data_4SU # _chem_comp.id 4SU _chem_comp.name "4-THIOURIDINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N2 O8 P S" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces S4U _chem_comp.formula_weight 340.247 _chem_comp.one_letter_code U _chem_comp.three_letter_code 4SU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1C0A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4SU N1 N1 N 0 1 N N N 63.154 13.727 18.838 0.383 0.505 2.126 N1 4SU 1 4SU C2 C2 C 0 1 N N N 64.392 13.288 19.235 -0.353 -0.614 2.243 C2 4SU 2 4SU N3 N3 N 0 1 N N N 65.444 13.734 18.479 -1.082 -0.849 3.350 N3 4SU 3 4SU C4 C4 C 0 1 N N N 65.393 14.561 17.376 -1.093 0.043 4.359 C4 4SU 4 4SU C5 C5 C 0 1 N N N 64.064 14.981 17.022 -0.328 1.228 4.248 C5 4SU 5 4SU C6 C6 C 0 1 N N N 63.015 14.557 17.746 0.398 1.438 3.130 C6 4SU 6 4SU O2 O2 O 0 1 N N N 64.547 12.555 20.187 -0.353 -1.429 1.341 O2 4SU 7 4SU S4 S4 S 0 1 N N N 66.471 14.892 16.753 -2.026 -0.252 5.764 S4 4SU 8 4SU "C1'" C1* C 0 1 N N R 61.999 13.272 19.625 1.171 0.732 0.912 "C1'" 4SU 9 4SU "C2'" C2* C 0 1 N N R 61.785 14.056 20.917 2.207 -0.397 0.724 "C2'" 4SU 10 4SU "O2'" O2* O 0 1 N N N 61.255 13.167 21.876 3.490 0.011 1.201 "O2'" 4SU 11 4SU "C3'" C3* C 0 1 N N S 60.724 15.065 20.500 2.244 -0.622 -0.803 "C3'" 4SU 12 4SU "C4'" C4* C 0 1 N N R 59.879 14.273 19.518 1.225 0.396 -1.361 "C4'" 4SU 13 4SU "O3'" O3* O 0 1 N N N 59.926 15.428 21.608 3.551 -0.356 -1.317 "O3'" 4SU 14 4SU "O4'" O4* O 0 1 N N N 60.827 13.409 18.838 0.328 0.658 -0.258 "O4'" 4SU 15 4SU "C5'" C5* C 0 1 N N N 59.164 15.117 18.500 0.458 -0.200 -2.542 "C5'" 4SU 16 4SU "O5'" O5* O 0 1 N N N 60.122 15.869 17.763 -0.525 0.734 -2.991 "O5'" 4SU 17 4SU P P P 0 1 N N N 59.736 17.216 17.019 -1.291 0.045 -4.229 P 4SU 18 4SU OP1 O1P O 0 1 N N N 61.010 17.801 16.545 -1.928 -1.211 -3.777 OP1 4SU 19 4SU OP2 O2P O 0 1 N N N 58.830 18.014 17.876 -2.420 1.048 -4.787 OP2 4SU 20 4SU OP3 O3P O 0 1 N Y N 58.930 16.738 15.732 -0.235 -0.279 -5.400 OP3 4SU 21 4SU HN3 HN3 H 0 1 N N N 66.368 13.414 18.769 -1.604 -1.664 3.420 HN3 4SU 22 4SU H5 H5 H 0 1 N N N 63.843 15.647 16.171 -0.325 1.954 5.047 H5 4SU 23 4SU H6 H6 H 0 1 N N N 62.013 14.899 17.435 0.988 2.336 3.027 H6 4SU 24 4SU "H1'" H1* H 0 1 N N N 62.207 12.213 19.905 1.669 1.700 0.959 "H1'" 4SU 25 4SU "H2'" H2* H 0 1 N N N 62.698 14.527 21.348 1.881 -1.303 1.235 "H2'" 4SU 26 4SU "HO2'" *HO2 H 0 0 N N N 61.121 13.655 22.680 4.105 -0.708 1.002 "HO2'" 4SU 27 4SU "H3'" H3* H 0 1 N N N 61.154 16.005 20.082 1.939 -1.640 -1.047 "H3'" 4SU 28 4SU "H4'" H4* H 0 1 N N N 59.071 13.735 20.067 1.733 1.312 -1.663 "H4'" 4SU 29 4SU "HO3'" *HO3 H 0 0 N Y N 59.263 16.057 21.347 4.147 -1.001 -0.913 "HO3'" 4SU 30 4SU "H5'" 1H5* H 0 1 N N N 58.500 14.512 17.839 1.151 -0.415 -3.355 "H5'" 4SU 31 4SU "H5''" 2H5* H 0 0 N N N 58.380 15.763 18.960 -0.032 -1.121 -2.229 "H5''" 4SU 32 4SU HOP2 2HOP H 0 0 N N N 58.598 18.820 17.430 -2.853 0.598 -5.525 HOP2 4SU 33 4SU HOP3 3HOP H 0 0 N N N 58.698 17.544 15.286 0.156 0.564 -5.665 HOP3 4SU 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4SU N1 C2 SING N N 1 4SU N1 C6 SING N N 2 4SU N1 "C1'" SING N N 3 4SU C2 N3 SING N N 4 4SU C2 O2 DOUB N N 5 4SU N3 C4 SING N N 6 4SU N3 HN3 SING N N 7 4SU C4 C5 SING N N 8 4SU C4 S4 DOUB N N 9 4SU C5 C6 DOUB N N 10 4SU C5 H5 SING N N 11 4SU C6 H6 SING N N 12 4SU "C1'" "C2'" SING N N 13 4SU "C1'" "O4'" SING N N 14 4SU "C1'" "H1'" SING N N 15 4SU "C2'" "O2'" SING N N 16 4SU "C2'" "C3'" SING N N 17 4SU "C2'" "H2'" SING N N 18 4SU "O2'" "HO2'" SING N N 19 4SU "C3'" "C4'" SING N N 20 4SU "C3'" "O3'" SING N N 21 4SU "C3'" "H3'" SING N N 22 4SU "C4'" "O4'" SING N N 23 4SU "C4'" "C5'" SING N N 24 4SU "C4'" "H4'" SING N N 25 4SU "O3'" "HO3'" SING N N 26 4SU "C5'" "O5'" SING N N 27 4SU "C5'" "H5'" SING N N 28 4SU "C5'" "H5''" SING N N 29 4SU "O5'" P SING N N 30 4SU P OP1 DOUB N N 31 4SU P OP2 SING N N 32 4SU P OP3 SING N N 33 4SU OP2 HOP2 SING N N 34 4SU OP3 HOP3 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4SU SMILES ACDLabs 10.04 "S=C1NC(=O)N(C=C1)C2OC(C(O)C2O)COP(=O)(O)O" 4SU SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=S)NC2=O" 4SU SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=S)NC2=O" 4SU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=S)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" 4SU SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=S)C2C(C(C(O2)COP(=O)(O)O)O)O" 4SU InChI InChI 1.03 "InChI=1S/C9H13N2O8PS/c12-6-4(3-18-20(15,16)17)19-8(7(6)13)11-2-1-5(21)10-9(11)14/h1-2,4,6-8,12-13H,3H2,(H,10,14,21)(H2,15,16,17)/t4-,6-,7-,8-/m1/s1" 4SU InChIKey InChI 1.03 CKTAUHRBDDXUDJ-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4SU "SYSTEMATIC NAME" ACDLabs 10.04 "1-(5-O-phosphono-beta-D-ribofuranosyl)-4-thioxo-3,4-dihydropyrimidin-2(1H)-one" 4SU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-(2-oxo-4-sulfanylidene-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4SU "Create component" 1999-07-08 RCSB 4SU "Modify descriptor" 2011-06-04 RCSB #