data_3RB # _chem_comp.id 3RB _chem_comp.name "(2E,4E,6Z,8E)-3,7-dimethyl-8-(6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ylidene)octa-2,4,6-trienoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-10-13 _chem_comp.pdbx_modified_date 2015-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3RB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4RFW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3RB C4 C4 C 0 1 Y N N 66.729 47.610 34.356 -3.438 2.672 0.019 C4 3RB 1 3RB C5 C5 C 0 1 Y N N 66.642 47.464 32.977 -2.719 1.533 0.305 C5 3RB 2 3RB C6 C6 C 0 1 Y N N 65.432 47.610 32.325 -2.960 0.357 -0.405 C6 3RB 3 3RB C7 C7 C 0 1 N N N 65.223 47.409 30.889 -2.231 -0.869 -0.041 C7 3RB 4 3RB C8 C8 C 0 1 N N N 64.563 48.385 30.163 -1.349 -1.442 -0.896 C8 3RB 5 3RB C10 C10 C 0 1 N N N 63.079 47.924 28.216 0.656 -2.618 -0.300 C10 3RB 6 3RB C13 C13 C 0 1 N N N 59.817 46.572 29.713 3.447 -0.213 -0.315 C13 3RB 7 3RB C15 C15 C 0 1 N N N 57.319 46.563 29.925 5.486 1.024 -0.030 C15 3RB 8 3RB C20 C20 C 0 1 N N N 60.005 46.282 31.204 2.738 1.059 -0.704 C20 3RB 9 3RB C21 C21 C 0 1 N N N 67.938 45.838 31.481 -2.084 0.716 2.560 C21 3RB 10 3RB "C2'" "C2'" C 0 1 N N N 65.724 46.152 30.184 -2.503 -1.467 1.325 "C2'" 3RB 11 3RB "C1'" "C1'" C 0 1 N N N 67.250 46.046 30.127 -1.701 -0.745 2.378 "C1'" 3RB 12 3RB C18 C18 C 0 1 N N N 67.984 47.106 32.332 -1.640 1.562 1.372 C18 3RB 13 3RB C3 C3 C 0 1 Y N N 65.580 47.932 35.072 -4.385 2.652 -0.992 C3 3RB 14 3RB C2 C2 C 0 1 Y N N 64.360 48.087 34.413 -4.611 1.496 -1.720 C2 3RB 15 3RB C1 C1 C 0 1 Y N N 64.277 47.916 33.042 -3.909 0.344 -1.432 C1 3RB 16 3RB C9 C9 C 0 1 N N N 64.339 48.228 28.722 -0.687 -2.631 -0.532 C9 3RB 17 3RB C19 C19 C 0 1 N N N 65.434 48.744 27.791 -1.463 -3.915 -0.399 C19 3RB 18 3RB C11 C11 C 0 1 N N N 61.921 47.741 29.098 1.379 -1.422 -0.424 C11 3RB 19 3RB C12 C12 C 0 1 N N N 60.981 46.749 28.836 2.724 -1.410 -0.192 C12 3RB 20 3RB C14 C14 C 0 1 N N N 58.549 46.707 29.146 4.790 -0.201 -0.083 C14 3RB 21 3RB O1 O1 O 0 1 N N N 57.137 45.492 30.548 6.832 1.033 0.072 O1 3RB 22 3RB O2 O2 O 0 1 N N N 56.510 47.519 29.915 4.872 2.075 -0.076 O2 3RB 23 3RB H1 H1 H 0 1 N N N 67.673 47.476 34.864 -3.267 3.576 0.584 H1 3RB 24 3RB H2 H2 H 0 1 N N N 64.208 49.274 30.664 -1.154 -0.987 -1.856 H2 3RB 25 3RB H3 H3 H 0 1 N N N 62.950 47.820 27.149 1.164 -3.530 -0.021 H3 3RB 26 3RB H4 H4 H 0 1 N N N 59.021 46.183 31.686 2.475 1.617 0.194 H4 3RB 27 3RB H5 H5 H 0 1 N N N 60.569 45.346 31.327 3.395 1.664 -1.329 H5 3RB 28 3RB H6 H6 H 0 1 N N N 60.560 47.109 31.671 1.832 0.814 -1.259 H6 3RB 29 3RB H7 H7 H 0 1 N N N 67.390 45.063 32.037 -3.167 0.790 2.665 H7 3RB 30 3RB H8 H8 H 0 1 N N N 68.969 45.500 31.301 -1.611 1.097 3.465 H8 3RB 31 3RB H9 H9 H 0 1 N N N 65.337 46.154 29.154 -3.565 -1.375 1.554 H9 3RB 32 3RB H10 H10 H 0 1 N N N 65.335 45.274 30.721 -2.225 -2.520 1.320 H10 3RB 33 3RB H11 H11 H 0 1 N N N 67.509 45.196 29.479 -0.646 -0.795 2.105 H11 3RB 34 3RB H12 H12 H 0 1 N N N 67.640 46.975 29.686 -1.834 -1.260 3.329 H12 3RB 35 3RB H13 H13 H 0 1 N N N 68.726 46.961 33.131 -0.714 1.157 0.963 H13 3RB 36 3RB H14 H14 H 0 1 N N N 68.295 47.944 