data_3TT # _chem_comp.id 3TT _chem_comp.name "[[[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H15 N4 O11 P3 S" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-06 _chem_comp.pdbx_modified_date 2014-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.211 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 3TT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VCV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 3TT O3G O3G O 0 1 N N N -21.328 10.918 -21.053 -4.978 3.131 -1.588 O3G 3TT 1 3TT PG PG P 0 1 N N N -22.626 11.053 -22.010 -4.866 1.857 -0.609 PG 3TT 2 3TT O1G O1G O 0 1 N N N -22.768 9.589 -22.680 -4.981 2.345 0.921 O1G 3TT 3 3TT O2G O2G O 0 1 N N N -22.446 12.097 -23.050 -5.962 0.908 -0.908 O2G 3TT 4 3TT N3B N3B N 0 1 N N N -23.999 11.266 -21.133 -3.384 1.096 -0.845 N3B 3TT 5 3TT PB PB P 0 1 N N N -23.778 11.830 -19.640 -3.227 -0.244 0.161 PB 3TT 6 3TT O2B O2B O 0 1 N N N -22.311 11.374 -19.199 -3.327 0.225 1.698 O2B 3TT 7 3TT O1B O1B O 0 1 N N N -23.852 13.296 -19.493 -4.309 -1.210 -0.132 O1B 3TT 8 3TT O3A O3A O 0 1 N N N -24.837 11.078 -18.698 -1.799 -0.942 -0.095 O3A 3TT 9 3TT PA PA P 0 1 N N N -25.331 9.575 -18.992 -1.056 -2.228 0.527 PA 3TT 10 3TT O1A O1A O 0 1 N N N -24.006 8.671 -19.145 -1.627 -3.565 -0.163 O1A 3TT 11 3TT O2A O2A O 0 1 N N N -26.206 9.476 -20.183 -1.302 -2.282 1.986 O2A 3TT 12 3TT "O5'" "O5'" O 0 1 N N N -26.066 9.068 -17.649 0.527 -2.117 0.254 "O5'" 3TT 13 3TT "C5'" "C5'" C 0 1 N N N -25.685 9.608 -16.381 1.474 -3.053 0.773 "C5'" 3TT 14 3TT "C4'" "C4'" C 0 1 N N R -26.841 9.393 -15.404 2.882 -2.655 0.326 "C4'" 3TT 15 3TT "O4'" "O4'" O 0 1 N N N -27.917 10.204 -15.891 3.179 -1.307 0.739 "O4'" 3TT 16 3TT "S3'" "S3'" S 0 1 N N N -26.416 10.127 -13.845 2.983 -2.604 -1.505 "S3'" 3TT 17 3TT "C2'" "C2'" C 0 1 N N N -27.892 11.087 -13.619 3.516 -0.846 -1.607 "C2'" 3TT 18 3TT "C1'" "C1'" C 0 1 N N S -28.734 10.677 -14.812 4.072 -0.645 -0.168 "C1'" 3TT 19 3TT N1 N1 N 0 1 N N N -29.452 11.862 -15.326 4.129 0.785 0.147 N1 3TT 20 3TT C2 C2 C 0 1 N N N -30.734 12.058 -14.960 4.888 1.605 -0.602 C2 3TT 21 3TT O2 O2 O 0 1 N N N -31.311 11.218 -14.275 5.522 1.148 -1.538 O2 3TT 22 3TT N3 N3 N 0 1 N N N -31.423 13.206 -15.368 4.958 2.909 -0.339 N3 3TT 23 3TT C4 C4 C 0 1 N N N -30.761 14.157 -16.178 4.279 3.433 0.673 C4 3TT 24 3TT N4 N4 N 0 1 N N N -31.443 15.238 -16.564 4.359 4.781 0.935 N4 3TT 25 3TT C5 C5 C 0 1 N N N -29.429 13.967 -16.540 3.474 2.601 1.478 C5 3TT 26 3TT C6 C6 C 0 1 N N N -28.772 12.815 -16.099 3.409 1.278 1.194 C6 3TT 27 3TT H1 H1 H 0 1 N N N -20.665 11.541 -21.328 -5.808 3.618 -1.506 H1 3TT 28 3TT H2 H2 H 0 1 N N N -22.710 9.666 -23.625 -4.294 2.970 1.187 H2 3TT 29 3TT H3 H3 H 0 1 N N N -24.583 11.912 -21.625 -3.260 0.838 -1.813 H3 3TT 30 3TT H4 H4 H 0 1 N N N -21.807 12.136 -18.940 -2.647 0.861 1.961 H4 3TT 31 3TT H5 H5 H 0 