data_3CP # _chem_comp.id 3CP _chem_comp.name "3-CARBOXYPROPYL-COENZYME A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAC _chem_comp.formula "C25 H42 N7 O18 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 853.623 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3CP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6REQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3CP C8 C8 C 0 1 Y N N -27.015 112.087 41.604 -3.831 -0.810 -4.457 C8 3CP 1 3CP N9 N9 N 0 1 Y N N -28.193 112.719 41.747 -3.549 -0.910 -5.787 N9 3CP 2 3CP C4 C4 C 0 1 Y N N -28.385 113.370 40.548 -4.690 -1.339 -6.417 C4 3CP 3 3CP C5 C5 C 0 1 Y N N -27.280 113.082 39.785 -5.654 -1.497 -5.408 C5 3CP 4 3CP N7 N7 N 0 1 Y N N -26.378 112.259 40.436 -5.066 -1.155 -4.237 N7 3CP 5 3CP N3 N3 N 0 1 Y N N -29.436 114.136 40.190 -5.018 -1.621 -7.674 N3 3CP 6 3CP C2 C2 C 0 1 Y N N -29.298 114.617 38.993 -6.232 -2.032 -7.975 C2 3CP 7 3CP N1 N1 N 0 1 Y N N -28.249 114.412 38.130 -7.173 -2.190 -7.062 N1 3CP 8 3CP C6 C6 C 0 1 Y N N -27.214 113.644 38.494 -6.936 -1.938 -5.778 C6 3CP 9 3CP N6 N6 N 0 1 N N N -26.227 113.464 37.631 -7.928 -2.107 -4.829 N6 3CP 10 3CP "C1'" "C1'" C 0 1 N N R -29.085 112.677 42.911 -2.266 -0.609 -6.426 "C1'" 3CP 11 3CP "C2'" "C2'" C 0 1 N N R -29.898 111.388 42.876 -2.159 0.900 -6.758 "C2'" 3CP 12 3CP "O2'" "O2'" O 0 1 N N N -31.099 111.447 42.090 -2.748 1.186 -8.029 "O2'" 3CP 13 3CP "C3'" "C3'" C 0 1 N N S -30.244 111.190 44.336 -0.623 1.116 -6.800 "C3'" 3CP 14 3CP "O3'" "O3'" O 0 1 N N N -31.288 112.096 44.662 -0.149 1.079 -8.148 "O3'" 3CP 15 3CP "C4'" "C4'" C 0 1 N N R -28.965 111.677 45.030 -0.058 -0.066 -5.990 "C4'" 3CP 16 3CP "O4'" "O4'" O 0 1 N N N -28.334 112.628 44.102 -1.175 -0.830 -5.507 "O4'" 3CP 17 3CP "C5'" "C5'" C 0 1 N N N -27.915 110.633 45.316 0.763 0.457 -4.810 "C5'" 3CP 18 3CP "O5'" "O5'" O 0 1 N N N -27.516 110.072 44.044 1.276 -0.645 -4.060 "O5'" 3CP 19 3CP P1 P1 P 0 1 N N S -27.667 108.477 43.876 2.125 -0.024 -2.841 P1 3CP 20 3CP O11 O11 O 0 1 N N N -27.295 108.024 42.583 1.241 0.815 -2.002 O11 3CP 21 3CP O12 O12 O 0 1 N N N -28.988 108.087 44.452 3.324 0.877 -3.426 O12 3CP 22 3CP O6 O6 O 0 1 N N N -26.488 108.005 44.946 2.737 -1.217 -1.950 O6 3CP 23 3CP P2 P2 P 0 1 N N R -26.596 107.136 46.303 3.568 -0.528 -0.756 P2 3CP 24 3CP O21 O21 O 0 1 N N N -27.366 107.819 47.329 2.662 0.318 0.050 O21 3CP 25 