 0.610 0.311 N2 356 2 356 C3 C3 C 0 1 Y N N 49.562 47.803 34.077 -1.080 -1.072 -0.812 C3 356 3 356 C4 C4 C 0 1 N N N 50.650 46.889 36.052 0.318 0.894 -0.762 C4 356 4 356 C5 C5 C 0 1 Y N N 47.571 48.305 34.693 -2.837 -0.467 0.313 C5 356 5 356 C6 C6 C 0 1 N N N 47.449 47.465 37.148 -2.257 1.907 0.945 C6 356 6 356 N7 N7 N 0 1 Y N N 48.426 48.315 33.720 -2.272 -1.456 -0.350 N7 356 7 356 N8 N8 N 0 1 N N N 50.739 47.604 33.363 -0.096 -1.701 -1.557 N8 356 8 356 N9 N9 N 0 1 N N N 51.810 46.743 35.297 1.240 0.230 -1.490 N9 356 9 356 O10 O10 O 0 1 N N N 50.629 46.571 37.236 0.518 2.045 -0.415 O10 356 10 356 N11 N11 N 0 1 N N N 46.327 48.843 34.506 -4.070 -0.520 0.921 N11 356 11 356 C12 C12 C 0 1 N N N 47.760 48.330 38.279 -2.937 2.797 -0.010 C12 356 12 356 C13 C13 C 0 1 N N N 51.833 47.089 33.969 1.032 -1.039 -1.879 C13 356 13 356 C14 C14 C 0 1 N N N 50.773 47.960 31.922 -0.285 -3.084 -2.000 C14 356 14 356 C15 C15 C 0 1 N N N 53.053 46.202 35.930 2.486 0.904 -1.862 C15 356 15 356 C16 C16 C 0 1 N N N 45.783 49.739 35.509 -4.696 -1.834 0.727 C16 356 16 356 C17 C17 C 0 1 N N N 45.401 48.345 33.539 -4.941 0.560 0.440 C17 356 17 356 C18 C18 C 0 1 N N N 47.946 48.971 39.233 -3.478 3.507 -0.772 C18 356 18 356 O19 O19 O 0 1 N N N 52.858 46.930 33.308 1.886 -1.606 -2.533 O19 356 19 356 C20 C20 C 0 1 Y N N 54.134 47.277 35.815 3.523 0.669 -0.793 C20 356 20 356 C21 C21 C 0 1 N N R 45.736 51.068 34.771 -5.994 -1.906 1.535 C21 356 21 356 C22 C22 C 0 1 N N N 45.041 49.604 32.677 -6.246 0.559 1.240 C22 356 22 356 C23 C23 C 0 1 N N N 48.151 49.750 40.449 -4.158 4.398 -1.727 C23 356 23 356 N24 N24 N 0 1 Y N N 53.748 48.543 35.901 4.304 -0.380 -0.897 N24 356 24 356 N25 N25 N 0 1 Y N N 55.412 46.927 35.613 3.608 1.532 0.208 N25 356 25 356 C26 C26 C 0 1 N N N 44.776 50.918 33.543 -6.940 -0.795 1.072 C26 356 26 356 N27 N27 N 0 1 N N N 45.264 52.100 35.695 -6.631 -3.213 1.324 N27 356 27 356 C28 C28 C 0 1 Y N N 54.625 49.551 35.788 5.236 -0.621 0.032 C28 356 28 356 C29 C29 C 0 1 Y N N 56.393 47.839 35.483 4.496 1.388 1.171 C29 356 29 356 C30 C30 C 0 1 Y N N 56.037 49.236 35.561 5.357 0.277 1.124 C30 356 30 356 C31 C31 C 0 1 Y N N 54.213 50.903 35.879 6.092 -1.730 -0.042 C31 356 31 356 C32 C32 C 0 1 N N N 57.826 47.398 35.261 4.575 2.378 2.304 C32 356 32 356 C33 C33 C 0 1 Y N N 56.982 50.303 35.433 6.331 0.046 2.107 C33 356 33 356 C34 C34 C 0 1 Y N N 55.158 51.918 35.752 7.023 -1.927 0.932 C34 356 34 356 C35 C35 C 0 1 Y N N 56.537 51.618 35.528 7.138 -1.048 2.007 C35 356 35 356 H61 H61 H 0 1 N N N 46.369 47.567 36.965 -2.888 1.766 1.823 H61 356 36 356 H62 H62 H 0 1 N N N 47.814 46.474 37.456 -1.309 2.352 