31.690 -1.477 2.589 1.697 H14 3RB 37 3RB H15 H15 H 0 1 N N N 65.633 48.063 36.143 -4.952 3.544 -1.214 H15 3RB 38 3RB H16 H16 H 0 1 N N N 63.475 48.342 34.976 -5.346 1.495 -2.512 H16 3RB 39 3RB H17 H17 H 0 1 N N N 63.329 48.018 32.534 -4.088 -0.559 -1.997 H17 3RB 40 3RB H18 H18 H 0 1 N N N 66.352 48.927 28.369 -1.818 -4.021 0.626 H18 3RB 41 3RB H19 H19 H 0 1 N N N 65.635 47.995 27.011 -2.315 -3.897 -1.079 H19 3RB 42 3RB H20 H20 H 0 1 N N N 65.104 49.682 27.321 -0.817 -4.757 -0.649 H20 3RB 43 3RB H21 H21 H 0 1 N N N 61.797 48.382 29.958 0.871 -0.510 -0.703 H21 3RB 44 3RB H22 H22 H 0 1 N N N 61.109 46.103 27.980 3.232 -2.321 0.087 H22 3RB 45 3RB H23 H23 H 0 1 N N N 58.473 46.926 28.091 5.322 -1.130 0.060 H23 3RB 46 3RB H24 H24 H 0 1 N N N 56.302 45.526 31.001 7.219 1.918 0.101 H24 3RB 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3RB C19 C9 SING N N 1 3RB C10 C9 DOUB N Z 2 3RB C10 C11 SING N N 3 3RB C9 C8 SING N N 4 3RB C12 C11 DOUB N E 5 3RB C12 C13 SING N N 6 3RB C14 C13 DOUB N E 7 3RB C14 C15 SING N N 8 3RB C13 C20 SING N N 9 3RB O2 C15 DOUB N N 10 3RB C15 O1 SING N N 11 3RB "C1'" "C2'" SING N N 12 3RB "C1'" C21 SING N N 13 3RB C8 C7 DOUB N E 14 3RB "C2'" C7 SING N N 15 3RB C7 C6 SING N N 16 3RB C21 C18 SING N N 17 3RB C6 C5 DOUB Y N 18 3RB C6 C1 SING Y N 19 3RB C18 C5 SING N N 20 3RB C5 C4 SING Y N 21 3RB C1 C2 DOUB Y N 22 3RB C4 C3 DOUB Y N 23 3RB C2 C3 SING Y N 24 3RB C4 H1 SING N N 25 3RB C8 H2 SING N N 26 3RB C10 H3 SING N N 27 3RB C20 H4 SING N N 28 3RB C20 H5 SING N N 29 3RB C20 H6 SING N N 30 3RB C21 H7 SING N N 31 3RB C21 H8 SING N N 32 3RB "C2'" H9 SING N N 33 3RB "C2'" H10 SING N N 34 3RB "C1'" H11 SING N N 35 3RB "C1'" H12 SING N N 36 3RB C18 H13 SING N N 37 3RB C18 H14 SING N N 38 3RB C3 H15 SING N N 39 3RB C2 H16 SING N N 40 3RB C1 H17 SING N N 41 3RB C19 H18 SING N N 42 3RB C19 H19 SING N N 43 3RB C19 H20 SING N N 44 3RB C11 H21 SING N N 45 3RB C12 H22 SING N N 46 3RB C14 H23 SING N N 47 3RB O1 H24 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3RB SMILES ACDLabs 12.01 "O=C(O)\C=C(\C=C\C=C(/C=C2/c1c(cccc1)CCCC2)C)C" 3RB InChI InChI 1.03 "InChI=1S/C21H24O2/c1-16(8-7-9-17(2)15-21(22)23)14-19-12-4-3-10-18-11-5-6-13-20(18)19/h5-9,11,13-15H,3-4,10,12H2,1-2H3,(H,22,23)/b9-7+,16-8-,17-15+,19-14+" 3RB InChIKey InChI 1.03 GVIXTTYIECEGAU-IVVJPBLYSA-N 3RB SMILES_CANONICAL CACTVS 3.385 "CC(/C=C/C=C(C)\C=C\1CCCCc2ccccc\12)=C\C(O)=O" 3RB SMILES CACTVS 3.385 "CC(C=CC=C(C)C=C1CCCCc2ccccc12)=CC(O)=O" 3RB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C/C(=C\C(=O)O)/C=C/C=C(/C)\C=C\1/CCCCc2c1cccc2" 3RB SMILES "OpenEye OEToolkits" 1.7.6 "CC(=CC(=O)O)C=CC=C(C)C=C1CCCCc2c1cccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3RB "SYSTEMATIC NAME" ACDLabs 12.01 "(2E,4E,6Z,8E)-3,7-dimethyl-8-(6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ylidene)octa-2,4,6-trienoic acid" 3RB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2E,4E,6Z,8E)-3,7-dimethyl-8-(6,7,8,9-tetrahydrobenzo[7]annulen-5-ylidene)octa-2,4,6-trienoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3RB "Create component" 2014-10-13 RCSB 3RB "Initial release" 2015-09-16 RCSB #