3CP O22 O22 O 0 1 N N N -25.258 106.720 46.729 4.743 0.381 -1.376 O22 3CP 26 3CP O7 O7 O 0 1 N N N -27.429 105.922 46.063 4.211 -1.669 0.179 O7 3CP 27 3CP CPB CPB C 0 1 N N N -26.689 104.921 45.323 4.932 -0.998 1.213 CPB 3CP 28 3CP CPA CPA C 0 1 N N N -27.674 103.766 45.110 5.571 -2.031 2.143 CPA 3CP 29 3CP CP7 CP7 C 0 1 N N R -27.951 103.169 46.501 6.343 -1.312 3.251 CP7 3CP 30 3CP CP9 CP9 C 0 1 N N N -27.251 102.620 44.271 4.478 -2.902 2.766 CP9 3CP 31 3CP CP8 CP8 C 0 1 N N N -29.056 104.173 44.529 6.531 -2.913 1.342 CP8 3CP 32 3CP OP3 OP3 O 0 1 N N N -28.756 102.025 46.343 7.449 -0.608 2.681 OP3 3CP 33 3CP CP6 CP6 C 0 1 N N N -26.661 102.758 47.245 5.431 -0.336 3.947 CP6 3CP 34 3CP OP2 OP2 O 0 1 N N N -26.041 103.670 47.827 5.587 0.856 3.792 OP2 3CP 35 3CP NP2 NP2 N 0 1 N N N -26.372 101.471 47.210 4.441 -0.788 4.742 NP2 3CP 36 3CP CP5 CP5 C 0 1 N N N -25.132 101.048 47.963 3.604 0.159 5.482 CP5 3CP 37 3CP CP4 CP4 C 0 1 N N N -25.254 99.567 48.400 2.565 -0.608 6.302 CP4 3CP 38 3CP CP3 CP3 C 0 1 N N N -23.998 99.103 49.140 1.705 0.366 7.063 CP3 3CP 39 3CP OP1 OP1 O 0 1 N N N -23.139 99.955 49.426 1.904 1.558 6.961 OP1 3CP 40 3CP NP1 NP1 N 0 1 N N N -23.892 97.805 49.413 0.715 -0.085 7.858 NP1 3CP 41 3CP CP2 CP2 C 0 1 N N N -22.659 97.255 50.160 -0.120 0.862 8.598 CP2 3CP 42 3CP CP1 CP1 C 0 1 N N N -22.735 95.703 49.999 -1.159 0.094 9.417 CP1 3CP 43 3CP P3 P3 P 0 1 N N N -32.792 111.678 44.963 0.570 2.491 -8.427 P3 3CP 44 3CP O31 O31 O 0 1 N N N -33.378 111.329 43.660 1.693 2.668 -7.480 O31 3CP 45 3CP O32 O32 O 0 1 N N N -33.380 112.754 45.794 1.130 2.519 -9.936 O32 3CP 46 3CP O33 O33 O 0 1 N N N -32.746 110.382 45.890 -0.493 3.684 -8.228 O33 3CP 47 3CP S S S 0 1 N N N -21.339 94.969 50.895 -2.195 1.268 10.334 S 3CP 48 3CP CS1 CS1 C 0 1 N N N -20.814 93.575 49.901 -3.301 0.113 11.189 CS1 3CP 49 3CP CS2 CS2 C 0 1 N N N -19.587 92.915 50.404 -4.293 0.898 12.049 CS2 3CP 50 3CP CS3 CS3 C 0 1 N N N -19.817 91.405 50.364 -5.226 -0.076 12.770 CS3 3CP 51 3CP CS4 CS4 C 0 1 N N N -21.012 91.181 51.288 -6.203 0.696 13.618 CS4 3CP 52 3CP OS4 OS4 O 0 1 N N N -22.103 90.795 50.806 -6.157 1.903 13.643 OS4 3CP 53 3CP OS5 OS5 O 0 1 N N N -20.889 91.412 52.524 -7.124 0.044 14.345 OS5 3CP 54 3CP H8 H8 H 0 1 N N N -26.592 111.458 42.405 -3.132 -0.491 -3.698 H8 3CP 55 3CP H2 H2 H 0 1 N N N -30.143 115.253 38.683 -6.467 -2.248 -9.006 