data_4KW # _chem_comp.id 4KW _chem_comp.name 1-monoenoyl-CoA _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H44 N7 O17 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Cyclohex-1-ene-1-carbonyl-CoA _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-04-01 _chem_comp.pdbx_modified_date 2022-07-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 875.672 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4KW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Z3X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4KW O3 O1 O 0 1 N N N 54.828 48.792 -1.521 3.192 4.903 0.752 O3 4KW 1 4KW C4 C1 C 0 1 N N N 57.850 44.662 -2.352 7.037 2.166 -0.228 C4 4KW 2 4KW C5 C2 C 0 1 N N N 58.047 45.685 -1.256 6.015 2.643 -1.262 C5 4KW 3 4KW O4 O2 O 0 1 N N N 56.182 49.976 -5.450 -0.710 3.665 0.104 O4 4KW 4 4KW C6 C3 C 0 1 N N N 57.018 47.701 -2.445 3.965 3.960 -1.312 C6 4KW 5 4KW N1 N1 N 0 1 N N N 55.607 44.144 -1.101 9.116 0.826 -0.197 N1 4KW 6 4KW C7 C4 C 0 1 N N R 55.845 48.786 -2.636 2.837 4.674 -0.613 C7 4KW 7 4KW C8 C5 C 0 1 N N N 55.107 48.550 -4.035 1.573 3.814 -0.674 C8 4KW 8 4KW N2 N2 N 0 1 N N N 56.982 46.693 -1.410 4.977 3.433 -0.595 N2 4KW 9 4KW C9 C6 C 0 1 N N N 54.530 47.127 -3.993 1.109 3.693 -2.127 C9 4KW 10 4KW O5 O3 O 0 1 N N N 56.847 52.072 -6.491 -2.669 5.413 0.247 O5 4KW 11 4KW C10 C7 C 0 1 N N N 54.128 49.703 -4.113 1.876 2.422 -0.118 C10 4KW 12 4KW O6 O4 O 0 1 N N N 55.221 50.728 -7.861 -1.789 4.252 2.309 O6 4KW 13 4KW C11 C8 C 0 1 N N N 56.041 48.603 -5.248 0.471 4.468 0.161 C11 4KW 14 4KW C12 C9 C 0 1 N N N 57.555 51.956 -9.866 -6.639 0.949 0.870 C12 4KW 15 4KW N3 N3 N 0 1 Y N N 61.530 52.947 -10.200 -6.588 -3.616 0.113 N3 4KW 16 4KW C13 C10 C 0 1 N N R 58.108 52.921 -10.897 -7.103 -0.068 -0.176 C13 4KW 17 4KW O7 O5 O 0 1 N N N 57.620 49.838 -7.425 -3.144 2.865 0.692 O7 4KW 18 4KW C14 C11 C 0 1 N N R 60.377 53.127 -11.115 -7.149 -2.370 -0.416 C14 4KW 19 4KW O8 O6 O 0 1 N N N 59.019 48.477 -8.923 -4.211 1.863 2.876 O8 4KW 20 4KW C15 C12 C 0 1 Y N N 61.667 51.999 -9.255 -5.719 -3.730 1.158 C15 4KW 21 4KW N4 N4 N 0 1 Y N N 62.850 52.204 -8.611 -5.432 -4.983 1.362 N4 4KW 22 4KW O14 O7 O 0 1 N N N 58.330 53.800 -15.658 -10.340 2.055 -0.246 O14 4KW 23 4KW P3 P1 P 0 1 N N N 57.650 52.962 -14.600 -10.710 0.761 -0.862 P3 4KW 24 4KW O15 O8 O 0 1 N N N 56.196 53.405 -14.524 -11.798 0.018 0.064 O15 4KW 25 4KW O16 O9 O 0 1 N N N 57.732 