data_3KV # _chem_comp.id 3KV _chem_comp.name "retinoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "trans Retinoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-09-08 _chem_comp.pdbx_modified_date 2016-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status OBS _chem_comp.pdbx_replaced_by REA _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 300.435 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3KV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4TNS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3KV C4 C1 C 0 1 N N N 14.173 -0.881 2.620 5.320 -1.963 -0.203 C4 3KV 1 3KV C5 C2 C 0 1 N N N 14.929 -2.196 2.718 4.000 -1.291 -0.445 C5 3KV 2 3KV C6 C3 C 0 1 N N N 14.614 -2.931 3.807 3.751 -0.030 -0.136 C6 3KV 3 3KV C7 C4 C 0 1 N N N 14.799 -4.419 3.690 2.457 0.483 -0.409 C7 3KV 4 3KV C8 C5 C 0 1 N N N 15.803 -4.853 2.877 1.364 -0.099 0.148 C8 3KV 5 3KV C10 C6 C 0 1 N N N 15.253 -6.628 1.588 -1.023 -0.261 0.336 C10 3KV 6 3KV C13 C7 C 0 1 N N N 16.210 -9.479 -0.344 -4.693 -0.001 0.155 C13 3KV 7 3KV C15 C8 C 0 1 N N N 16.563 -11.805 0.672 -7.077 -0.282 0.225 C15 3KV 8 3KV C17 C9 C 0 1 N N N 13.770 -2.853 6.385 4.086 1.707 1.593 C17 3KV 9 3KV C20 C10 C 0 1 N N N 16.351 -9.921 -1.768 -4.860 1.099 -0.861 C20 3KV 10 3KV O1 O1 O 0 1 N N N 16.983 -12.384 1.699 -8.171 -0.756 0.861 O1 3KV 11 3KV O2 O2 O 0 1 N N N 16.326 -12.452 -0.382 -7.203 0.406 -0.771 O2 3KV 12 3KV C14 C11 C 0 1 N N N 16.337 -10.333 0.720 -5.791 -0.586 0.715 C14 3KV 13 3KV C12 C12 C 0 1 N N N 16.033 -8.050 -0.071 -3.407 -0.424 0.526 C12 3KV 14 3KV C11 C13 C 0 1 N N N 15.401 -7.931 1.096 -2.308 0.162 -0.034 C11 3KV 15 3KV C9 C14 C 0 1 N N N 16.160 -6.234 2.502 0.075 0.324 -0.223 C9 3KV 16 3KV C19 C15 C 0 1 N N N 17.311 -7.099 3.053 -0.093 1.424 -1.240 C19 3KV 17 3KV C18 C16 C 0 1 N N N 15.761 -2.633 1.533 2.896 -2.099 -1.077 C18 3KV 18 3KV C3 C17 C 0 1 N N N 14.660 -0.098 3.819 6.409 -0.914 0.031 C3 3KV 19 3KV C2 C18 C 0 1 N N N 14.481 -0.749 5.198 5.911 0.079 1.088 C2 3KV 20 3KV C1 C19 C 0 1 N N N 13.909 -2.207 5.003 4.760 0.890 0.489 C1 3KV 21 3KV C16 C20 C 0 1 N N N 12.410 -2.277 4.672 5.310 1.839 -0.577 C16 3KV 22 3KV H1 H1 H 0 1 N N N 14.417 -0.357 1.684 5.243 -2.606 0.674 H1 3KV 23 3KV H2 H2 H 0 1 N N N 13.087 -1.048 2.675 5.582 -2.568 -1.071 H2 3KV 24 3KV H5 H5 H 0 1 N N N 14.166 -5.111 4.225 2.342 1.337 -1.060 H5 3KV 25 3KV H6 H6 H 0 1 N N N 16.422 -4.079 2.448 1.484 -0.888 0.876 H6 3KV 26 3KV H7 H7 H 0 1 N N N 14.458 -5.978 1.254 -0.902 -1.049 1.064 H7 3KV 27 3KV H8 H8 H 0 1 N N N 13.244 -2.163 7.061 3.758 1.040 2.390 H8 3KV 28 3KV H9 H9 H 0 1 N N N 13.197 -3.788 6.297 4.795 2.431 1.994 H9 3KV 29 3KV H10 H10 H 0 1 N N N 14.769 -3.072 6.790 3.224 2.232 1.182 H10 3KV 30 3KV H11 H11 H 0 1 N N N 16.475 -11.013 -1.803 -5.011 0.662 -1.848 H11 3KV 31 3KV H12 H12 H 0 1 N N N 15.450 -9.636 -2.331 -5.725 1.708 -0.598 H12 3KV 32 3KV H13 H13 H 0 1 N N N 17.232 -9.438 -2.216 -3.967 1.723 -0.872 H13 3KV 33 3KV H14 H14 H 0 1 N N N 17.072 -13.314 1.525 -9.007 -0.495 0.452 H14 3KV 34 3KV H15 H15 H 0 1 N N N 16.265 -9.890 1.702 -5.674 -1.281 1.532 H15 3KV 35 3KV H16 H16 H 0 1 N N N 16.357 -7.237 -0.704 -3.287 -1.212 1.254 H16 3KV 36 3KV H18 H18 