data_3H9 # _chem_comp.id 3H9 _chem_comp.name "(S)-3-Hydroxyhexanoyl-CoA" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H42 N7 O18 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -4 _chem_comp.pdbx_initial_date 2011-07-29 _chem_comp.pdbx_modified_date 2012-08-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 877.645 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3H9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZWA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3H9 C1 C1 C 0 1 N N N -46.983 13.167 -20.116 13.334 1.762 0.669 C1 3H9 1 3H9 O1 O1 O 0 1 N N N -47.687 14.090 -19.722 12.988 1.963 -0.476 O1 3H9 2 3H9 C2 C2 C 0 1 N N N -46.930 11.816 -19.426 14.582 2.415 1.206 C2 3H9 3 3H9 C3 C3 C 0 1 N N S -48.104 11.518 -18.469 15.218 3.274 0.112 C3 3H9 4 3H9 O3 O3 O 0 1 N N N -49.163 10.924 -19.219 14.340 4.351 -0.220 O3 3H9 5 3H9 C4 C4 C 0 1 N N N -47.666 10.444 -17.459 16.549 3.837 0.615 C4 3H9 6 3H9 C5 C5 C 0 1 N N N -47.033 11.056 -16.202 17.244 4.593 -0.519 C5 3H9 7 3H9 C6 C6 C 0 1 N N N -47.248 10.154 -14.988 18.575 5.156 -0.016 C6 3H9 8 3H9 N1A N1A N 0 1 Y N N -42.775 19.632 -20.174 -7.868 7.415 -0.830 N1A 3H9 9 3H9 O1A O1A O 0 1 N N N -42.033 26.623 -27.705 -5.457 -2.722 -2.383 O1A 3H9 10 3H9 P1A P1A P 0 1 N N N -43.131 25.793 -27.174 -4.952 -2.764 -0.923 P1A 3H9 11 3H9 C1B C1B C 0 1 N N R -41.357 23.589 -23.046 -7.319 2.395 0.386 C1B 3H9 12 3H9 S1P S1P S 0 1 N N N -46.020 13.401 -21.537 12.401 0.740 1.678 S1P 3H9 13 3H9 C2A C2A C 0 1 Y N N -41.731 20.437 -20.056 -8.159 6.804 0.304 C2A 3H9 14 3H9 O2A O2A O -1 1 N N N -43.362 24.510 -27.884 -5.462 -4.051 -0.239 O2A 3H9 15 3H9 P2A P2A P 0 1 N N N -45.812 26.744 -27.772 -2.211 -3.458 -1.814 P2A 3H9 16 3H9 C2B C2B C 0 1 N N R -40.621 23.711 -24.348 -8.762 1.830 0.361 C2B 3H9 17 3H9 O2B O2B O 0 1 N N N -39.445 22.986 -24.102 -9.634 2.623 1.170 O2B 3H9 18 3H9 C2P C2P C 0 1 N N N -46.326 15.173 -21.792 11.082 0.281 0.526 C2P 3H9 19 3H9 N3A N3A N 0 1 Y N N -41.512 21.420 -20.927 -7.969 5.513 0.480 N3A 3H9 20 3H9 O3A O3A O 0 1 N N N -44.376 26.831 -26.957 -3.342 -2.751 -0.912 O3A 3H9 21 3H9 C3B C3B C 0 1 N N S -40.303 25.205 -24.398 -8.569 0.421 0.973 C3B 3H9 22 3H9 O3B O3B O 0 1 N N N -39.212 25.445 -23.509 -8.899 0.431 2.364 O3B 3H9 23 3H9 P3B P3B P 0 1 N N N -37.997 26.423 -23.863 -10.039 -0.511 3.000 P3B 3H9 24 3H9 C3P C3P C 0 1 N N N -47.153 15.324 -23.039 10.098 -0.658 1.227 C3P 3H9 25 3H9 C4A C4A C 0 1 Y N N -42.348 21.631 -21.955 -7.467 4.764 -0.496 C4A 3H9 26 3H9 O4A O4A O 0 1 N N N -46.684 27.857 -27.318 -2.642 -4.906 -2.138 O4A 3H9 27 3H9 C4B C4B C 0 1 N N R -41.502 25.854 -23.741 -7.069 0.127 0.777 C4B 3H9 28 3H9 O4B O4B O 0 1 N N N -42.118 24.826 -22.917 -6.502 1.246 0.076 O4B 3H9 29 3H9 N4P N4P N 0 1 N N N -47.048 16.711 -23.408 9.030 -1.029 0.295 N4P 3H9 30 3H9 C5A C5A C 0 1 Y N N -43.471 20.817 -22.122 -7.141 5.367 -1.722 C5A 3H9 31 3H9 O5A O5A O -1 1 N N N -45.594 26.418 -29.212 -2.032 -2.667 -3.129 O5A 3H9 32 3H9 C5B C5B C 0 1 N N N -42.548 26.428 -24.730 -6.893 -1.148 -0.049 C5B 3H9 33 3H9 O5B O5B O 0 1 N N N -42.895 25.455 -25.673 -5.505 -1.478 -0.127 O5B 3H9 34 3H9 C5P C5P C 0 1 N N N -46.446 17.108 -24.504 8.043 -1.855 0.695 C5P 3H9 35 3H9 O5P O5P O 0 1 N N N -45.917 16.338 -25.302 8.039 -2.291 1.827 O5P 3H9 36 3H9 C6A C6A C 0 1 Y N N -43.667 19.791 -21.186 -7.362 6.748 -1.862 C6A 3H9 37 3H9 N6A N6A N 0 1 N N N -44.704 18.959 -21.268 -7.060 7.397 -3.046 N6A 3H9 38 3H9 O6A O6A O 0 1 N N N -46.467 25.509 -26.983 -0.818 -3.481 -1.007 O6A 3H9 39 3H9 C6P C6P C 0 1 N N N -46.498 18.625 -24.716 6.945 -2.237 -0.264 C6P 3H9 40 3H9 N7A N7A N 0 1 Y N N -44.111 21.247 -23.220 -6.655 4.394 -2.530 N7A 3H9 41 3H9 O7A O7A O -1 1 N N N -37.554 27.093 -22.503 -9.673 -2.014 2.753 O7A 3H9 42 3H9 C7P C7P C 0 1 N N N -45.697 19.059 -25.948 5.960 -3.176 0.437 C7P 3H9 43 3H9 C8A C8A C 0 1 Y N N -43.428 22.304 -23.692 -6.662 3.259 -1.893 C8A 3H9 44 3H9 O8A O8A O 0 1 N N N -36.936 25.673 -24.455 -10.137 -0.244 4.541 O8A 3H9 45 3H9 N8P N8P N 0 1 N N N -45.736 20.517 -26.154 4.893 -3.548 -0.495 N8P 3H9 46 3H9 N9A N9A N 0 1 Y N N -42.349 22.524 -22.926 -7.154 3.435 -0.633 N9A 3H9 47 3H9 O9A O9A O -1 1 N N N -38.772 27.518 -24.659 -11.417 -0.192 2.326 O9A 3H9 48 3H9 C9P C9P C 0 1 N N N -46.361 21.070 -27.192 3.906 -4.374 -0.095 C9P 3H9 49 3H9 O9P O9P O 0 1 N N N -46.910 20.448 -28.103 3.950 -4.883 1.005 O9P 3H9 50 3H9 CAP CAP C 0 1 N N R -46.233 22.573 -27.263 2.747 -4.664 -1.014 CAP 3H9 51 3H9 OAP OAP O 0 1 N N N -45.084 22.975 -26.509 3.048 -4.184 -2.326 OAP 3H9 52 3H9 CBP CBP C 0 1 N N N -47.514 23.357 -26.816 1.492 -3.964 -0.489 CBP 3H9 53 3H9 CCP CCP C 0 1 N N N -47.458 24.724 -27.538 0.354 -4.135 -1.497 CCP 3H9 54 3H9 CDP CDP C 0 1 N N N -48.805 22.679 -27.271 1.085 -4.582 0.850 CDP 3H9 55 3H9 CEP CEP C 0 1 N N N -47.563 23.563 -25.291 1.783 -2.474 -0.296 CEP 3H9 56 3H9 H2 H2 H 0 1 N N N -46.935 11.043 -20.208 14.324 3.044 2.058 H2 3H9 57 3H9 H2A H2A