H2 3CP 56 3CP H61 1H6 H 0 1 N N N -26.179 113.870 36.696 -8.809 -2.412 -5.097 H61 3CP 57 3CP H62 2H6 H 0 1 N N N -26.119 112.456 37.516 -7.743 -1.920 -3.895 H62 3CP 58 3CP "H1'" "H1'" H 0 1 N N N -29.732 113.584 42.880 -2.137 -1.210 -7.327 "H1'" 3CP 59 3CP "H2'" "H2'" H 0 1 N N N -29.319 110.564 42.396 -2.616 1.504 -5.975 "H2'" 3CP 60 3CP "HO'2" "2HO'" H 0 0 N N N -31.605 110.643 42.068 -3.682 0.945 -7.964 "HO'2" 3CP 61 3CP "H3'" "H3'" H 0 1 N N N -30.555 110.154 44.605 -0.358 2.062 -6.330 "H3'" 3CP 62 3CP "H4'" "H4'" H 0 1 N N N -29.287 112.078 46.018 0.567 -0.688 -6.629 "H4'" 3CP 63 3CP "H5'1" "1H5'" H 0 0 N N N -27.056 111.026 45.909 0.128 1.068 -4.168 "H5'1" 3CP 64 3CP "H5'2" "2H5'" H 0 0 N N N -28.252 109.862 46.047 1.590 1.060 -5.182 "H5'2" 3CP 65 3CP H12 H12 H 0 1 N N N -29.077 107.146 44.352 3.875 0.293 -3.965 H12 3CP 66 3CP H22 H22 H 0 1 N N N -25.321 106.208 47.527 5.309 -0.207 -1.893 H22 3CP 67 3CP HB1 1HB H 0 1 N N N -26.234 105.303 44.379 4.248 -0.370 1.784 HB1 3CP 68 3CP HB2 2HB H 0 1 N N N -25.735 104.614 45.811 5.711 -0.377 0.770 HB2 3CP 69 3CP HP7 HP7 H 0 1 N N N -28.455 103.955 47.109 6.711 -2.043 3.971 HP7 3CP 70 3CP HP91 1HP9 H 0 0 N N N -27.967 101.779 44.116 3.727 -2.265 3.231 HP91 3CP 71 3CP HP92 2HP9 H 0 0 N N N -26.920 103.001 43.276 4.010 -3.508 1.990 HP92 3CP 72 3CP HP93 3HP9 H 0 0 N N N -26.294 102.210 44.672 4.919 -3.555 3.519 HP93 3CP 73 3CP HP81 1HP8 H 0 0 N N N -29.772 103.332 44.374 7.347 -2.303 0.955 HP81 3CP 74 3CP HP82 2HP8 H 0 0 N N N -29.521 104.961 45.164 6.935 -3.692 1.989 HP82 3CP 75 3CP HP83 3HP8 H 0 0 N N N -28.920 104.741 43.579 5.995 -3.373 0.511 HP83 3CP 76 3CP HOP3 3HOP H 0 0 N N N -28.927 101.656 47.201 7.081 0.026 2.052 HOP3 3CP 77 3CP HN2 HN2 H 0 1 N N N -27.015 100.886 46.676 4.282 -1.742 4.824 HN2 3CP 78 3CP HP51 1HP5 H 0 0 N N N -24.203 101.234 47.375 4.230 0.750 6.151 HP51 3CP 79 3CP HP52 2HP5 H 0 0 N N N -24.917 101.721 48.825 3.097 0.821 4.781 HP52 3CP 80 3CP HP41 1HP4 H 0 0 N N N -26.174 99.392 49.005 1.939 -1.199 5.633 HP41 3CP 81 3CP HP42 2HP4 H 0 0 N N N -25.489 98.902 47.535 3.073 -1.270 7.003 HP42 3CP 82 3CP HN1 HN1 H 0 1 N N N -24.694 97.272 49.075 0.556 -1.038 7.940 HN1 3CP 83 3CP HP21 1HP2 H 0 0 N N N -21.693 97.695 49.817 0.505 1.453 9.267 HP21 3CP 84 3CP HP22 2HP2 H 0 0 N N N -22.588 97.593 51.220 -0.627 1.524 7.896 HP22 3CP 85 3CP HP11 1HP1 H 