data_4R8 # _chem_comp.id 4R8 _chem_comp.name "(6E,10Z,13Z,16Z,19Z)-4-oxodocosa-6,10,13,16,19-pentaenoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C22 H32 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-OXODOCOSAHEXAENOIC ACID" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-06-02 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 344.488 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4R8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VV3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4R8 C22 C22 C 0 1 N N N 14.519 23.924 8.177 -8.694 -2.454 -2.006 C22 4R8 1 4R8 C21 C21 C 0 1 N N N 15.391 22.868 7.533 -7.916 -2.457 -0.688 C21 4R8 2 4R8 C20 C20 C 0 1 N N N 16.829 23.088 7.935 -6.606 -3.177 -0.880 C20 4R8 3 4R8 C19 C19 C 0 1 N N N 17.476 22.156 8.629 -5.484 -2.600 -0.530 C19 4R8 4 4R8 C18 C18 C 0 1 N N N 16.770 20.877 9.016 -5.510 -1.289 0.213 C18 4R8 5 4R8 C17 C17 C 0 1 N N N 15.980 21.102 10.282 -4.697 -1.411 1.476 C17 4R8 6 4R8 C16 C16 C 0 1 N N N 14.682 20.815 10.316 -3.756 -0.538 1.736 C16 4R8 7 4R8 C15 C15 C 0 1 N N N 13.998 20.265 9.087 -3.594 0.678 0.861 C15 4R8 8 4R8 C14 C14 C 0 1 N N N 13.215 19.028 9.457 -3.616 1.919 1.717 C14 4R8 9 4R8 C13 C13 C 0 1 N N N 13.831 17.852 9.543 -2.643 2.792 1.630 C13 4R8 10 4R8 C12 C12 C 0 1 N N N 15.313 17.754 9.269 -1.595 2.648 0.556 C12 4R8 11 4R8 C11 C11 C 0 1 N N N 15.892 16.593 10.042 -1.490 3.937 -0.218 C11 4R8 12 4R8 C10 C10 C 0 1 N N N 16.902 16.793 10.885 -0.326 4.523 -0.359 C10 4R8 13 4R8 C9 C9 C 0 1 N N N 17.469 18.180 11.069 0.928 3.830 0.109 C9 4R8 14 4R8 C8 C8 C 0 1 N N N 18.623 18.129 12.062 1.950 3.803 -1.029 C8 4R8 15 4R8 C7 C7 C 0 1 N N N 18.127 17.590 13.383 3.204 3.111 -0.562 C7 4R8 16 4R8 C6 C6 C 0 1 N N N 18.970 16.980 14.211 3.677 2.089 -1.231 C6 4R8 17 4R8 C5 C5 C 0 1 N N N 18.474 16.441 15.531 4.931 1.396 -0.763 C5 4R8 18 4R8 C4 C4 C 0 1 N N N 19.513 16.688 16.599 4.655 -0.075 -0.585 C4 4R8 19 4R8 O3 O3 O 0 1 N N N 20.333 15.825 16.867 3.555 -0.515 -0.813 O3 4R8 20 4R8 C3 C3 C 0 1 N N N 19.533 18.008 17.332 5.754 -0.996 -0.120 C3 4R8 21 4R8 C2 C2 C 0 1 N N N 18.517 17.974 18.467 5.215 -2.424 -0.022 C2 4R8 22 4R8 C1 C1 C 0 1 N N N 19.140 18.549 19.717 6.313 -3.345 0.442 C1 4R8 23 4R8 O1 O1 O 0 1 N N N 20.309 18.987 19.654 7.415 -2.905 0.671 O1 4R8 24 4R8 O2 O2 O 0 1 N N N 18.463 18.565 20.768 6.068 -4.655 0.601 O2 4R8 25 4R8 H221 1H22 H 0 0 N N N 14.307 23.640 9.219 -8.108 -1.946 -2.772 H221 4R8 26 4R8 H222 2H22 H 0 0 N N N 15.042 24.892 