data_3K3 # _chem_comp.id 3K3 _chem_comp.name "5-({(1R,1aS,6bR)-1-[5-(trifluoromethyl)-1H-benzimidazol-2-yl]-1a,6b-dihydro-1H-cyclopropa[b][1]benzofuran-5-yl}oxy)-3,4-dihydro-1,8-naphthyridin-2(1H)-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H17 F3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-08-28 _chem_comp.pdbx_modified_date 2016-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.423 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3K3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4R5Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3K3 F2 F2 F 0 1 N N N 17.744 -12.948 -17.473 -6.985 3.398 -0.490 F2 3K3 1 3K3 C19 C19 C 0 1 N N N 18.371 -12.274 -18.428 -7.688 2.236 -0.154 C19 3K3 2 3K3 F F F 0 1 N N N 17.809 -12.506 -19.607 -8.441 2.464 1.003 F 3K3 3 3K3 F1 F1 F 0 1 N N N 18.257 -10.983 -18.158 -8.542 1.888 -1.206 F1 3K3 4 3K3 C18 C18 C 0 1 Y N N 19.836 -12.654 -18.419 -6.713 1.113 0.094 C18 3K3 5 3K3 C17 C17 C 0 1 Y N N 20.333 -13.765 -19.102 -7.040 0.105 0.990 C17 3K3 6 3K3 C16 C16 C 0 1 Y N N 21.692 -14.068 -19.056 -6.161 -0.929 1.229 C16 3K3 7 3K3 C20 C20 C 0 1 Y N N 20.714 -11.849 -17.700 -5.520 1.095 -0.571 C20 3K3 8 3K3 C21 C21 C 0 1 Y N N 22.069 -12.151 -17.647 -4.613 0.056 -0.345 C21 3K3 9 3K3 C15 C15 C 0 1 Y N N 22.559 -13.258 -18.327 -4.941 -0.962 0.567 C15 3K3 10 3K3 N N N 0 1 Y N N 23.897 -13.298 -18.102 -3.865 -1.827 0.576 N 3K3 11 3K3 N1 N1 N 0 1 Y N N 23.110 -11.555 -17.036 -3.381 -0.235 -0.836 N1 3K3 12 3K3 C14 C14 C 0 1 Y N N 24.237 -12.251 -17.303 -2.942 -1.333 -0.292 C14 3K3 13 3K3 C13 C13 C 0 1 N N R 25.603 -11.895 -16.809 -1.609 -1.969 -0.589 C13 3K3 14 3K3 C9 C9 C 0 1 N N S 26.710 -12.550 -17.644 -1.103 -3.035 0.385 C9 3K3 15 3K3 O2 O2 O 0 1 N N N 28.009 -11.947 -17.451 -0.087 -3.942 -0.043 O2 3K3 16 3K3 C10 C10 C 0 1 N N R 26.347 -13.111 -16.261 -0.446 -1.644 0.351 C10 3K3 17 3K3 C11 C11 C 0 1 Y N N 27.458 -12.649 -15.395 0.964 -1.928 -0.117 C11 3K3 18 3K3 C8 C8 C 0 1 Y N N 28.381 -11.978 -16.134 1.074 -3.294 -0.320 C8 3K3 19 3K3 C7 C7 C 0 1 Y N N 29.520 -11.435 -15.556 2.291 -3.816 -0.758 C7 3K3 20 3K3 C6 C6 C 0 1 Y N N 29.694 -11.591 -14.179 3.366 -2.983 -0.985 C6 3K3 21 3K3 C12 C12 C 0 1 Y N N 27.602 -12.800 -14.015 2.038 -1.092 -0.343 C12 3K3 22 3K3 C5 C5 C 0 1 Y N N 28.739 -12.257 -13.399 3.247 -1.617 -0.779 C5 3K3 23 3K3 O1 O1 O 0 1 N N N 28.939 -12.401 -12.041 4.307 -0.796 -1.003 O1 3K3 24 3K3 C4 C4 C 0 1 Y N N 28.808 -11.353 -11.159 4.877 -0.185 0.067 C4 3K3 25 3K3 C22 C22 C 0 1 Y N N 28.486 -10.090 -11.633 4.471 -0.492 1.366 C22 3K3 26 3K3 C23 C23 C 0 1 Y N N 28.346 -9.035 -10.744 5.074 0.151 2.427 C23 3K3 27 3K3 N2 N2 N 0 1 Y N N 28.508 -9.228 -9.429 6.024 1.046 2.230 N2 3K3 28 3K3 C24 C24 C 0 1 Y N N 28.809 -10.447 -8.929 6.440 1.367 1.012 C24 3K3 29 3K3 N3 N3 N 0 1 N N N 28.955 -10.577 -7.590 7.447 2.318 0.848 N3 3K3 30 3K3 C C C 0 1 N N N 29.623 -11.584 -7.036 7.629 2.924 -0.338 C 3K3 31 3K3 O O O 0 1 N N N 29.840 -11.623 -5.835 8.520 3.738 -0.464 O 3K3 32 3K3 C3 C3 C 0 1 Y N N 28.969 -11.527 -9.787 5.883 0.757 -0.102 C3 3K3 33 3K3 C2 C2 C 0 1 N N N 29.302 -12.878 -9.201 6.362 1.119 -1.482 C2 3K3 34 3K3 C1 C1 C 0 1 N N N 30.122 -12.705 -7.925 6.744 2.606 -1.513 C1 3K3 35 3K3 H1 H1 H 0 1 N N N 19.661 -14.393 -19.669 -7.990 0.132 1.504 H1 3K3 36 3K3 H2 H2 H 0 1 N N N 22.072 -14.929 -19.585 -6.420 -1.711 1.928 H2 3K3 37 3K3 H3 H3 H 0 1 N N N 20.339 -10.981 -17.178 -5.278 1.882 -1.269 H3 3K3 38 3K3 H4 H4 H 0 1 N N N 24.528 -13.984 -18.464 -3.783 -2.637 1.103 H4 3K3 39 3K3 H6 H6 H 0 1 N N N 25.784 -10.907 -16.361 -1.378 -2.105 -1.646 H6 3K3 40 3K3 H7 H7 H 0 1 N N N 26.455 -13.115 -18.553 -1.745 -3.353 1.207 H7 3K3 41 3K3 H8 H8 H 0 1 N N N 25.858 -14.089 -16.142 -0.585 -0.915 1.150 H8 3K3 42 3K3 H9 H9 H 0 1 N N N 30.250 -10.908 -16.153 2.392 -4.879 -0.921 H9 3K3 43 3K3 H10 H10 H 0 1 N N N 30.580 -11.192 -13.707 4.304 -3.396 -1.324 H10 3K3 44 3K3 H11 H11 H 0 1 N N N 26.856 -13.323 -13.435 1.938 -0.029 -0.181 H11 3K3 45 3K3 H12 H12 H 0 1 N N N 28.345 -9.929 -12.691 3.695 -1.222 1.539 H12 3K3 46 3K3 H13 H13 H 0 1 N N N 28.104 -8.050 -11.115 4.764 -0.082 3.435 H13 3K3 47 3K3 H14 H14 H 0 1 N N N 28.544 -9.888 -6.993 8.021 2.544 1.597 H14 3K3 48 3K3 H15 H15 H 0 1 N N N 28.370 -13.413 -8.966 7.226 0.507 -1.740 H15 3K3 49 3K3 H16 H16 H 0 1 N N N 29.884 -13.459 -9.932 5.563 0.941 -2.203 H16 3K3 50 3K3 H17 H17 H 0 1 N N N 30.083 -13.645 -7.355 5.840 3.213 -1.469 H17 3K3 51 3K3 H18 H18 H 0 1 N N N 31.163 -12.490 -8.206 7.280 2.823 -2.436 H18 3K3 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3K3 F C19 SING N N 1 3K3 C17 C16 DOUB Y N 2 3K3 C17 C18 SING Y N 3 3K3 C16 C15 SING Y N 4 3K3 C19 C18 SING N N 5 3K3 C19 F1 SING N N 6 3K3 C19 F2 SING N N 7 3K3 C18 C20 DOUB Y N 8 3K3 C15 N SING Y N 9 3K3 C15 C21 DOUB Y N 10 3K3 N C14 SING Y N 11 3K3 C20 C21 SING Y N 12 3K3 C21 N1 SING Y N 13 3K3 C9 O2 SING N N 14 3K3 C9 C13 SING N N 