data_4J5 # _chem_comp.id 4J5 _chem_comp.name "amino{[(3S)-3-amino-3-carboxypropyl]amino}methaniminium" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H13 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2015-10-08 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 161.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4J5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2N7W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4J5 OXT OXT O 0 1 N Y N Y N Y 1.970 -6.479 -1.911 -3.361 -1.280 -0.814 OXT 4J5 1 4J5 C C C 0 1 N N N Y N Y 3.001 -5.997 -1.221 -2.948 -0.253 -0.055 C 4J5 2 4J5 N N N 0 1 N N N Y Y N 4.796 -4.404 -1.762 -1.641 1.773 0.252 N 4J5 3 4J5 O O O 0 1 N N N Y N Y 2.960 -5.791 -0.007 -3.619 0.116 0.880 O 4J5 4 4J5 CA CA C 0 1 N N S Y N N 4.270 -5.732 -2.016 -1.648 0.441 -0.368 CA 4J5 5 4J5 CB CB C 0 1 N N N N N N 5.305 -6.781 -1.634 -0.483 -0.384 0.183 CB 4J5 6 4J5 ND ND N 0 1 N N N N N N 7.369 -6.278 -0.399 1.956 -0.536 0.286 ND 4J5 7 4J5 CE CE C 0 1 N N N N N N 7.921 -5.064 -0.428 3.245 -0.155 0.032 CE 4J5 8 4J5 CG CG C 0 1 N N N N N N 5.925 -6.464 -0.265 0.841 0.254 -0.242 CG 4J5 9 4J5 NH1 NH1 N 0 1 N N N N N N 9.213 -4.943 -0.563 4.258 -0.874 0.512 NH1 4J5 10 4J5 NH2 NH2 N 1 1 N N N N N N 7.182 -3.994 -0.313 3.486 0.934 -0.695 NH2 4J5 11 4J5 H H H 0 1 N N N Y Y N 5.628 -4.266 -2.300 -1.738 1.705 1.254 H 4J5 12 4J5 HA HA H 0 1 N N N Y N N 4.042 -5.839 -3.087 -1.541 0.543 -1.448 HA 4J5 13 4J5 HD HD H 0 1 N N N N N N 7.959 -7.082 -0.471 1.780 -1.330 0.815 HD 4J5 14 4J5 HB2 HB2 H 0 1 N N N N N N 4.820 -7.767 -1.590 -0.540 -0.412 1.271 HB2 4J5 15 4J5 HB3 HB3 H 0 1 N N N N N N 6.100 -6.797 -2.395 -0.540 -1.400 -0.209 HB3 4J5 16 4J5 HG2 HG2 H 0 1 N N N N N N 5.728 -7.297 0.426 0.898 0.281 -1.330 HG2 4J5 17 4J5 HG3 HG3 H 0 1 N N N N N N 5.475 -5.543 0.134 0.897 1.269 0.150 HG3 4J5 18 4J5 HH11 HH11 H 0 0 N N N N N N 9.631 -4.035 -0.578 5.172 -0.604 0.332 HH11 4J5 19 4J5 HH12 HH12 H 0 0 N N N N N N 9.785 -5.758 -0.652 4.082 -1.667 1.041 HH12 4J5 20 4J5 HH21 HH21 H 0 0 N N N N N N 6.191 -4.080 -0.209 2.748 1.457 -1.045 HH21 4J5 21 4J5 HH22 HH22 H 0 0 N N N N N N 7.607 -3.089 -0.329 4.400 1.204 -0.875 HH22 4J5 22 4J5 H2 HNA H 0 1 N Y N Y Y N 4.114 -3.720 -2.021 -0.807 2.283 0.003 HNA 4J5 23 4J5 HXT HXT H 0 1 N Y N Y N Y 1.237 -6.626 -1.325 -4.201 -1.694 -0.574 HXT 4J5 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4J5 O C DOUB N N 1 4J5 CA C SING N N 2 4J5 C OXT SING N N 3 4J5 CA N SING N N 4 4J5 N H SING N N 5 4J5 N H2 SING N N 6 4J5 OXT HXT SING N N 7 4J5 HA CA SING N N 8 4J5 CA CB SING N N 9 4J5 HB2 CB SING N N 10 4J5 CB HB3 SING N N 11 4J5 CB CG SING N N 12 4J5 HD ND SING N N 13 4J5 CE ND SING N N 14 4J5 ND CG SING N N 15 4J5 NH1 CE SING N N 16 4J5 CE NH2 DOUB N N 17 4J5 CG HG3 SING N N 18 4J5 CG HG2 SING N N 19 4J5 HH11 NH1 SING N N 20 4J5 HH12 NH1 SING N N 21 4J5 HH22 NH2 SING N N 22 4J5 NH2 HH21 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4J5 SMILES ACDLabs 12.01 "OC(=O)C(N)CCNC(=[N@H2+])N" 4J5 InChI InChI 1.03 "InChI=1S/C5H12N4O2/c6-3(4(10)11)1-2-9-5(7)8/h3H,1-2,6H2,(H,10,11)(H4,7,8,9)/p+1/t3-/m0/s1" 4J5 InChIKey InChI 1.03 IFPQOXNWLSRZKX-VKHMYHEASA-O 4J5 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCNC(N)=[NH2+])C(O)=O" 4J5 SMILES CACTVS 3.385 "N[CH](CCNC(N)=[NH2+])C(O)=O" 4J5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(CNC(=[NH2+])N)[C@@H](C(=O)O)N" 4J5 SMILES "OpenEye OEToolkits" 1.7.6 "C(CNC(=[NH2+])N)C(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4J5 "SYSTEMATIC NAME" ACDLabs 12.01 "amino{[(3S)-3-amino-3-carboxypropyl]amino}methaniminium" 4J5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(3S)-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]amino]methylidene]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4J5 "Create component" 2015-10-08 RCSB 4J5 "Other modification" 2018-04-17 EBI 4J5 "Initial release" 2018-12-12 RCSB 4J5 "Modify backbone" 2023-11-03 PDBE #