51.477 -14.945 -11.336 1.021 -2.322 O16 4KW 26 4KW O13 O10 O 0 1 N N N 58.374 53.228 -13.211 -9.399 -0.164 -0.997 O13 4KW 27 4KW C21 C13 C 0 1 N N S 58.527 52.285 -12.197 -8.557 -0.488 0.111 C21 4KW 28 4KW C20 C14 C 0 1 N N R 59.945 51.906 -11.891 -8.478 -2.022 0.301 C20 4KW 29 4KW O12 O11 O 0 1 N N N 60.755 51.597 -12.980 -9.583 -2.672 -0.330 O12 4KW 30 4KW C19 C15 C 0 1 Y N N 62.618 53.793 -10.118 -6.846 -4.882 -0.347 C19 4KW 31 4KW C16 C16 C 0 1 Y N N 63.459 53.306 -9.106 -6.096 -5.750 0.464 C16 4KW 32 4KW C17 C17 C 0 1 Y N N 64.663 53.998 -8.852 -6.174 -7.130 0.209 C17 4KW 33 4KW N7 N5 N 0 1 N N N 65.545 53.537 -7.823 -5.458 -8.033 0.976 N7 4KW 34 4KW N5 N6 N 0 1 Y N N 64.967 55.121 -9.559 -6.950 -7.547 -0.785 N5 4KW 35 4KW C18 C18 C 0 1 Y N N 64.159 55.550 -10.540 -7.637 -6.693 -1.521 C18 4KW 36 4KW N6 N7 N 0 1 Y N N 63.009 54.886 -10.801 -7.595 -5.393 -1.319 N6 4KW 37 4KW O11 O12 O 0 1 N N N 59.228 53.634 -10.411 -6.292 -1.252 -0.098 O11 4KW 38 4KW O10 O13 O 0 1 N N N 58.467 50.908 -9.616 -5.327 1.408 0.540 O10 4KW 39 4KW P2 P2 P 0 1 N N N 57.947 49.538 -8.939 -4.527 2.487 1.426 P2 4KW 40 4KW O9 O14 O 0 1 N N N 56.726 49.042 -9.721 -5.351 3.706 1.582 O9 4KW 41 4KW P1 P3 P 0 1 N N N 56.394 50.706 -6.857 -2.072 4.053 0.869 P1 4KW 42 4KW O2 O15 O 0 1 N N N 57.938 47.675 -3.247 3.962 3.859 -2.521 O2 4KW 43 4KW C1 C19 C 0 1 N N N 56.537 43.902 -2.197 8.104 1.353 -0.915 C1 4KW 44 4KW O1 O16 O 0 1 N N N 56.218 43.059 -3.038 8.052 1.172 -2.113 O1 4KW 45 4KW C2 C20 C 0 1 N N N 54.373 43.357 -1.108 10.153 0.036 -0.865 C2 4KW 46 4KW C3 C21 C 0 1 N N N 54.549 41.924 -0.677 11.175 -0.441 0.169 C3 4KW 47 4KW S1 S1 S 0 1 N N N 52.914 41.201 -0.398 12.457 -1.418 -0.655 S1 4KW 48 4KW C22 C22 C 0 1 N N N 52.270 42.078 1.074 13.469 -1.825 0.728 C22 4KW 49 4KW O17 O17 O 0 1 N N N 53.218 42.737 1.742 13.167 -1.431 1.839 O17 4KW 50 4KW C27 C23 C 0 1 N N N 50.878 41.952 1.323 14.678 -2.641 0.540 C27 4KW 51 4KW C25 C24 C 0 1 N N N 50.328 42.597 2.430 15.406 -2.923 1.599 C25 4KW 52 4KW C23 C25 C 0 1 N N N 49.210 41.948 3.156 16.667 -3.736 1.553 C23 4KW 53 4KW C24 C26 C 0 1 N N N 48.144 41.468 2.212 16.740 -4.519 0.240 C24 4KW 54 4KW C26 C27 C 0 1 N N N 48.762 40.595 1.123 16.471 -3.552 -0.919 C26 4KW 55 4KW C28 C28 C 0 1 N N N 50.035 41.086 0.442 15.006 -3.109 -0.847 C28 4KW 56 4KW H1 H1 H 0 1 N N N 55.268 48.932 -0.691 3.372 4.095 1.252 H1 4KW 57 4KW H2 H2 H 0 1 N N