data_3GO # _chem_comp.id 3GO _chem_comp.name ;4-[[(2R,3S,4R,5R)-5-[6-amino-8-(quinolin-6-ylmethylamino)purin-9-yl]-3,4-dihydroxy-oxolan-2-yl]methoxymethyl]benzonitri le ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H26 N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5'-O-(4-cyanobenzyl)-8-[(quinolin-6-ylmethyl)amino]adenosine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-01-28 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 538.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3GO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3FZM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3GO C28 C28 C 0 1 Y N N 20.632 -3.107 3.835 -4.636 -1.730 1.244 C28 3GO 1 3GO C35 C35 C 0 1 Y N N 21.444 -3.851 4.687 -5.399 -2.817 0.787 C35 3GO 2 3GO C40 C40 C 0 1 Y N N 20.879 -4.659 5.667 -5.241 -4.104 1.334 C40 3GO 3 3GO C39 C39 C 0 1 Y N N 21.708 -5.394 6.499 -6.017 -5.114 0.841 C39 3GO 4 3GO C38 C38 C 0 1 Y N N 23.094 -5.302 6.342 -6.934 -4.853 -0.175 C38 3GO 5 3GO N37 N37 N 0 1 Y N N 23.624 -4.515 5.388 -7.078 -3.653 -0.683 N37 3GO 6 3GO C36 C36 C 0 1 Y N N 22.829 -3.792 4.558 -6.350 -2.621 -0.245 C36 3GO 7 3GO C27 C27 C 0 1 Y N N 23.399 -2.985 3.579 -6.509 -1.336 -0.792 C27 3GO 8 3GO C26 C26 C 0 1 Y N N 22.581 -2.238 2.724 -5.752 -0.305 -0.326 C26 3GO 9 3GO C25 C25 C 0 1 Y N N 21.201 -2.304 2.850 -4.819 -0.500 0.689 C25 3GO 10 3GO C24 C24 C 0 1 N N N 20.304 -1.480 1.912 -4.000 0.666 1.180 C24 3GO 11 3GO N23 N23 N 0 1 N N N 18.940 -2.078 1.855 -2.767 0.762 0.394 N23 3GO 12 3GO C6 C6 C 0 1 Y N N 18.609 -2.906 0.855 -1.852 1.760 0.663 C6 3GO 13 3GO N7 N7 N 0 1 Y N N 19.427 -3.313 -0.128 -1.984 2.671 1.595 N7 3GO 14 3GO C8 C8 C 0 1 Y N N 18.740 -4.120 -0.927 -0.902 3.490 1.581 C8 3GO 15 3GO C4 C4 C 0 1 Y N N 19.084 -4.821 -2.065 -0.504 4.609 2.329 C4 3GO 16 3GO N10 N10 N 0 1 N N N 20.326 -4.745 -2.560 -1.304 5.101 3.348 N10 3GO 17 3GO N1 N1 N 0 1 Y N N 18.132 -5.593 -2.690 0.657 5.187 2.037 N1 3GO 18 3GO C2 C2 C 0 1 Y N N 16.848 -5.656 -2.165 1.425 4.725 1.068 C2 3GO 19 3GO N3 N3 N 0 1 Y N N 16.535 -4.975 -1.061 1.092 3.678 0.341 N3 3GO 20 3GO C9 C9 C 0 1 Y N N 17.459 -4.214 -0.431 -0.050 3.037 0.561 C9 3GO 21 3GO N5 N5 N 0 1 Y N N 17.397 -3.477 0.661 -0.669 1.943 0.002 N5 3GO 22 3GO C11 C11 C 0 1 N N R 16.198 -3.295 1.504 -0.158 1.126 -1.101 C11 3GO 23 3GO O12 O12 O 0 1 N N N 15.935 -1.897 1.644 1.248 0.852 -0.914 O12 3GO 24 3GO C31 C31 C 0 1 N N R 16.486 -3.750 2.910 -0.234 1.908 -2.431 C31 3GO 25 3GO O34 O34 O 0 1 N N N 16.328 -5.181 3.012 -1.397 1.530 -3.169 O34 3GO 26 3GO C32 C32 C 0 1 N N S 15.417 -3.053 3.711 1.047 1.490 -3.187 C32 3GO 27 3GO O33 O33 O 0 1 N N N 14.241 -3.855 3.747 0.714 0.840 -4.415 O33 3GO 28 3GO C13 C13 C 0 1 N N R 15.135 -1.764 2.905 1.746 0.504 -2.224 C13 3GO 29 3GO C14 C14 C 0 1 N N N 15.662 -0.580 3.670 3.264 0.687 -2.284 C14 3GO 30 3GO O15 O15 O 0 1 N N N 17.094 -0.627 3.644 3.892 -0.262 -1.419 O15 3GO 31 3GO C16 C16 C 0 1 N N N 17.600 0.295 4.494 5.318 -0.176 -1.401 