15 3K3 C9 C10 SING N N 16 3K3 O2 C8 SING N N 17 3K3 C14 N1 DOUB Y N 18 3K3 C14 C13 SING N N 19 3K3 C13 C10 SING N N 20 3K3 C10 C11 SING N N 21 3K3 C8 C7 DOUB Y N 22 3K3 C8 C11 SING Y N 23 3K3 C7 C6 SING Y N 24 3K3 C11 C12 DOUB Y N 25 3K3 C6 C5 DOUB Y N 26 3K3 C12 C5 SING Y N 27 3K3 C5 O1 SING N N 28 3K3 O1 C4 SING N N 29 3K3 C22 C4 DOUB Y N 30 3K3 C22 C23 SING Y N 31 3K3 C4 C3 SING Y N 32 3K3 C23 N2 DOUB Y N 33 3K3 C3 C2 SING N N 34 3K3 C3 C24 DOUB Y N 35 3K3 N2 C24 SING Y N 36 3K3 C2 C1 SING N N 37 3K3 C24 N3 SING N N 38 3K3 C1 C SING N N 39 3K3 N3 C SING N N 40 3K3 C O DOUB N N 41 3K3 C17 H1 SING N N 42 3K3 C16 H2 SING N N 43 3K3 C20 H3 SING N N 44 3K3 N H4 SING N N 45 3K3 C13 H6 SING N N 46 3K3 C9 H7 SING N N 47 3K3 C10 H8 SING N N 48 3K3 C7 H9 SING N N 49 3K3 C6 H10 SING N N 50 3K3 C12 H11 SING N N 51 3K3 C22 H12 SING N N 52 3K3 C23 H13 SING N N 53 3K3 N3 H14 SING N N 54 3K3 C2 H15 SING N N 55 3K3 C2 H16 SING N N 56 3K3 C1 H17 SING N N 57 3K3 C1 H18 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3K3 SMILES ACDLabs 12.01 "FC(F)(F)c1cc2nc(nc2cc1)C4C3c7c(OC34)ccc(Oc6ccnc5NC(=O)CCc56)c7" 3K3 InChI InChI 1.03 "InChI=1S/C25H17F3N4O3/c26-25(27,28)11-1-4-15-16(9-11)31-24(30-15)21-20-14-10-12(2-5-17(14)35-22(20)21)34-18-7-8-29-23-13(18)3-6-19(33)32-23/h1-2,4-5,7-10,20-22H,3,6H2,(H,30,31)(H,29,32,33)/t20-,21-,22-/m0/s1" 3K3 InChIKey InChI 1.03 NGFFVZQXSRKHBM-FKBYEOEOSA-N 3K3 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1ccc2[nH]c(nc2c1)[C@@H]3[C@H]4Oc5ccc(Oc6ccnc7NC(=O)CCc67)cc5[C@@H]34" 3K3 SMILES CACTVS 3.385 "FC(F)(F)c1ccc2[nH]c(nc2c1)[CH]3[CH]4Oc5ccc(Oc6ccnc7NC(=O)CCc67)cc5[CH]34" 3K3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc2c(cc1C(F)(F)F)nc([nH]2)[C@H]3[C@H]4[C@@H]3Oc5c4cc(cc5)Oc6ccnc7c6CCC(=O)N7" 3K3 SMILES "OpenEye OEToolkits" 1.7.6 "c1cc2c(cc1C(F)(F)F)nc([nH]2)C3C4C3Oc5c4cc(cc5)Oc6ccnc7c6CCC(=O)N7" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3K3 "SYSTEMATIC NAME" ACDLabs 12.01 "5-({(1R,1aS,6bR)-1-[5-(trifluoromethyl)-1H-benzimidazol-2-yl]-1a,6b-dihydro-1H-cyclopropa[b][1]benzofuran-5-yl}oxy)-3,4-dihydro-1,8-naphthyridin-2(1H)-one" 3K3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[[(1R,1aS,6bR)-1-[5-(trifluoromethyl)-1H-benzimidazol-2-yl]-1a,6b-dihydro-1H-cyclopropa[b][1]benzofuran-5-yl]oxy]-3,4-dihydro-1H-1,8-naphthyridin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3K3 "Create component" 2014-08-28 RCSB 3K3 "Initial release" 2016-02-24 RCSB #