1 N N N -24.020 8.227 -19.985 -1.500 -3.598 -1.122 H5 3TT 32 3TT H6 H6 H 0 1 N N N -24.785 9.094 -16.012 1.425 -3.053 1.862 H6 3TT 33 3TT H7 H7 H 0 1 N N N -25.477 10.684 -16.481 1.242 -4.050 0.399 H7 3TT 34 3TT H8 H8 H 0 1 N N N -27.093 8.332 -15.259 3.619 -3.349 0.729 H8 3TT 35 3TT H9 H9 H 0 1 N N N -27.672 12.165 -13.639 4.297 -0.713 -2.355 H9 3TT 36 3TT H10 H10 H 0 1 N N N -28.392 10.832 -12.673 2.670 -0.187 -1.801 H10 3TT 37 3TT H11 H11 H 0 1 N N N -29.455 9.905 -14.504 5.067 -1.081 -0.091 H11 3TT 38 3TT H12 H12 H 0 1 N N N -32.394 15.357 -16.280 4.913 5.351 0.380 H12 3TT 39 3TT H13 H13 H 0 1 N N N -31.002 15.929 -17.137 3.861 5.161 1.676 H13 3TT 40 3TT H14 H14 H 0 1 N N N -28.915 14.695 -17.149 2.916 3.012 2.305 H14 3TT 41 3TT H15 H15 H 0 1 N N N -27.735 12.657 -16.355 2.799 0.620 1.795 H15 3TT 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3TT O2G PG DOUB N N 1 3TT O1G PG SING N N 2 3TT PG N3B SING N N 3 3TT PG O3G SING N N 4 3TT N3B PB SING N N 5 3TT O2A PA DOUB N N 6 3TT PB O1B DOUB N N 7 3TT PB O2B SING N N 8 3TT PB O3A SING N N 9 3TT O1A PA SING N N 10 3TT PA O3A SING N N 11 3TT PA "O5'" SING N N 12 3TT "O5'" "C5'" SING N N 13 3TT N4 C4 SING N N 14 3TT C5 C4 SING N N 15 3TT C5 C6 DOUB N N 16 3TT "C5'" "C4'" SING N N 17 3TT C4 N3 DOUB N N 18 3TT C6 N1 SING N N 19 3TT "O4'" "C4'" SING N N 20 3TT "O4'" "C1'" SING N N 21 3TT "C4'" "S3'" SING N N 22 3TT N3 C2 SING N N 23 3TT N1 C2 SING N N 24 3TT N1 "C1'" SING N N 25 3TT C2 O2 DOUB N N 26 3TT "C1'" "C2'" SING N N 27 3TT "S3'" "C2'" SING N N 28 3TT O3G H1 SING N N 29 3TT O1G H2 SING N N 30 3TT N3B H3 SING N N 31 3TT O2B H4 SING N N 32 3TT O1A H5 SING N N 33 3TT "C5'" H6 SING N N 34 3TT "C5'" H7 SING N N 35 3TT "C4'" H8 SING N N 36 3TT "C2'" H9 SING N N 37 3TT "C2'" H10 SING N N 38 3TT "C1'" H11 SING N N 39 3TT N4 H12 SING N N 40 3TT N4 H13 SING N N 41 3TT C5 H14 SING N N 42 3TT C6 H15 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 3TT InChI InChI 1.03 "InChI=1S/C8H15N4O11P3S/c9-5-1-2-12(8(13)10-5)6-4-27-7(22-6)3-21-26(19,20)23-25(17,18)11-24(14,15)16/h1-2,6-7H,3-4H2,(H,19,20)(H2,9,10,13)(H4,11,14,15,16,17,18)/t6-,7+/m0/s1" 3TT InChIKey InChI 1.03 KGYPGPIERPVYLF-NKWVEPMBSA-N 3TT SMILES_CANONICAL CACTVS 3.370 "NC1=NC(=O)N(C=C1)[C@@H]2CS[C@H](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2" 3TT SMILES CACTVS 3.370 "NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2" 3TT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H](O[C@H](S1)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)N2C=CC(=NC2=O)N" 3TT SMILES "OpenEye OEToolkits" 1.7.6 "C1C(OC(S1)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)N2C=CC(=NC2=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 3TT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 3TT "Create component" 2012-01-06 RCSB 3TT "Initial release" 2014-08-27 RCSB #