H 0 1 N N N -46.003 11.781 -18.835 15.287 1.646 1.521 H2A 3H9 58 3H9 H3 H3 H 0 1 N N N -48.411 12.451 -17.974 15.394 2.663 -0.774 H3 3H9 59 3H9 HO3 HO3 H 0 1 N N N -49.893 10.735 -18.642 14.139 4.938 0.523 HO3 3H9 60 3H9 H4 H4 H 0 1 N N N -48.551 9.863 -17.159 16.364 4.518 1.446 H4 3H9 61 3H9 H4A H4A H 0 1 N N N -46.925 9.790 -17.942 17.186 3.019 0.951 H4A 3H9 62 3H9 H5 H5 H 0 1 N N N -45.953 11.180 -16.369 17.429 3.911 -1.350 H5 3H9 63 3H9 H5A H5A H 0 1 N N N -47.497 12.034 -16.008 16.608 5.411 -0.855 H5A 3H9 64 3H9 H6 H6 H 0 1 N N N -46.786 10.614 -14.102 19.071 5.694 -0.824 H6 3H9 65 3H9 H6A H6A H 0 1 N N N -48.326 10.025 -14.814 18.390 5.837 0.815 H6A 3H9 66 3H9 H6B H6B H 0 1 N N N -46.787 9.173 -15.174 19.212 4.338 0.320 H6B 3H9 67 3H9 H1B H1B H 0 1 N N N -40.587 23.372 -22.291 -7.076 2.784 1.375 H1B 3H9 68 3H9 H2AA H2AA H 0 0 N N N -41.043 20.294 -19.236 -8.568 7.385 1.117 H2AA 3H9 69 3H9 H2B H2B H 0 1 N N N -41.125 23.367 -25.263 -9.136 1.763 -0.660 H2B 3H9 70 3H9 HO2B HO2B H 0 0 N N N -38.896 23.000 -24.877 -9.715 3.541 0.877 HO2B 3H9 71 3H9 H2P H2P H 0 1 N N N -46.867 15.590 -20.929 10.558 1.178 0.198 H2P 3H9 72 3H9 H2PA H2PA H 0 0 N N N -45.371 15.707 -21.907 11.514 -0.224 -0.338 H2PA 3H9 73 3H9 H3B H3B H 0 1 N N N -40.083 25.560 -25.415 -9.176 -0.312 0.443 H3B 3H9 74 3H9 H3P H3P H 0 1 N N N -46.770 14.677 -23.842 10.622 -1.555 1.555 H3P 3H9 75 3H9 H3PA H3PA H 0 0 N N N -48.201 15.049 -22.848 9.666 -0.153 2.091 H3PA 3H9 76 3H9 H4B H4B H 0 1 N N N -41.154 26.724 -23.166 -6.584 0.012 1.747 H4B 3H9 77 3H9 HN4P HN4P H 0 0 N N N -47.450 17.400 -22.805 9.034 -0.681 -0.611 HN4P 3H9 78 3H9 H5B H5B H 0 1 N N N -43.447 26.733 -24.173 -7.435 -1.967 0.425 H5B 3H9 79 3H9 H5BA H5BA H 0 0 N N N -42.121 27.300 -25.247 -7.285 -0.987 -1.054 H5BA 3H9 80 3H9 HN6A HN6A H 0 0 N N N -44.662 18.299 -20.518 -7.218 8.351 -3.130 HN6A 3H9 81 3H9 HN6B HN6B H 0 0 N N N -45.555 19.480 -21.206 -6.691 6.899 -3.792 HN6B 3H9 82 3H9 H6P H6P H 0 1 N N N -47.547 18.925 -24.855 6.421 -1.340 -0.592 H6P 3H9 83 3H9 H6PA H6PA H 0 0 N N N -46.074 19.119 -23.829 7.377 -2.743 -1.128 H6PA 3H9 84 3H9 H7P H7P H 0 1 N N N -44.649 18.753 -25.810 6.485 -4.074 0.765 H7P 3H9 85 3H9 H7PA H7PA H 0 0 N N N -46.126 18.569 -26.835 5.529 -2.671 1.301 H7PA 3H9 86 3H9 H8A H8A H 0 1 N N N -43.706 22.888 -24.557 -6.328 2.317 -2.301 H8A 3H9 87 3H9 HN8P HN8P H 0 0 N N N -45.278 21.111 -25.493 4.897 -3.200 -1.401 HN8P 3H9 88 3H9 HAP HAP H 0 1 N N N -46.110 22.838 -28.324 