data_46D # _chem_comp.id 46D _chem_comp.name "(4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID)" _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C15 H22 O14" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-MANNOSE-(1->4)-BETA-D-GLUCURONIC ACID" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-04-11 _chem_comp.pdbx_modified_date 2021-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.327 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 46D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1X1J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 46D O6A O6A O 0 1 N N N 20.737 56.248 80.081 -8.916 -1.143 -3.173 O6A 46D 1 46D C6 C6 C 0 1 N N N 19.659 56.616 79.566 -8.381 -1.352 -4.401 C6 46D 2 46D O6B O6B O 0 1 N N N 18.778 55.831 79.154 -8.279 -0.492 -5.262 O6B 46D 3 46D C5 C5 C 0 1 N N S 19.417 58.120 79.424 -7.936 -2.771 -4.547 C5 46D 4 46D O5 O5 O 0 1 N N N 20.049 58.566 78.211 -8.153 -3.043 -5.925 O5 46D 5 46D C1 C1 C 0 1 N N R 19.948 59.990 78.043 -7.823 -4.385 -6.273 C1 46D 6 46D C2 C2 C 0 1 N N R 18.472 60.375 77.913 -6.337 -4.646 -6.028 C2 46D 7 46D O2 O2 O 0 1 N N N 18.364 61.796 77.788 -6.043 -6.020 -6.278 O2 46D 8 46D C3 C3 C 0 1 N N R 17.699 59.908 79.149 -5.944 -4.301 -4.591 C3 46D 9 46D O3 O3 O 0 1 N N N 16.306 60.146 78.933 -4.520 -4.297 -4.480 O3 46D 10 46D C4 C4 C 0 1 N N S 17.922 58.415 79.409 -6.464 -2.921 -4.185 C4 46D 11 46D OP1 OP1 O 0 1 N N N 17.358 58.040 80.677 -6.320 -2.765 -2.781 OP1 46D 12 46D CP1 CP1 C 0 1 N N S 16.101 57.359 80.531 -5.460 -1.674 -2.465 CP1 46D 13 46D OP5 OP5 O 0 1 N N N 15.062 58.292 80.187 -4.165 -1.867 -3.044 OP5 46D 14 46D CP5 CP5 C 0 1 N N R 13.800 57.631 79.994 -3.291 -0.771 -2.778 CP5 46D 15 46D CP6 CP6 C 0 1 N N N 12.718 58.617 79.586 -1.952 -0.988 -3.483 CP6 46D 16 46D OP6 OP6 O 0 1 N N N 11.470 57.922 79.423 -0.848 -0.602 -2.663 OP6 46D 17 46D CP7 CP7 C 0 1 N N S 11.040 57.201 80.586 -1.085 0.577 -1.896 CP7 46D 18 46D CP9 CP9 C 0 1 N N N 10.582 58.152 81.696 0.057 0.587 -0.928 CP9 46D 19 46D OP7 OP7 O 0 1 N N N 10.631 57.722 82.868 -0.054 0.556 0.288 OP7 46D 20 46D OP8 OP8 O 0 1 N N N 10.191 59.288 81.349 1.241 0.637 -1.586 OP8 46D 21 46D CP8 CP8 C 0 1 N N N 9.847 56.335 80.177 -1.052 1.838 -2.748 CP8 46D 22 46D OP4 OP4 O 0 1 N N N 12.073 56.323 81.055 -2.254 0.572 -1.074 OP4 46D 23 46D CP4 CP4 C 0 1 N N S 13.326 56.988 81.287 -3.062 -0.588 -1.279 CP4 46D 24 46D CP3 CP3 C 0 1 N N R 14.385 55.977 81.731 -4.401 -0.420 -0.562 CP3 46D 25 46D OP3 