1.247 H62 356 37 356 H141 H141 H 0 0 N N N 50.781 49.055 31.814 0.586 -3.405 -2.572 H141 356 38 356 H142 H142 H 0 0 N N N 51.679 47.540 31.462 -0.406 -3.731 -1.131 H142 356 39 356 H143 H143 H 0 0 N N N 49.883 47.549 31.422 -1.174 -3.147 -2.626 H143 356 40 356 H151 H151 H 0 0 N N N 52.866 45.965 36.988 2.845 0.506 -2.810 H151 356 41 356 H152 H152 H 0 0 N N N 53.372 45.278 35.426 2.305 1.974 -1.962 H152 356 42 356 H161 H161 H 0 0 N N N 44.785 49.421 35.845 -4.918 -1.978 -0.330 H161 356 43 356 H162 H162 H 0 0 N N N 46.380 49.774 36.432 -4.015 -2.615 1.064 H162 356 44 356 H171 H171 H 0 0 N N N 44.508 47.921 34.021 -4.437 1.518 0.569 H171 356 45 356 H172 H172 H 0 0 N N N 45.821 47.527 32.935 -5.162 0.405 -0.616 H172 356 46 356 H21 H21 H 0 1 N N N 46.732 51.359 34.405 -5.771 -1.777 2.594 H21 356 47 356 H221 H221 H 0 0 N N N 45.883 49.806 31.998 -6.027 0.728 2.294 H221 356 48 356 H222 H222 H 0 0 N N N 44.108 49.375 32.142 -6.898 1.351 0.872 H222 356 49 356 H231 H231 H 0 0 N N N 48.203 49.073 41.314 -4.344 5.363 -1.255 H231 356 50 356 H232 H232 H 0 0 N N N 49.092 50.314 40.369 -3.527 4.538 -2.605 H232 356 51 356 H233 H233 H 0 0 N N N 47.313 50.450 40.581 -5.106 3.952 -2.028 H233 356 52 356 H261 H261 H 0 0 N N N 44.918 51.792 32.890 -7.195 -0.947 0.023 H261 356 53 356 H262 H262 H 0 0 N N N 43.753 50.843 33.940 -7.849 -0.816 1.674 H262 356 54 356 H271 H271 H 0 0 N N N 45.156 51.707 36.608 -7.491 -3.285 1.847 H271 356 55 356 H272 H272 H 0 0 N N N 45.929 52.846 35.730 -6.791 -3.383 0.342 H272 356 56 356 H31 H31 H 0 1 N N N 53.174 51.145 36.046 6.012 -2.424 -0.866 H31 356 57 356 H321 H321 H 0 0 N N N 58.014 47.291 34.183 5.277 3.171 2.046 H321 356 58 356 H322 H322 H 0 0 N N N 58.510 48.151 35.680 3.589 2.810 2.478 H322 356 59 356 H323 H323 H 0 0 N N N 57.993 46.432 35.760 4.914 1.871 3.207 H323 356 60 356 H33 H33 H 0 1 N N N 58.027 50.090 35.265 6.430 0.720 2.945 H33 356 61 356 H34 H34 H 0 1 N N N 54.843 52.949 35.824 7.681 -2.782 0.873 H34 356 62 356 H35 H35 H 0 1 N N N 57.247 52.426 35.431 7.888 -1.226 2.763 H35 356 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 356 C14 N8 SING N N 1 356 C22 C17 SING N N 2 356 C22 C26 SING N N 3 356 O19 C13 DOUB N N 4 356 N8 C13 SING N N 5 356 N8 C3 SING N N 6 356 C17 N11 SING N N 7 356 C26 C21 SING N N 8 356 N7 C3 SING Y N 9 356 N7 C5 DOUB Y N 10 356 C13 N9 SING N N 11 356 C3 C1 DOUB Y N 12 356 N11 C5 SING N N 13 356 N11 C16 SING N N 14 356 C5 N2 SING Y N 15 356 C21 C16 SING N N 16 356 C21 N27 SING N N 17 356 C32 C29 SING N N 18 356 N9 C15 SING N N 19 356 N9 C4 SING N N 20 356 C33 C35 DOUB Y N 21 356 C33 C30 SING Y N 22 356 C1 N2 SING Y N 