C16 3GO 32 3GO C17 C17 C 0 1 Y N N 18.901 0.015 5.234 5.872 -1.217 -0.462 C17 3GO 33 3GO C18 C18 C 0 1 Y N N 20.011 0.822 5.017 6.184 -2.478 -0.939 C18 3GO 34 3GO C19 C19 C 0 1 Y N N 21.195 0.565 5.689 6.691 -3.435 -0.085 C19 3GO 35 3GO C20 C20 C 0 1 Y N N 21.267 -0.499 6.594 6.890 -3.129 1.263 C20 3GO 36 3GO C29 C29 C 0 1 N N N 22.487 -0.762 7.300 7.416 -4.118 2.155 C29 3GO 37 3GO N30 N30 N 0 1 N N N 23.451 -0.973 7.866 7.834 -4.903 2.862 N30 3GO 38 3GO C21 C21 C 0 1 Y N N 20.154 -1.301 6.813 6.573 -1.855 1.737 C21 3GO 39 3GO C22 C22 C 0 1 Y N N 18.972 -1.045 6.129 6.071 -0.906 0.872 C22 3GO 40 3GO H28 H28 H 0 1 N N N 19.558 -3.153 3.938 -3.912 -1.868 2.033 H28 3GO 41 3GO H40 H40 H 0 1 N N N 19.806 -4.713 5.779 -4.525 -4.289 2.122 H40 3GO 42 3GO H39 H39 H 0 1 N N N 21.287 -6.032 7.262 -5.921 -6.113 1.239 H39 3GO 43 3GO H38 H38 H 0 1 N N N 23.745 -5.868 6.992 -7.542 -5.661 -0.555 H38 3GO 44 3GO H27 H27 H 0 1 N N N 24.473 -2.935 3.479 -7.228 -1.168 -1.580 H27 3GO 45 3GO H26 H26 H 0 1 N N N 23.024 -1.610 1.966 -5.878 0.680 -0.751 H26 3GO 46 3GO H24 H24 H 0 1 N N N 20.233 -0.449 2.289 -4.574 1.586 1.068 H24 3GO 47 3GO H24A H24A H 0 0 N N N 20.741 -1.480 0.902 -3.750 0.518 2.230 H24A 3GO 48 3GO HN23 HN23 H 0 0 N N N 18.834 -2.606 2.698 -2.593 0.123 -0.315 HN23 3GO 49 3GO HN10 HN10 H 0 0 N N N 20.287 -4.726 -3.559 -2.149 4.671 3.552 HN10 3GO 50 3GO HN1A HN1A H 0 0 N N N 20.766 -3.911 -2.228 -1.019 5.875 3.858 HN1A 3GO 51 3GO H2 H2 H 0 1 N N N 16.098 -6.260 -2.653 2.361 5.223 0.864 H2 3GO 52 3GO H11 H11 H 0 1 N N N 15.372 -3.852 1.039 -0.719 0.194 -1.175 H11 3GO 53 3GO H31 H31 H 0 1 N N N 17.508 -3.521 3.245 -0.235 2.982 -2.243 H31 3GO 54 3GO HO34 HO34 H 0 0 N N N 16.293 -5.559 2.141 -1.495 1.991 -4.014 HO34 3GO 55 3GO H32 H32 H 0 1 N N N 15.719 -2.859 4.751 1.681 2.357 -3.374 H32 3GO 56 3GO HO33 HO33 H 0 0 N N N 14.006 -4.034 4.650 0.221 1.396 -5.033 HO33 3GO 57 3GO H13 H13 H 0 1 N N N 14.060 -1.627 2.715 1.477 -0.523 -2.472 H13 3GO 58 3GO H14 H14 H 0 1 N N N 15.310 0.352 3.204 3.609 0.532 -3.306 H14 3GO 59 3GO H14A H14A H 0 0 N N N 15.302 -0.611 4.709 3.521 1.696 -1.963 H14A 3GO 60 3GO H16 H16 H 0 1 N N N 17.779 1.198 3.893 5.706 -0.349 -2.405 H16 3GO 61 3GO H16A H16A H 0 0 N N N 16.850 0.347 5.297 5.618 0.815 -1.061 H16A 3GO 62 3GO H18 H18 H 0 1 N N N 19.951 1.649 4.325 6.030 -2.713 -1.981 H18 3GO 63 3GO H19 H19 H 0 1 N N N 22.061 1.186 5.514 6.934 -4.419 -0.458 H19 3GO 64 3GO H21 H21 H 0 1 N N N 20.207 -2.121 7.513 6.724 -1.612 2.779 H21 3GO 65 3GO H22 H22 H 0 1 N N N 18.107 -1.671 6.293 5.829 0.082 1.236 H22 3GO 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3GO C28 C35 DOUB Y N 1 3GO C28 C25 SING Y N 2 3GO C35 C40 SING Y N 3 3GO C35 C36 SING Y N 4 3GO C40 C39 DOUB Y N 5 3GO C39 C38 SING Y N 6 3GO C38 N37 DOUB Y N 7 3GO N37 C36 SING Y N 8 3GO C36 C27 DOUB Y N 9 3GO C27 C26 SING Y N 10 3GO C26 C25 DOUB Y N 11 3GO C25 C24 SING N N 12 3GO C24 N23 SING N N 13 3GO N23 C6 SING N N 14 3GO C6 N7 DOUB Y N 15 3GO C6 