2.575 -5.740 -1.051 HAP 3H9 89 3H9 HOAP HOAP H 0 0 N N N -44.520 23.512 -27.053 3.214 -3.232 -2.368 HOAP 3H9 90 3H9 HCP HCP H 0 1 N N N -48.428 25.232 -27.431 0.147 -5.196 -1.635 HCP 3H9 91 3H9 HCPA HCPA H 0 0 N N N -47.241 24.564 -28.604 0.644 -3.694 -2.451 HCPA 3H9 92 3H9 HDP HDP H 0 1 N N N -49.669 23.269 -26.932 1.863 -4.393 1.589 HDP 3H9 93 3H9 HDPA HDPA H 0 0 N N N -48.816 22.611 -28.369 0.148 -4.138 1.186 HDPA 3H9 94 3H9 HDPB HDPB H 0 0 N N N -48.860 21.668 -26.840 0.954 -5.658 0.728 HDPB 3H9 95 3H9 HEP HEP H 0 1 N N N -48.476 24.116 -25.024 2.073 -2.034 -1.249 HEP 3H9 96 3H9 HEPA HEPA H 0 0 N N N -47.567 22.584 -24.789 0.888 -1.975 0.078 HEPA 3H9 97 3H9 HEPB HEPB H 0 0 N N N -46.681 24.136 -24.970 2.594 -2.353 0.423 HEPB 3H9 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3H9 C1 O1 DOUB N N 1 3H9 C1 C2 SING N N 2 3H9 C1 S1P SING N N 3 3H9 C2 C3 SING N N 4 3H9 C3 O3 SING N N 5 3H9 C3 C4 SING N N 6 3H9 C4 C5 SING N N 7 3H9 C5 C6 SING N N 8 3H9 N1A C2A DOUB Y N 9 3H9 N1A C6A SING Y N 10 3H9 O1A P1A DOUB N N 11 3H9 P1A O2A SING N N 12 3H9 P1A O3A SING N N 13 3H9 P1A O5B SING N N 14 3H9 C1B C2B SING N N 15 3H9 C1B O4B SING N N 16 3H9 C1B N9A SING N N 17 3H9 S1P C2P SING N N 18 3H9 C2A N3A SING Y N 19 3H9 P2A O3A SING N N 20 3H9 P2A O4A DOUB N N 21 3H9 P2A O5A SING N N 22 3H9 P2A O6A SING N N 23 3H9 C2B O2B SING N N 24 3H9 C2B C3B SING N N 25 3H9 C2P C3P SING N N 26 3H9 N3A C4A DOUB Y N 27 3H9 C3B O3B SING N N 28 3H9 C3B C4B SING N N 29 3H9 O3B P3B SING N N 30 3H9 P3B O7A SING N N 31 3H9 P3B O8A DOUB N N 32 3H9 P3B O9A SING N N 33 3H9 C3P N4P SING N N 34 3H9 C4A C5A SING Y N 35 3H9 C4A N9A SING Y N 36 3H9 C4B O4B SING N N 37 3H9 C4B C5B SING N N 38 3H9 N4P C5P SING N N 39 3H9 C5A C6A DOUB Y N 40 3H9 C5A N7A SING Y N 41 3H9 C5B O5B SING N N 42 3H9 C5P O5P DOUB N N 43 3H9 C5P C6P SING N N 44 3H9 C6A N6A SING N N 45 3H9 O6A CCP SING N N 46 3H9 C6P C7P SING N N 47 3H9 N7A C8A DOUB Y N 48 3H9 C7P N8P SING N N 49 3H9 C8A N9A SING Y N 50 3H9 N8P C9P SING N N 51 3H9 C9P O9P DOUB N N 52 3H9 C9P CAP SING N N 53 3H9 CAP OAP SING N N 54 3H9 CAP CBP SING N N 55 3H9 CBP CCP SING N N 56 3H9 CBP CDP SING N N 57 3H9 CBP CEP SING N N 58 3H9 C2 H2 SING N N 59 3H9 C2 H2A SING N N 60 3H9 C3 H3 SING N N 61 3H9 O3 HO3 SING N N 62 3H9 C4 H4 SING N N 63 3H9 C4 H4A SING N N 64 3H9 C5 H5 SING N N 65 3H9 C5 H5A SING N N 66 3H9 C6 H6 SING N N 67 3H9 C6 H6A SING N N 68 3H9 C6 H6B SING N N 69 3H9 C1B H1B SING N N 70 3H9 C2A H2AA SING