H 0 1 N N N 15.025 -8.790 1.632 -2.428 0.950 -0.763 H18 3KV 37 3KV H20 H20 H 0 1 N N N 17.890 -6.517 3.784 -0.121 2.388 -0.731 H20 3KV 38 3KV H21 H21 H 0 1 N N N 16.896 -7.993 3.542 0.745 1.406 -1.937 H21 3KV 39 3KV H22 H22 H 0 1 N N N 17.968 -7.405 2.226 -1.023 1.275 -1.787 H22 3KV 40 3KV H23 H23 H 0 1 N N N 16.242 -3.596 1.757 3.280 -3.080 -1.360 H23 3KV 41 3KV H24 H24 H 0 1 N N N 15.113 -2.744 0.651 2.080 -2.220 -0.364 H24 3KV 42 3KV H25 H25 H 0 1 N N N 16.533 -1.877 1.328 2.530 -1.583 -1.964 H25 3KV 43 3KV H26 H26 H 0 1 N N N 15.735 0.090 3.678 7.317 -1.402 0.387 H26 3KV 44 3KV H27 H27 H 0 1 N N N 14.119 0.860 3.832 6.615 -0.385 -0.900 H27 3KV 45 3KV H28 H28 H 0 1 N N N 15.452 -0.799 5.712 5.558 -0.465 1.964 H28 3KV 46 3KV H29 H29 H 0 1 N N N 13.778 -0.154 5.799 6.723 0.747 1.375 H29 3KV 47 3KV H30 H30 H 0 1 N N N 11.834 -1.786 5.470 4.493 2.426 -0.997 H30 3KV 48 3KV H31 H31 H 0 1 N N N 12.221 -1.766 3.716 6.042 2.507 -0.125 H31 3KV 49 3KV H32 H32 H 0 1 N N N 12.101 -3.330 4.592 5.785 1.260 -1.369 H32 3KV 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3KV C20 C13 SING N N 1 3KV O2 C15 DOUB N N 2 3KV C13 C12 SING N N 3 3KV C13 C14 DOUB N E 4 3KV C12 C11 DOUB N E 5 3KV C15 C14 SING N N 6 3KV C15 O1 SING N N 7 3KV C11 C10 SING N N 8 3KV C18 C5 SING N N 9 3KV C10 C9 DOUB N E 10 3KV C9 C8 SING N N 11 3KV C9 C19 SING N N 12 3KV C4 C5 SING N N 13 3KV C4 C3 SING N N 14 3KV C5 C6 DOUB N N 15 3KV C8 C7 DOUB N E 16 3KV C7 C6 SING N N 17 3KV C6 C1 SING N N 18 3KV C3 C2 SING N N 19 3KV C16 C1 SING N N 20 3KV C1 C2 SING N N 21 3KV C1 C17 SING N N 22 3KV C4 H1 SING N N 23 3KV C4 H2 SING N N 24 3KV C7 H5 SING N N 25 3KV C8 H6 SING N N 26 3KV C10 H7 SING N N 27 3KV C17 H8 SING N N 28 3KV C17 H9 SING N N 29 3KV C17 H10 SING N N 30 3KV C20 H11 SING N N 31 3KV C20 H12 SING N N 32 3KV C20 H13 SING N N 33 3KV O1 H14 SING N N 34 3KV C14 H15 SING N N 35 3KV C12 H16 SING N N 36 3KV C11 H18 SING N N 37 3KV C19 H20 SING N N 38 3KV C19 H21 SING N N 39 3KV C19 H22 SING N N 40 3KV C18 H23 SING N N 41 3KV C18 H24 SING N N 42 3KV C18 H25 SING N N 43 3KV C3 H26 SING N N 44 3KV C3 H27 SING N N 45 3KV C2 H28 SING N N 46 3KV C2 H29 SING N N 47 3KV C16 H30 SING N N 48 3KV C16 H31 SING N N 49 3KV C16 H32 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3KV SMILES ACDLabs 12.01 "C1C(=C(C(C)(CC1)C)[C@H]=[C@H]C(=[C@H]\C=C\C(=C\C(O)=O)C)C)C" 3KV InChI InChI 1.03 "InChI=1S/C20H28O2/c1-15(8-6-9-16(2)14-19(21)22)11-12-18-17(3)10-7-13-20(18,4)5/h6,8-9,11-12,14H,7,10,13H2,1-5H3,(H,21,22)/b9-6+,12-11+,15-8+,16-14+" 3KV InChIKey InChI 1.03 SHGAZHPCJJPHSC-YCNIQYBTSA-N 3KV SMILES_CANONICAL CACTVS 3.385 "CC1=C(/C=C/C(C)=C/C=C/C(C)=C/C(O)=O)C(C)(C)CCC1" 3KV SMILES CACTVS 3.385 "CC1=C(C=CC(C)=CC=CC(C)=CC(O)=O)C(C)(C)CCC1" 3KV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C(=O)O)/C)/C" 3KV SMILES "OpenEye OEToolkits" 1.7.6 "CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC(=O)O)C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3KV "SYSTEMATIC NAME" ACDLabs 12.01 "retinoic acid" 3KV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3KV "Create component" 2014-09-08 RCSB 3KV "Initial release" 2015-04-08 RCSB 3KV "Other modification" 2016-10-18 RCSB #