OP3 O 0 1 N N N 14.015 55.442 83.005 -4.184 -0.410 0.845 OP3 46D 26 46D CP2 CP2 C 0 1 N N S 15.755 56.651 81.845 -5.352 -1.560 -0.941 CP2 46D 27 46D OP2 OP2 O 0 1 N N N 15.713 57.614 82.901 -4.838 -2.798 -0.438 OP2 46D 28 46D O1 O1 O 0 1 N Y N ? ? ? -8.085 -4.604 -7.658 O1 46D 29 46D H6A H6A H 0 1 N N N 21.406 56.844 80.394 -9.213 -0.215 -3.056 H6A 46D 30 46D H5 H5 H 0 1 N N N 19.854 58.667 80.291 -8.588 -3.394 -3.924 H5 46D 31 46D H1 H1 H 0 1 N N N 20.595 60.782 78.484 -8.446 -5.087 -5.705 H1 46D 32 46D H2 H2 H 0 1 N N N 18.041 59.884 77.009 -5.728 -4.064 -6.731 H2 46D 33 46D HO2 HO2 H 0 1 N N N 17.448 62.034 77.707 -6.633 -6.300 -6.994 HO2 46D 34 46D H3 H3 H 0 1 N N N 18.063 60.474 80.037 -6.307 -5.065 -3.892 H3 46D 35 46D HO3 HO3 H 0 1 N N N 15.826 59.856 79.700 -4.198 -3.643 -5.118 HO3 46D 36 46D H4 H4 H 0 1 N N N 17.425 57.831 78.599 -5.860 -2.140 -4.666 H4 46D 37 46D HP1 HP1 H 0 1 N N N 16.184 56.607 79.711 -5.912 -0.772 -2.892 HP1 46D 38 46D HP5 HP5 H 0 1 N N N 13.962 56.868 79.197 -3.737 0.141 -3.200 HP5 46D 39 46D HP61 1HP6 H 0 0 N N N 12.634 59.469 80.299 -1.809 -2.039 -3.754 HP61 46D 40 46D HP62 2HP6 H 0 0 N N N 12.998 59.197 78.676 -1.915 -0.416 -4.417 HP62 46D 41 46D HP8 HP8 H 0 1 N N N 9.906 59.877 82.037 2.003 0.646 -0.968 HP8 46D 42 46D HP81 1HP8 H 0 0 N N N 9.512 55.774 81.081 -0.993 2.728 -2.115 HP81 46D 43 46D HP82 2HP8 H 0 0 N N N 9.026 56.922 79.702 -0.184 1.830 -3.414 HP82 46D 44 46D HP83 3HP8 H 0 0 N N N 10.070 55.669 79.311 -1.955 1.911 -3.362 HP83 46D 45 46D HP4 HP4 H 0 1 N N N 13.180 57.757 82.080 -2.535 -1.451 -0.849 HP4 46D 46 46D HP3 HP3 H 0 1 N N N 14.447 55.161 80.973 -4.847 0.547 -0.823 HP3 46D 47 46D H6 H6 H 0 1 N N N 14.672 54.814 83.280 -4.624 0.384 1.187 H6 46D 48 46D HP2 HP2 H 0 1 N N N 16.530 55.879 82.059 -6.335 -1.425 -0.479 HP2 46D 49 46D H7 H7 H 0 1 N N N 15.498 57.175 83.715 -4.474 -2.603 0.437 H7 46D 50 46D HO1 HO1 H 0 1 N N N -0.066 0.941 -0.111 -7.306 -4.284 -8.139 HO1 46D 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 46D O6A C6 SING N N 1 46D O6A H6A SING N N 2 46D C6 O6B DOUB N N 3 46D C6 C5 SING N N 4 46D C5 O5 SING N N 5 46D C5 C4 SING N N 6 46D C5 H5 SING N N 7 46D O5 C1 SING N N 8 46D C1 C2 SING N N 9 46D C1 O1 SING N N 10 46D C1 H1 SING N N 11 46D C2 O2 SING N N 12 46D C2 C3 SING N N 13 46D C2 H2 SING N N 14 46D O2 HO2 SING N N 15 46D C3 O3 SING N N 16 46D C3 C4 SING N N 17 46D C3 H3 SING N N 18 46D O3 HO3 SING N N 19 46D C4 OP1 SING N N 20 46D C4 H4 SING N N 21 46D