23 356 C1 C4 SING N N 24 356 C29 C30 DOUB Y N 25 356 C29 N25 SING Y N 26 356 C35 C34 SING Y N 27 356 C30 C28 SING Y N 28 356 N25 C20 DOUB Y N 29 356 C34 C31 DOUB Y N 30 356 C28 C31 SING Y N 31 356 C28 N24 DOUB Y N 32 356 C20 N24 SING Y N 33 356 C20 C15 SING N N 34 356 N2 C6 SING N N 35 356 C4 O10 DOUB N N 36 356 C6 C12 SING N N 37 356 C12 C18 TRIP N N 38 356 C18 C23 SING N N 39 356 C6 H61 SING N N 40 356 C6 H62 SING N N 41 356 C14 H141 SING N N 42 356 C14 H142 SING N N 43 356 C14 H143 SING N N 44 356 C15 H151 SING N N 45 356 C15 H152 SING N N 46 356 C16 H161 SING N N 47 356 C16 H162 SING N N 48 356 C17 H171 SING N N 49 356 C17 H172 SING N N 50 356 C21 H21 SING N N 51 356 C22 H221 SING N N 52 356 C22 H222 SING N N 53 356 C23 H231 SING N N 54 356 C23 H232 SING N N 55 356 C23 H233 SING N N 56 356 C26 H261 SING N N 57 356 C26 H262 SING N N 58 356 N27 H271 SING N N 59 356 N27 H272 SING N N 60 356 C31 H31 SING N N 61 356 C32 H321 SING N N 62 356 C32 H322 SING N N 63 356 C32 H323 SING N N 64 356 C33 H33 SING N N 65 356 C34 H34 SING N N 66 356 C35 H35 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 356 SMILES ACDLabs 10.04 "O=C2N(c1nc(n(c1C(=O)N2Cc4nc3ccccc3c(n4)C)CC#CC)N5CCCC(N)C5)C" 356 SMILES_CANONICAL CACTVS 3.341 "CC#CCn1c(nc2N(C)C(=O)N(Cc3nc(C)c4ccccc4n3)C(=O)c12)N5CCC[C@@H](N)C5" 356 SMILES CACTVS 3.341 "CC#CCn1c(nc2N(C)C(=O)N(Cc3nc(C)c4ccccc4n3)C(=O)c12)N5CCC[CH](N)C5" 356 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC#CCn1c2c(nc1N3CCC[C@H](C3)N)N(C(=O)N(C2=O)Cc4nc(c5ccccc5n4)C)C" 356 SMILES "OpenEye OEToolkits" 1.5.0 "CC#CCn1c2c(nc1N3CCCC(C3)N)N(C(=O)N(C2=O)Cc4nc(c5ccccc5n4)C)C" 356 InChI InChI 1.03 "InChI=1S/C25H28N8O2/c1-4-5-13-32-21-22(29-24(32)31-12-8-9-17(26)14-31)30(3)25(35)33(23(21)34)15-20-27-16(2)18-10-6-7-11-19(18)28-20/h6-7,10-11,17H,8-9,12-15,26H2,1-3H3/t17-/m1/s1" 356 InChIKey InChI 1.03 LTXREWYXXSTFRX-QGZVFWFLSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 356 "SYSTEMATIC NAME" ACDLabs 10.04 "8-[(3R)-3-aminopiperidin-1-yl]-7-but-2-yn-1-yl-3-methyl-1-[(4-methylquinazolin-2-yl)methyl]-3,7-dihydro-1H-purine-2,6-dione" 356 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "8-[(3R)-3-aminopiperidin-1-yl]-7-but-2-ynyl-3-methyl-1-[(4-methylquinazolin-2-yl)methyl]purine-2,6-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 356 "Create component" 2007-10-10 RCSB 356 "Modify aromatic_flag" 2011-06-04 RCSB 356 "Modify descriptor" 2011-06-04 RCSB 356 "Modify synonyms" 2016-03-28 RCSB 356 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 356 _pdbx_chem_comp_synonyms.name Linagliptin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##