data_4D7 # _chem_comp.id 4D7 _chem_comp.name "3-(1H-benzimidazol-2-yl)-N-[(2-methylfuran-3-yl)carbonyl]-D-alanine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H15 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(R)-3-(1H-Benzoimidazol-2-yl)-2-[(2-methyl-furan-3-carbonyl)-amino]-propionic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-10-22 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 313.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4D7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3KAG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4D7 C1 C1 C 0 1 Y N N -31.694 24.247 26.667 5.212 1.721 0.563 C1 4D7 1 4D7 C2 C2 C 0 1 Y N N -31.613 23.712 25.386 4.243 2.629 0.159 C2 4D7 2 4D7 C3 C3 C 0 1 Y N N -32.665 23.883 24.493 3.011 2.199 -0.247 C3 4D7 3 4D7 C4 C4 C 0 1 Y N N -32.826 24.952 27.057 4.945 0.368 0.561 C4 4D7 4 4D7 N5 N5 N 0 1 Y N N -35.051 25.734 26.259 3.120 -1.335 0.040 N5 4D7 5 4D7 C6 C6 C 0 1 Y N N -33.876 25.121 26.163 3.697 -0.086 0.157 C6 4D7 6 4D7 C7 C7 C 0 1 Y N N -33.796 24.589 24.886 2.718 0.833 -0.257 C7 4D7 7 4D7 N8 N8 N 0 1 Y N N -34.926 24.901 24.259 1.618 0.114 -0.596 N8 4D7 8 4D7 C9 C9 C 0 1 Y N N -35.691 25.599 25.097 1.855 -1.154 -0.426 C9 4D7 9 4D7 C10 C10 C 0 1 N N N -37.080 26.157 24.778 0.869 -2.261 -0.699 C10 4D7 10 4D7 C11 C11 C 0 1 N N R -36.979 27.519 24.088 -0.419 -2.001 0.084 C11 4D7 11 4D7 C12 C12 C 0 1 N N N -38.356 28.185 24.069 -1.358 -3.167 -0.091 C12 4D7 12 4D7 O13 O13 O 0 1 N N N -38.762 28.803 25.051 -0.983 -4.395 0.300 O13 4D7 13 4D7 O14 O14 O 0 1 N N N -39.070 28.109 23.070 -2.448 -2.996 -0.584 O14 4D7 14 4D7 N15 N15 N 0 1 N N N -36.502 27.336 22.710 -1.057 -0.781 -0.417 N15 4D7 15 4D7 C16 C16 C 0 1 N N N -35.257 27.633 22.349 -1.880 -0.073 0.382 C16 4D7 16 4D7 C17 C17 C 0 1 Y N N -34.933 27.381 20.875 -2.521 1.154 -0.122 C17 4D7 17 4D7 O18 O18 O 0 1 N N N -34.406 28.078 23.118 -2.092 -0.447 1.520 O18 4D7 18 4D7 C19 C19 C 0 1 Y N N -35.256 28.218 19.825 -3.373 1.978 0.555 C19 4D7 19 4D7 O20 O20 O 0 1 Y N N -34.799 27.645 18.681 -3.728 2.977 -0.258 O20 4D7 20 4D7 C21 C21 C 0 1 Y N N -34.201 26.461 19.065 -3.142 2.850 -1.458 C21 4D7 21 4D7 C22 C22 C 0 1 Y N N -34.292 26.320 20.393 -2.373 1.750 -1.458 C22 4D7 22 4D7 C23 C23 C 0 1 N N N -35.998 29.552 19.932 -3.835 1.791 1.977 C23 4D7 23 4D7 H1 H1 H 0 1 N N N -30.876 24.114 27.360 6.182 2.076 0.876 H1 4D7 24 4D7 H2 H2 H 0 1 N N N -30.733 23.164 25.085 4.466 3.685 0.165 H2 4D7 25 4D7 H3 H3 H 0 1 N N N -32.604 23.469 23.498 2.265 2.915 -0.559 H3 4D7 26 4D7 H4 H4 H 0 1 N N N -32.889 25.367 28.052 5.704 -0.335 0.872 H4 4D7 27 4D7 H10 H10 H 0 1 N N N -37.602 25.456 24.110 0.646 -2.294 -1.765 H10 4D7 28 4D7 H10A H10A H 0 0 N N N -37.643 26.272 25.716 1.297 -3.214 -0.388 H10A 4D7 29 4D7 H11 H11 H 0 1 N N N -36.272 28.157 24.638 -0.184 -1.879 1.141 H11 4D7 30 4D7 HO13 HO13 H 0 0 N N N -39.628 29.151 24.871 -1.619 -5.111 0.168 HO13 4D7 31 4D7 HN15 HN15 H 0 0 N N N -37.133 26.977 22.022 -0.888 -0.482 -1.325 HN15 4D7 32 4D7 H21 H21 H 0 1 N N N -33.731 25.756 18.395 -3.266 3.527 -2.291 H21 4D7 33 4D7 H22 H22 H 0 1 N N N -33.912 25.491 20.971 -1.773 1.376 -2.274 H22 4D7 34 4D7 H23 H23 H 0 1 N N N -36.111 29.991 18.930 -3.147 2.299 2.652 H23 4D7 35 4D7 H23A H23A H 0 0 N N N -36.992 29.384 20.373 -4.834 2.211 2.092 H23A 4D7 36 4D7 H23B H23B H 0 0 N N N -35.425 30.240 20.570 -3.858 0.728 2.215 H23B 4D7 37 4D7 HN5 HN5 H 0 1 N N N -35.396 26.215 27.065 3.542 -2.185 0.243 HN5 4D7 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4D7 C2 C1 DOUB Y N 1 4D7 C1 C4 SING Y N 2 4D7 C1 H1 SING N N 3 4D7 C3 C2 SING Y N 4 4D7 C2 H2 SING N N 5 4D7 C3 C7 DOUB Y N 6 4D7 C3 H3 SING N N 7 4D7 C6 C4 DOUB Y N 8 4D7 C4 H4 SING N N 9 4D7 C9 N5 SING Y N 10 4D7 C6 N5 SING Y N 11 4D7 C7 C6 SING Y N 12 4D7 N8 C7 SING Y N 13 4D7 N8 C9 DOUB Y N 14 4D7 C10 C9 SING N N 15 4D7 C11 C10 SING N N 16 4D7 C10 H10 SING N N 17 4D7 C10 H10A SING N N 18 4D7 N15 C11 SING N N 19 4D7 C12 C11 SING N N 20 4D7 C11 H11 SING N N 21 4D7 O14 C12 DOUB N N 22 4D7 C12 O13 SING N N 23 4D7 O13 HO13 SING N N 24 4D7 C16 N15 SING N N 25 4D7 N15 HN15 SING N N 26 4D7 C17 C16 SING N N 27 4D7 C16 O18 DOUB N N 28 4D7 C19 C17 DOUB Y N 29 4D7 C22 C17 SING Y N 30 4D7 O20 C19 SING Y N 31 4D7 C19 C23 SING N N 32 4D7 O20 C21 SING Y N 33 4D7 C21 C22 DOUB Y N 34 4D7 C21 H21 SING N N 35 4D7 C22 H22 SING N N 36 4D7 C23 H23 SING N N 37 4D7 C23 H23A SING N N 38 4D7 C23 H23B SING N N 39 4D7 N5 HN5 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4D7 SMILES ACDLabs 11.02 "O=C(NC(C(=O)O)Cc2nc1ccccc1n2)c3c(occ3)C" 4D7 SMILES_CANONICAL CACTVS 3.352 "Cc1occc1C(=O)N[C@H](Cc2[nH]c3ccccc3n2)C(O)=O" 4D7 SMILES CACTVS 3.352 "Cc1occc1C(=O)N[CH](Cc2[nH]c3ccccc3n2)C(O)=O" 4D7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1c(cco1)C(=O)N[C@H](Cc2[nH]c3ccccc3n2)C(=O)O" 4D7 SMILES "OpenEye OEToolkits" 1.7.0 "Cc1c(cco1)C(=O)NC(Cc2[nH]c3ccccc3n2)C(=O)O" 4D7 InChI InChI 1.03 "InChI=1S/C16H15N3O4/c1-9-10(6-7-23-9)15(20)19-13(16(21)22)8-14-17-11-4-2-3-5-12(11)18-14/h2-7,13H,8H2,1H3,(H,17,18)(H,19,20)(H,21,22)/t13-/m1/s1" 4D7 InChIKey InChI 1.03 IBXZTXVMQARJHH-CYBMUJFWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4D7 "SYSTEMATIC NAME" ACDLabs 11.02 "3-(1H-benzimidazol-2-yl)-N-[(2-methylfuran-3-yl)carbonyl]-D-alanine" 4D7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R)-3-(1H-benzimidazol-2-yl)-2-[(2-methylfuran-3-yl)carbonylamino]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4D7 "Create component" 2009-10-22 PDBJ 4D7 "Modify aromatic_flag" 2011-06-04 RCSB 4D7 "Modify descriptor" 2011-06-04 RCSB 4D7 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 4D7 _pdbx_chem_comp_synonyms.name "(R)-3-(1H-Benzoimidazol-2-yl)-2-[(2-methyl-furan-3-carbonyl)-amino]-propionic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##