N5 SING Y N 16 3GO N7 C8 SING Y N 17 3GO C8 C4 DOUB Y N 18 3GO C8 C9 SING Y N 19 3GO C4 N10 SING N N 20 3GO C4 N1 SING Y N 21 3GO N1 C2 DOUB Y N 22 3GO C2 N3 SING Y N 23 3GO N3 C9 DOUB Y N 24 3GO C9 N5 SING Y N 25 3GO N5 C11 SING N N 26 3GO C11 O12 SING N N 27 3GO C11 C31 SING N N 28 3GO O12 C13 SING N N 29 3GO C31 O34 SING N N 30 3GO C31 C32 SING N N 31 3GO C32 O33 SING N N 32 3GO C32 C13 SING N N 33 3GO C13 C14 SING N N 34 3GO C14 O15 SING N N 35 3GO O15 C16 SING N N 36 3GO C16 C17 SING N N 37 3GO C17 C18 DOUB Y N 38 3GO C17 C22 SING Y N 39 3GO C18 C19 SING Y N 40 3GO C19 C20 DOUB Y N 41 3GO C20 C29 SING N N 42 3GO C20 C21 SING Y N 43 3GO C29 N30 TRIP N N 44 3GO C21 C22 DOUB Y N 45 3GO C28 H28 SING N N 46 3GO C40 H40 SING N N 47 3GO C39 H39 SING N N 48 3GO C38 H38 SING N N 49 3GO C27 H27 SING N N 50 3GO C26 H26 SING N N 51 3GO C24 H24 SING N N 52 3GO C24 H24A SING N N 53 3GO N23 HN23 SING N N 54 3GO N10 HN10 SING N N 55 3GO N10 HN1A SING N N 56 3GO C2 H2 SING N N 57 3GO C11 H11 SING N N 58 3GO C31 H31 SING N N 59 3GO O34 HO34 SING N N 60 3GO C32 H32 SING N N 61 3GO O33 HO33 SING N N 62 3GO C13 H13 SING N N 63 3GO C14 H14 SING N N 64 3GO C14 H14A SING N N 65 3GO C16 H16 SING N N 66 3GO C16 H16A SING N N 67 3GO C18 H18 SING N N 68 3GO C19 H19 SING N N 69 3GO C21 H21 SING N N 70 3GO C22 H22 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3GO SMILES ACDLabs 10.04 "N#Cc1ccc(cc1)COCC6OC(n3c(nc2c(ncnc23)N)NCc5cc4cccnc4cc5)C(O)C6O" 3GO SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n([C@@H]3O[C@H](COCc4ccc(cc4)C#N)[C@@H](O)[C@H]3O)c(NCc5ccc6ncccc6c5)nc12" 3GO SMILES CACTVS 3.341 "Nc1ncnc2n([CH]3O[CH](COCc4ccc(cc4)C#N)[CH](O)[CH]3O)c(NCc5ccc6ncccc6c5)nc12" 3GO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc2cc(ccc2nc1)CNc3nc4c(ncnc4n3[C@H]5[C@@H]([C@@H]([C@H](O5)COCc6ccc(cc6)C#N)O)O)N" 3GO SMILES "OpenEye OEToolkits" 1.5.0 "c1cc2cc(ccc2nc1)CNc3nc4c(ncnc4n3C5C(C(C(O5)COCc6ccc(cc6)C#N)O)O)N" 3GO InChI InChI 1.03 "InChI=1S/C28H26N8O4/c29-11-16-3-5-17(6-4-16)13-39-14-21-23(37)24(38)27(40-21)36-26-22(25(30)33-15-34-26)35-28(36)32-12-18-7-8-20-19(10-18)2-1-9-31-20/h1-10,15,21,23-24,27,37-38H,12-14H2,(H,32,35)(H2,30,33,34)/t21-,23-,24-,27-/m1/s1" 3GO InChIKey InChI 1.03 DKJUQSPQYGQPBH-VBHAUSMQSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3GO "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-(4-cyanobenzyl)-8-[(quinolin-6-ylmethyl)amino]adenosine" 3GO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[[(2R,3S,4R,5R)-5-[6-amino-8-(quinolin-6-ylmethylamino)purin-9-yl]-3,4-dihydroxy-oxolan-2-yl]methoxymethyl]benzonitrile" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3GO "Create component" 2009-01-28 PDBJ 3GO "Modify aromatic_flag" 2011-06-04 RCSB 3GO "Modify descriptor" 2011-06-04 RCSB 3GO "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 3GO _pdbx_chem_comp_synonyms.name "5'-O-(4-cyanobenzyl)-8-[(quinolin-6-ylmethyl)amino]adenosine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##