0 0 N N N -23.718 95.285 50.319 -1.785 -0.495 8.748 HP11 3CP 86 3CP HP12 2HP1 H 0 0 N N N -22.775 95.383 48.931 -0.652 -0.567 10.119 HP12 3CP 87 3CP H32 H32 H 0 1 N N N -34.278 112.504 45.973 1.553 3.380 -10.062 H32 3CP 88 3CP H33 H33 H 0 1 N N N -33.644 110.132 46.069 -1.206 3.531 -8.862 H33 3CP 89 3CP HS11 1HS1 H 0 0 N N N -21.641 92.836 49.790 -3.847 -0.478 10.453 HS11 3CP 90 3CP HS12 2HS1 H 0 0 N N N -20.690 93.876 48.834 -2.713 -0.549 11.824 HS12 3CP 91 3CP HS21 1HS2 H 0 0 N N N -18.670 93.227 49.851 -3.747 1.489 12.784 HS21 3CP 92 3CP HS22 2HS2 H 0 0 N N N -19.282 93.279 51.413 -4.880 1.560 11.414 HS22 3CP 93 3CP HS31 1HS3 H 0 0 N N N -19.949 90.990 49.337 -5.772 -0.668 12.035 HS31 3CP 94 3CP HS32 2HS3 H 0 0 N N N -18.918 90.799 50.625 -4.639 -0.739 13.406 HS32 3CP 95 3CP HOS5 5HOS H 0 0 N N N -21.632 91.272 53.098 -7.750 0.540 14.889 HOS5 3CP 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3CP C8 N9 SING Y N 1 3CP C8 N7 DOUB Y N 2 3CP C8 H8 SING N N 3 3CP N9 C4 SING Y N 4 3CP N9 "C1'" SING N N 5 3CP C4 C5 SING Y N 6 3CP C4 N3 DOUB Y N 7 3CP C5 N7 SING Y N 8 3CP C5 C6 DOUB Y N 9 3CP N3 C2 SING Y N 10 3CP C2 N1 DOUB Y N 11 3CP C2 H2 SING N N 12 3CP N1 C6 SING Y N 13 3CP C6 N6 SING N N 14 3CP N6 H61 SING N N 15 3CP N6 H62 SING N N 16 3CP "C1'" "C2'" SING N N 17 3CP "C1'" "O4'" SING N N 18 3CP "C1'" "H1'" SING N N 19 3CP "C2'" "O2'" SING N N 20 3CP "C2'" "C3'" SING N N 21 3CP "C2'" "H2'" SING N N 22 3CP "O2'" "HO'2" SING N N 23 3CP "C3'" "O3'" SING N N 24 3CP "C3'" "C4'" SING N N 25 3CP "C3'" "H3'" SING N N 26 3CP "O3'" P3 SING N N 27 3CP "C4'" "O4'" SING N N 28 3CP "C4'" "C5'" SING N N 29 3CP "C4'" "H4'" SING N N 30 3CP "C5'" "O5'" SING N N 31 3CP "C5'" "H5'1" SING N N 32 3CP "C5'" "H5'2" SING N N 33 3CP "O5'" P1 SING N N 34 3CP P1 O11 DOUB N N 35 3CP P1 O12 SING N N 36 3CP P1 O6 SING N N 37 3CP O12 H12 SING N N 38 3CP O6 P2 SING N N 39 3CP P2 O21 DOUB N N 40 3CP P2 O22 SING N N 41 3CP P2 O7 SING N N 42 3CP O22 H22 SING N N 43 3CP O7 CPB SING N N 44 3CP CPB CPA SING N N 45 3CP CPB HB1 SING N N 46 3CP CPB HB2 SING N N 47 3CP CPA CP7 SING N N 48 3CP CPA CP9 SING N N 49 3CP CPA CP8 SING N N 50 3CP CP7 OP3 SING N N 51 3CP CP7 CP6 SING N N 52 3CP CP7 HP7 SING N N 53 3CP CP9 HP91 SING N N 54 3CP CP9 HP92 SING N N 55 3CP CP9 HP93 SING N N 56 3CP CP8 HP81 SING N N 57 3CP CP8 HP82 SING N N 58 3CP CP8 HP83 SING N