N 58.682 43.943 -2.320 7.493 3.029 0.256 H2 4KW 58 4KW H3 H3 H 0 1 N N N 57.849 45.178 -3.323 6.537 1.552 0.520 H3 4KW 59 4KW H4 H4 H 0 1 N N N 57.970 45.202 -0.271 6.514 3.257 -2.011 H4 4KW 60 4KW H5 H5 H 0 1 N N N 59.034 46.160 -1.356 5.558 1.780 -1.747 H5 4KW 61 4KW H6 H6 H 0 1 N N N 55.802 44.812 -0.383 9.157 0.971 0.761 H6 4KW 62 4KW H7 H7 H 0 1 N N N 56.321 49.777 -2.679 2.652 5.629 -1.105 H7 4KW 63 4KW H8 H8 H 0 1 N N N 56.208 46.679 -0.777 5.019 3.578 0.363 H8 4KW 64 4KW H9 H9 H 0 1 N N N 53.848 47.033 -3.135 1.861 3.158 -2.706 H9 4KW 65 4KW H10 H10 H 0 1 N N N 53.979 46.927 -4.924 0.166 3.147 -2.163 H10 4KW 66 4KW H11 H11 H 0 1 N N N 55.351 46.402 -3.890 0.968 4.689 -2.548 H11 4KW 67 4KW H12 H12 H 0 1 N N N 56.321 52.715 -6.952 -2.878 5.355 -0.695 H12 4KW 68 4KW H13 H13 H 0 1 N N N 53.454 49.671 -3.245 2.662 1.956 -0.713 H13 4KW 69 4KW H14 H14 H 0 1 N N N 54.681 50.654 -4.113 2.207 2.508 0.917 H14 4KW 70 4KW H15 H15 H 0 1 N N N 53.538 49.621 -5.038 0.976 1.809 -0.162 H15 4KW 71 4KW H16 H16 H 0 1 N N N 55.587 48.115 -6.123 0.255 5.461 -0.235 H16 4KW 72 4KW H17 H17 H 0 1 N N N 57.009 48.131 -5.027 0.802 4.555 1.196 H17 4KW 73 4KW H18 H18 H 0 1 N N N 57.366 52.500 -8.929 -7.327 1.795 0.884 H18 4KW 74 4KW H19 H19 H 0 1 N N N 56.612 51.531 -10.240 -6.623 0.478 1.853 H19 4KW 75 4KW H20 H20 H 0 1 N N N 57.310 53.642 -11.128 -7.030 0.367 -1.172 H20 4KW 76 4KW H21 H21 H 0 1 N N N 60.671 53.884 -11.857 -7.299 -2.445 -1.493 H21 4KW 77 4KW H22 H22 H 0 1 N N N 58.718 47.714 -9.403 -3.673 1.060 2.850 H22 4KW 78 4KW H23 H23 H 0 1 N N N 60.960 51.210 -9.043 -5.327 -2.903 1.731 H23 4KW 79 4KW H24 H24 H 0 1 N N N 56.043 54.101 -15.152 -12.087 -0.839 -0.279 H24 4KW 80 4KW H25 H25 H 0 1 N N N 58.199 51.367 -15.765 -12.131 1.572 -2.316 H25 4KW 81 4KW H26 H26 H 0 1 N N N 57.926 51.383 -12.386 -8.922 -0.007 1.019 H26 4KW 82 4KW H27 H27 H 0 1 N N N 59.926 51.054 -11.196 -8.429 -2.281 1.359 H27 4KW 83 4KW H28 H28 H 0 1 N N N 61.626 51.373 -12.674 -9.578 -3.635 -0.239 H28 4KW 84 4KW H29 H29 H 0 1 N N N 66.330 54.152 -7.756 -4.895 -7.716 1.699 H29 4KW 85 4KW H30 H30 H 0 1 N N N 65.059 53.522 -6.949 -5.520 -8.983 0.790 H30 4KW 86 4KW H31 H31 H 0 1 N N N 64.425 56.422 -11.119 -8.256 -7.075 -2.319 H31 4KW 87 4KW H32 H32 H 0 1 N N N 53.655 43.836 -0.426 9.697 -0.827 -1.349 H32 4KW 88 4KW H33 H33 H 0 1 N N N 53.967 43.362 -2.130 10.653 0.650 -1.613 H33 4KW 89 4KW H34 H34 