N N 71 3H9 C2B H2B SING N N 72 3H9 O2B HO2B SING N N 73 3H9 C2P H2P SING N N 74 3H9 C2P H2PA SING N N 75 3H9 C3B H3B SING N N 76 3H9 C3P H3P SING N N 77 3H9 C3P H3PA SING N N 78 3H9 C4B H4B SING N N 79 3H9 N4P HN4P SING N N 80 3H9 C5B H5B SING N N 81 3H9 C5B H5BA SING N N 82 3H9 N6A HN6A SING N N 83 3H9 N6A HN6B SING N N 84 3H9 C6P H6P SING N N 85 3H9 C6P H6PA SING N N 86 3H9 C7P H7P SING N N 87 3H9 C7P H7PA SING N N 88 3H9 C8A H8A SING N N 89 3H9 N8P HN8P SING N N 90 3H9 CAP HAP SING N N 91 3H9 OAP HOAP SING N N 92 3H9 CCP HCP SING N N 93 3H9 CCP HCPA SING N N 94 3H9 CDP HDP SING N N 95 3H9 CDP HDPA SING N N 96 3H9 CDP HDPB SING N N 97 3H9 CEP HEP SING N N 98 3H9 CEP HEPA SING N N 99 3H9 CEP HEPB SING N N 100 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3H9 InChI InChI 1.03 ;InChI=1S/C27H46N7O18P3S/c1-4-5-15(35)10-18(37)56-9-8-29-17(36)6-7-30-25(40)22(39)27(2,3)12-49-55(46,47)52-54(44,45)48-11-16-21(51-53(41,42)43)20(38)26(50-16)34-14-33-19-23(28)31-13-32-24(19)34/h13-16,20-22,26,35,38-39H,4-12H2,1-3H3,(H,29,36)(H,30,40)(H,44,45)(H,46,47)(H2,28,31,32)(H2,41,42,43)/p-4/t15-,16+,20+,21+,22-,26+/m0/s1 ; 3H9 InChIKey InChI 1.03 VAAHKRMGOFIORX-IKTBLOROSA-J 3H9 SMILES_CANONICAL CACTVS 3.370 "CCC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P]([O-])(=O)O[P]([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P]([O-])([O-])=O)n2cnc3c(N)ncnc23" 3H9 SMILES CACTVS 3.370 "CCC[CH](O)CC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P]([O-])(=O)O[P]([O-])(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P]([O-])([O-])=O)n2cnc3c(N)ncnc23" 3H9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CCC[C@@H](CC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)([O-])OP(=O)([O-])OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)([O-])[O-])O)O" 3H9 SMILES "OpenEye OEToolkits" 1.7.2 "CCCC(CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)([O-])OP(=O)([O-])OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)([O-])[O-])O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3H9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 ;[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-2-[[[[(3R)-2,2-dimethyl-3-oxidanyl-4-[[3-[2-[(3S)-3-oxidanylhexanoyl]sulfanylethylamino]-3-oxidanylidene-propyl]amino]-4-oxidanylidene-butoxy]-oxidanidyl-phosphoryl]oxy-oxidanidyl-phosphoryl]oxymethyl]-4-oxidanyl-oxolan-3-yl] phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3H9 "Create component" 2011-07-29 EBI #