N 59 3CP OP3 HOP3 SING N N 60 3CP CP6 OP2 DOUB N N 61 3CP CP6 NP2 SING N N 62 3CP NP2 CP5 SING N N 63 3CP NP2 HN2 SING N N 64 3CP CP5 CP4 SING N N 65 3CP CP5 HP51 SING N N 66 3CP CP5 HP52 SING N N 67 3CP CP4 CP3 SING N N 68 3CP CP4 HP41 SING N N 69 3CP CP4 HP42 SING N N 70 3CP CP3 OP1 DOUB N N 71 3CP CP3 NP1 SING N N 72 3CP NP1 CP2 SING N N 73 3CP NP1 HN1 SING N N 74 3CP CP2 CP1 SING N N 75 3CP CP2 HP21 SING N N 76 3CP CP2 HP22 SING N N 77 3CP CP1 S SING N N 78 3CP CP1 HP11 SING N N 79 3CP CP1 HP12 SING N N 80 3CP P3 O31 DOUB N N 81 3CP P3 O32 SING N N 82 3CP P3 O33 SING N N 83 3CP O32 H32 SING N N 84 3CP O33 H33 SING N N 85 3CP S CS1 SING N N 86 3CP CS1 CS2 SING N N 87 3CP CS1 HS11 SING N N 88 3CP CS1 HS12 SING N N 89 3CP CS2 CS3 SING N N 90 3CP CS2 HS21 SING N N 91 3CP CS2 HS22 SING N N 92 3CP CS3 CS4 SING N N 93 3CP CS3 HS31 SING N N 94 3CP CS3 HS32 SING N N 95 3CP CS4 OS4 DOUB N N 96 3CP CS4 OS5 SING N N 97 3CP OS5 HOS5 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3CP SMILES ACDLabs 10.04 "O=C(O)CCCSCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O" 3CP SMILES_CANONICAL CACTVS 3.341 "CC(C)(CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSCCCC(O)=O" 3CP SMILES CACTVS 3.341 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSCCCC(O)=O" 3CP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)(CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSCCCC(=O)O)O" 3CP SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSCCCC(=O)O)O" 3CP InChI InChI 1.03 ;InChI=1S/C25H42N7O18P3S/c1-25(2,20(37)23(38)28-6-5-15(33)27-7-9-54-8-3-4-16(34)35)11-47-53(44,45)50-52(42,43)46-10-14-19(49-51(39,40)41)18(36)24(48-14)32-13-31-17-21(26)29-12-30-22(17)32/h12-14,18-20,24,36-37H,3-11H2,1-2H3,(H,27,33)(H,28,38)(H,34,35)(H,42,43)(H,44,45)(H2,26,29,30)(H2,39,40,41)/t14-,18-,19-,20+,24-/m1/s1 ; 3CP InChIKey InChI 1.03 PDZSKLWSGCQECH-CITAKDKDSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3CP "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14-dioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphadocosan-22-oic acid 3,5-dioxide (non-preferred name)" 3CP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-2-hydroxy-3,3-dimethyl-butanoyl]amino]propanoylamino]ethylsulfanyl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3CP "Create component" 1999-07-08 RCSB 3CP "Modify descriptor" 2011-06-04 RCSB #