H 0 1 N N N 55.073 41.362 -1.464 11.632 0.423 0.654 H34 4KW 90 4KW H35 H35 H 0 1 N N N 55.135 41.886 0.253 10.675 -1.055 0.918 H35 4KW 91 4KW H37 H37 H 0 1 N N N 50.710 43.554 2.753 15.078 -2.547 2.557 H37 4KW 92 4KW H39 H39 H 0 1 N N N 48.768 42.674 3.854 17.528 -3.072 1.626 H39 4KW 93 4KW H40 H40 H 0 1 N N N 49.601 41.088 3.720 16.677 -4.435 2.389 H40 4KW 94 4KW H41 H41 H 0 1 N N N 47.652 42.335 1.747 17.733 -4.956 0.130 H41 4KW 95 4KW H42 H42 H 0 1 N N N 47.401 40.881 2.771 15.990 -5.310 0.243 H42 4KW 96 4KW H43 H43 H 0 1 N N N 48.002 40.465 0.339 17.124 -2.685 -0.832 H43 4KW 97 4KW H44 H44 H 0 1 N N N 48.991 39.620 1.577 16.656 -4.057 -1.867 H44 4KW 98 4KW H45 H45 H 0 1 N N N 50.629 40.211 0.140 14.362 -3.946 -1.115 H45 4KW 99 4KW H46 H46 H 0 1 N N N 49.753 41.664 -0.450 14.842 -2.291 -1.549 H46 4KW 100 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4KW O14 P3 DOUB N N 1 4KW O16 P3 SING N N 2 4KW P3 O15 SING N N 3 4KW P3 O13 SING N N 4 4KW O13 C21 SING N N 5 4KW O12 C20 SING N N 6 4KW C21 C20 SING N N 7 4KW C21 C13 SING N N 8 4KW C20 C14 SING N N 9 4KW C14 O11 SING N N 10 4KW C14 N3 SING N N 11 4KW C13 O11 SING N N 12 4KW C13 C12 SING N N 13 4KW N6 C18 DOUB Y N 14 4KW N6 C19 SING Y N 15 4KW C18 N5 SING Y N 16 4KW N3 C19 SING Y N 17 4KW N3 C15 SING Y N 18 4KW C19 C16 DOUB Y N 19 4KW C12 O10 SING N N 20 4KW O9 P2 DOUB N N 21 4KW O10 P2 SING N N 22 4KW N5 C17 DOUB Y N 23 4KW C15 N4 DOUB Y N 24 4KW C16 C17 SING Y N 25 4KW C16 N4 SING Y N 26 4KW P2 O8 SING N N 27 4KW P2 O7 SING N N 28 4KW C17 N7 SING N N 29 4KW O6 P1 DOUB N N 30 4KW O7 P1 SING N N 31 4KW P1 O5 SING N N 32 4KW P1 O4 SING N N 33 4KW O4 C11 SING N N 34 4KW C11 C8 SING N N 35 4KW C10 C8 SING N N 36 4KW C8 C9 SING N N 37 4KW C8 C7 SING N N 38 4KW O2 C6 DOUB N N 39 4KW O1 C1 DOUB N N 40 4KW C7 C6 SING N N 41 4KW C7 O3 SING N N 42 4KW C6 N2 SING N N 43 4KW C4 C1 SING N N 44 4KW C4 C5 SING N N 45 4KW C1 N1 SING N N 46 4KW N2 C5 SING N N 47 4KW C2 N1 SING N N 48 4KW C2 C3 SING N N 49 4KW C3 S1 SING N N 50 4KW S1 C22 SING N N 51 4KW C28 C26 SING N N 52 4KW C28 C27 SING N N 53 4KW C22 C27 SING N N 54 4KW C22 O17 DOUB N N 55 4KW C26 C24 SING N N 56 4KW C27 C25 DOUB N N 57 4KW C24 C23 SING N N 58 4KW C25 C23 SING N N 59 4KW O3 H1 SING N N 60 4KW C4 H2 SING N N 61 4KW C4 H3 SING N N 62 4KW C5 H4 SING N N 63 4KW C5 H5 SING N N 64 4KW N1 H6 SING N N 65 4KW C7 H7 SING N N 66 4KW N2 H8 SING N N 