OP1 CP1 SING N N 22 46D CP1 OP5 SING N N 23 46D CP1 CP2 SING N N 24 46D CP1 HP1 SING N N 25 46D OP5 CP5 SING N N 26 46D CP5 CP6 SING N N 27 46D CP5 CP4 SING N N 28 46D CP5 HP5 SING N N 29 46D CP6 OP6 SING N N 30 46D CP6 HP61 SING N N 31 46D CP6 HP62 SING N N 32 46D OP6 CP7 SING N N 33 46D CP7 CP9 SING N N 34 46D CP7 CP8 SING N N 35 46D CP7 OP4 SING N N 36 46D CP9 OP7 DOUB N N 37 46D CP9 OP8 SING N N 38 46D OP8 HP8 SING N N 39 46D CP8 HP81 SING N N 40 46D CP8 HP82 SING N N 41 46D CP8 HP83 SING N N 42 46D OP4 CP4 SING N N 43 46D CP4 CP3 SING N N 44 46D CP4 HP4 SING N N 45 46D CP3 OP3 SING N N 46 46D CP3 CP2 SING N N 47 46D CP3 HP3 SING N N 48 46D OP3 H6 SING N N 49 46D CP2 OP2 SING N N 50 46D CP2 HP2 SING N N 51 46D OP2 H7 SING N N 52 46D O1 HO1 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 46D SMILES ACDLabs 10.04 "O=C(O)C3OC(O)C(O)C(O)C3OC1OC2COC(OC2C(O)C1O)(C(=O)O)C" 46D SMILES_CANONICAL CACTVS 3.341 "C[C@@]1(OC[C@H]2O[C@@H](O[C@H]3[C@H](O)[C@@H](O)[C@H](O)O[C@@H]3C(O)=O)[C@@H](O)[C@@H](O)[C@@H]2O1)C(O)=O" 46D SMILES CACTVS 3.341 "C[C]1(OC[CH]2O[CH](O[CH]3[CH](O)[CH](O)[CH](O)O[CH]3C(O)=O)[CH](O)[CH](O)[CH]2O1)C(O)=O" 46D SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@]1(OC[C@@H]2[C@@H](O1)[C@@H]([C@@H]([C@@H](O2)O[C@H]3[C@@H]([C@H]([C@@H](O[C@@H]3C(=O)O)O)O)O)O)O)C(=O)O" 46D SMILES "OpenEye OEToolkits" 1.5.0 "CC1(OCC2C(O1)C(C(C(O2)OC3C(C(C(OC3C(=O)O)O)O)O)O)O)C(=O)O" 46D InChI InChI 1.03 "InChI=1S/C15H22O14/c1-15(14(23)24)25-2-3-8(29-15)5(17)7(19)13(26-3)28-9-4(16)6(18)12(22)27-10(9)11(20)21/h3-10,12-13,16-19,22H,2H2,1H3,(H,20,21)(H,23,24)/t3-,4-,5-,6-,7+,8-,9+,10+,12?,13+,15+/m1/s1" 46D InChIKey InChI 1.03 GZJXZKGVHLWBOW-AISSFXTFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 46D "SYSTEMATIC NAME" ACDLabs 10.04 "4-O-{4,6-O-[(1S)-1-carboxyethylidene]-beta-D-mannopyranosyl}-beta-D-glucopyranuronic acid" 46D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,4aR,6S,7S,8R,8aS)-6-[(2S,3S,4R,5R,6R)-2-carboxy-4,5,6-trihydroxy-oxan-3-yl]oxy-7,8-dihydroxy-2-methyl-4,4a,6,7,8,8a-hexahydropyrano[5,6-d][1,3]dioxine-2-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 46D "Create component" 2005-04-11 RCSB 46D "Modify descriptor" 2011-06-04 RCSB 46D "Modify synonyms" 2021-03-03 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 46D _pdbx_chem_comp_synonyms.name "4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-MANNOSE-(1->4)-BETA-D-GLUCURONIC ACID" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##