8.160 -8.886 -3.480 -2.317 H222 4R8 27 4R8 H223 3H22 H 0 0 N N N 13.574 24.008 7.621 -9.641 -1.932 -1.867 H223 4R8 28 4R8 H211 1H21 H 0 0 N N N 15.066 21.871 7.866 -7.723 -1.430 -0.378 H211 4R8 29 4R8 H212 2H21 H 0 0 N N N 15.302 22.937 6.439 -8.501 -2.964 0.078 H212 4R8 30 4R8 H20 H20 H 0 1 N N N 17.333 24.003 7.659 -6.593 -4.170 -1.306 H20 4R8 31 4R8 H19 H19 H 0 1 N N N 18.505 22.313 8.916 -4.539 -3.064 -0.773 H19 4R8 32 4R8 H181 1H18 H 0 0 N N N 16.088 20.575 8.207 -5.088 -0.506 -0.416 H181 4R8 33 4R8 H182 2H18 H 0 0 N N N 17.514 20.084 9.184 -6.540 -1.036 0.467 H182 4R8 34 4R8 H17 H17 H 0 1 N N N 16.469 21.496 11.161 -4.890 -2.219 2.167 H17 4R8 35 4R8 H16 H16 H 0 1 N N N 14.117 20.975 11.222 -3.096 -0.689 2.577 H16 4R8 36 4R8 H151 1H15 H 0 0 N N N 13.314 21.023 8.678 -2.644 0.620 0.330 H151 4R8 37 4R8 H152 2H15 H 0 0 N N N 14.754 20.007 8.331 -4.411 0.719 0.141 H152 4R8 38 4R8 H14 H14 H 0 1 N N N 12.155 19.098 9.652 -4.434 2.089 2.401 H14 4R8 39 4R8 H13 H13 H 0 1 N N N 13.271 16.967 9.809 -2.591 3.614 2.328 H13 4R8 40 4R8 H121 1H12 H 0 0 N N N 15.477 17.596 8.193 -0.633 2.420 1.015 H121 4R8 41 4R8 H122 2H12 H 0 0 N N N 15.806 18.686 9.583 -1.876 1.840 -0.119 H122 4R8 42 4R8 H11 H11 H 0 1 N N N 15.486 15.601 9.911 -2.373 4.377 -0.657 H11 4R8 43 4R8 H10 H10 H 0 1 N N N 17.316 15.963 11.438 -0.266 5.502 -0.810 H10 4R8 44 4R8 H9C1 1H9C H 0 0 N N N 17.833 18.558 10.103 1.345 4.370 0.959 H9C1 4R8 45 4R8 H9C2 2H9C H 0 0 N N N 16.685 18.849 11.452 0.689 2.809 0.407 H9C2 4R8 46 4R8 H8 H8 H 0 1 N N N 19.414 17.472 11.672 1.533 3.264 -1.880 H8 4R8 47 4R8 H7 H7 H 0 1 N N N 17.088 17.700 13.655 3.713 3.457 0.326 H7 4R8 48 4R8 H6 H6 H 0 1 N N N 20.009 16.870 13.939 3.167 1.742 -2.118 H6 4R8 49 4R8 H5C1 1H5C H 0 0 N N N 17.538 16.949 15.806 5.718 1.531 -1.505 H5C1 4R8 50 4R8 H5C2 2H5C H 0 0 N N N 18.292 15.360 15.440 5.249 1.824 0.187 H5C2 4R8 51 4R8 H3C1 1H3C H 0 0 N N N 20.538 18.183 17.744 6.578 -0.967 -0.834 H3C1 4R8 52 4R8 H3C2 2H3C H 0 0 N N N 19.276 18.819 16.634 6.109 -0.673 0.858 H3C2 4R8 53 4R8 H2C1 1H2C H 0 0 N N N 17.636 18.571 18.189 4.391 -2.453 0.691 H2C1 4R8 54 4R8 H2C2 2H2C H 0 0 N N N 18.211 16.934 18.654 4.860 -2.747 -1.001 H2C2 4R8 55 4R8 H2 H2 H 0 1 N N N 18.975 18.951 21.469 6.804 -5.206 0.901 H2 4R8 56 4R8 HOT HOT H 0 1 N N N 19.027 19.142 12.208 2.188 4.824 -1.328 HOT 4R8 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4R8 C22 C21 SING N N 1 4R8 C21 C20 SING N N 2 4R8 C20 C19 DOUB N N 3 4R8 C19 C18 SING N N 4 4R8 C18 C17 SING N N 5 4R8 C17 C16 DOUB N N 6 4R8 C16 C15 SING N N 7 4R8 C15 C14 SING N Z 8 4R8 C14 C13 DOUB N N 9 4R8 C13 C12 SING N N 10 4R8 C12 C11 SING N N 11 4R8 C11 C10 DOUB N N 12 4R8 C10 C9 SING N N 13 4R8 C9 C8 SING N N 14 4R8 C8 C7 SING N Z 15 4R8 C7 C6 DOUB N N 16 4R8 C6 C5 SING N N 17 4R8 C5 C4 SING N N 18 4R8 C4 O3 DOUB N N 19 4R8 C4 C3 SING N N 20 4R8 C3 C2 SING N N 21 4R8 C2 C1 SING N Z 22 4R8 C1 O1 DOUB N N 23 4R8 C1 O2 SING N N 24 4R8 C22 H221 SING N N 25 4R8 C22 H222 SING N N 26 4R8 C22 H223 SING N N 27 4R8 C21 H211 SING N N 28 4R8 C21 H212 SING N Z 29 4R8 C20 H20 SING N N 30 4R8 C19 H19 SING N N 31 4R8 C18 H181 SING N N 32 4R8 C18 H182 SING N N 33 4R8 C17 H17 SING N N 34 4R8 C16 H16 SING N N 35 4R8 C15 H151 SING N N 36 4R8 C15 H152 SING N N 37 4R8 C14 H14 SING N N 38 4R8 C13 H13 SING N E 39 4R8 C12 H121 SING N N 40 4R8 C12 H122 SING N N 41 4R8 C11 H11 SING N N 42 4R8 C10 H10 SING N N 43 4R8 C9 H9C1 SING N N 44 4R8 C9 H9C2 SING N N 45 4R8 C8 H8 SING N N 46 4R8 C8 HOT SING N N 47 4R8 C7 H7 SING N N 48 4R8 C6 H6 SING N N 49 4R8 C5 H5C1 SING N N 50 4R8 C5 H5C2 SING N N 51 4R8 C3 H3C1 SING N N 52 4R8 C3 H3C2 SING N N 53 4R8 C2 H2C1 SING N N 54 4R8 C2 H2C2 SING N N 55 4R8 O2 H2 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4R8 SMILES ACDLabs 10.04 "O=C(C/C=C/CC\C=C/C\C=C/C\C=C/C\C=C/CC)CCC(=O)O" 4R8 SMILES_CANONICAL CACTVS 3.341 "CC\C=C/C/C=C\C\C=C/C/C=C\CC\C=C\CC(=O)CCC(O)=O" 4R8 SMILES CACTVS 3.341 "CCC=CCC=CCC=CCC=CCCC=CCC(=O)CCC(O)=O" 4R8 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC\C=C/C\C=C/C\C=C/C\C=C/CC\C=C\CC(=O)CCC(=O)O" 4R8 SMILES "OpenEye OEToolkits" 1.5.0 "CCC=CCC=CCC=CCC=CCCC=CCC(=O)CCC(=O)O" 4R8 InChI InChI 1.03 "InChI=1S/C22H32O3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-21(23)19-20-22(24)25/h3-4,6-7,9-10,12-13,16-17H,2,5,8,11,14-15,18-20H2,1H3,(H,24,25)/b4-3-,7-6-,10-9-,13-12-,17-16+" 4R8 InChIKey InChI 1.03 MTWLPOVQRMKOLI-IIFHDYRKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4R8 "SYSTEMATIC NAME" ACDLabs 10.04 "(6E,10Z,13Z,16Z,19Z)-4-oxodocosa-6,10,13,16,19-pentaenoic acid" 4R8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(6E,10Z,13Z,16Z,19Z)-4-oxodocosa-6,10,13,16,19-pentaenoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4R8 "Create component" 2008-06-02 EBI 4R8 "Modify descriptor" 2011-06-04 RCSB 4R8 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 4R8 _pdbx_chem_comp_synonyms.name "4-OXODOCOSAHEXAENOIC ACID" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##