67 4KW C9 H9 SING N N 68 4KW C9 H10 SING N N 69 4KW C9 H11 SING N N 70 4KW O5 H12 SING N N 71 4KW C10 H13 SING N N 72 4KW C10 H14 SING N N 73 4KW C10 H15 SING N N 74 4KW C11 H16 SING N N 75 4KW C11 H17 SING N N 76 4KW C12 H18 SING N N 77 4KW C12 H19 SING N N 78 4KW C13 H20 SING N N 79 4KW C14 H21 SING N N 80 4KW O8 H22 SING N N 81 4KW C15 H23 SING N N 82 4KW O15 H24 SING N N 83 4KW O16 H25 SING N N 84 4KW C21 H26 SING N N 85 4KW C20 H27 SING N N 86 4KW O12 H28 SING N N 87 4KW N7 H29 SING N N 88 4KW N7 H30 SING N N 89 4KW C18 H31 SING N N 90 4KW C2 H32 SING N N 91 4KW C2 H33 SING N N 92 4KW C3 H34 SING N N 93 4KW C3 H35 SING N N 94 4KW C25 H37 SING N N 95 4KW C23 H39 SING N N 96 4KW C23 H40 SING N N 97 4KW C24 H41 SING N N 98 4KW C24 H42 SING N N 99 4KW C26 H43 SING N N 100 4KW C26 H44 SING N N 101 4KW C28 H45 SING N N 102 4KW C28 H46 SING N N 103 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4KW SMILES ACDLabs 12.01 "OC(C(NCCC(NCCSC(C1=CCCCC1)=O)=O)=O)C(C)(C)COP(O)(=O)OP(O)(OCC4OC(n2c3c(nc2)c(N)ncn3)C(C4OP(=O)(O)O)O)=O" 4KW InChI InChI 1.03 "InChI=1S/C28H44N7O17P3S/c1-28(2,22(38)25(39)31-9-8-18(36)30-10-11-56-27(40)16-6-4-3-5-7-16)13-49-55(46,47)52-54(44,45)48-12-17-21(51-53(41,42)43)20(37)26(50-17)35-15-34-19-23(29)32-14-33-24(19)35/h6,14-15,17,20-22,26,37-38H,3-5,7-13H2,1-2H3,(H,30,36)(H,31,39)(H,44,45)(H,46,47)(H2,29,32,33)(H2,41,42,43)/t17-,20-,21-,22+,26-/m1/s1" 4KW InChIKey InChI 1.03 YTTZSBMCHSFQSJ-TYHXJLICSA-N 4KW SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C4=CCCCC4" 4KW SMILES CACTVS 3.385 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)C4=CCCCC4" 4KW SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)C4=CCCCC4)O" 4KW SMILES "OpenEye OEToolkits" 1.9.2 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)C4=CCCCC4)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4KW "SYSTEMATIC NAME" ACDLabs 12.01 "S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} cyclohex-1-ene-1-carbothioate (non-preferred name)" 4KW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] cyclohexene-1-carbothioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4KW "Create component" 2015-04-01 EBI 4KW "Modify synonyms" 2020-06-05 PDBE 4KW "Initial release" 2022-07-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 4KW _pdbx_chem_comp_synonyms.name Cyclohex-1-ene-1-carbonyl-CoA _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #