data_50T # _chem_comp.id 50T _chem_comp.name "ADENOSINE-5'-PHOSPHOVANADATE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N5 O11 P V" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-06-04 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 465.184 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 50T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4BRE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 50T C2 C2 C 0 1 Y N N 60.408 -7.832 10.406 -7.105 -0.241 -0.999 C2 50T 1 50T C4 C4 C 0 1 Y N N 61.350 -5.834 9.525 -4.917 -0.463 -0.332 C4 50T 2 50T C5 C5 C 0 1 Y N N 62.034 -6.554 8.577 -5.219 -1.728 0.199 C5 50T 3 50T C6 C6 C 0 1 Y N N 61.879 -8.028 8.598 -6.539 -2.197 0.087 C6 50T 4 50T C8 C8 C 0 1 Y N N 62.514 -4.441 8.264 -3.112 -1.362 0.562 C8 50T 5 50T N1 N1 N 0 1 Y N N 61.044 -8.602 9.503 -7.436 -1.424 -0.515 N1 50T 6 50T O3B O3B O 0 1 N N N 60.003 6.825 10.890 7.131 -1.398 0.198 O3B 50T 7 50T "O2'" "O2'" O 0 1 N N N 63.002 -3.453 11.787 -4.098 2.835 0.380 "O2'" 50T 8 50T O2B O2B O 0 1 N N N 62.585 5.896 10.700 5.708 -1.622 -1.969 O2B 50T 9 50T "O3'" "O3'" O 0 1 N N N 60.959 -1.621 12.391 -1.904 4.000 -0.391 "O3'" 50T 10 50T "C3'" "C3'" C 0 1 N N S 61.744 -1.447 11.154 -1.645 2.848 0.414 "C3'" 50T 11 50T "C4'" "C4'" C 0 1 N N R 60.706 -1.203 10.039 -0.698 1.879 -0.319 "C4'" 50T 12 50T "C5'" "C5'" C 0 1 N N N 61.270 -0.181 9.069 0.579 1.679 0.500 "C5'" 50T 13 50T "O5'" "O5'" O 0 1 N N N 61.351 1.090 9.713 1.498 0.873 -0.240 "O5'" 50T 14 50T PA PA P 0 1 N N N 62.264 2.335 9.394 2.950 0.461 0.320 PA 50T 15 50T O1A O1A O 0 1 N N N 63.670 1.815 9.284 3.698 1.681 0.697 O1A 50T 16 50T O2A O2A O 0 1 N N N 61.700 2.931 8.029 2.779 -0.484 1.612 O2A 50T 17 50T O3A O3A O 0 1 N N N 61.908 3.410 10.563 3.760 -0.333 -0.823 O3A 50T 18 50T O1B O1B O 0 1 N N N 60.517 4.650 12.526 4.718 -1.865 1.051 O1B 50T 19 50T O4B O4B O 0 1 N N N 59.844 4.452 9.477 5.911 0.890 -0.019 O4B 50T 20 50T "C2'" "C2'" C 0 1 N N R 62.387 -2.708 10.688 -2.942 2.029 0.620 "C2'" 50T 21 50T "O4'" "O4'" O 0 1 N N N 60.567 -2.440 9.316 -1.391 0.627 -0.457 "O4'" 50T 22 50T N9 N9 N 0 1 Y N N 61.647 -4.558 9.306 -3.582 -0.260 -0.088 N9 50T 23 50T N7 N7 N 0 1 Y N N 62.754 -5.689 7.827 -4.074 -2.222 0.730 N7 50T 24 50T N6 N6 N 0 1 N N N 62.600 -8.861 7.620 -6.896 -3.435 0.591 N6 50T 25 50T N3 N3 N 0 1 Y N N 60.546 -6.469 10.412 -5.882 0.239 -0.917 N3 50T 26 50T "C1'" "C1'" C 0 1 N N R 61.152 -3.438 10.139 -2.804 0.925 -0.459 "C1'" 50T 27 50T VB VB V 0 1 N N N 61.069 4.995 10.865 5.446 -0.866 -0.312 VB 50T 28 50T H2 H2 H 0 1 N N N 59.773 -8.300 11.144 -7.864 0.354 -1.485 H2 50T 29 50T H61N H61N H 0 0 N N N 62.362 -9.822 7.760 -6.232 -3.991 1.028 H61N 50T 30 50T H62N H62N H 0 0 N N N 62.343 -8.586 6.694 -7.810 -3.748 0.507 H62N 50T 31 50T H8 H8 H 0 1 N N N 62.928 -3.526 7.867 -2.093 -1.500 0.890 H8 50T 32 50T H3B H3B H 0 1 N N N 59.073 6.649 10.977 7.366 -1.148 1.103 H3B 50T 33 50T "H2'" "H2'" H 0 1 N N N 63.399 -4.247 11.449 -4.179 3.592 0.975 "H2'" 50T 34 50T HA HA H 0 1 N N N 63.108 -2.511 9.881 -2.973 1.595 1.620 HA 50T 35 50T "H3'" "H3'" H 0 1 N N N 61.547 -1.776 13.121 -2.494 4.644 0.022 "H3'" 50T 36 50T HB HB H 0 1 N N N 62.461 -0.616 11.225 -1.221 3.143 1.374 HB 50T 37 50T "H4'" "H4'" H 0 1 N N N 59.752 -0.859 10.465 -0.449 2.277 -1.303 "H4'" 50T 38 50T "H5'1" "H5'1" H 0 0 N N N 62.274 -0.495 8.748 1.032 2.648 0.708 "H5'1" 50T 39 50T "H5'2" "H5'2" H 0 0 N N N 60.612 -0.106 8.191 0.334 1.183 1.439 "H5'2" 50T 40 50T H1B H1B H 0 1 N N N 60.870 3.815 12.810 4.506 -2.775 0.801 H1B 50T 41 50T H4B H4B H 0 1 N N N 60.056 3.570 9.194 6.286 1.332 -0.793 H4B 50T 42 50T H2B H2B H 0 1 N N N 63.313 5.287 10.659 6.574 -2.040 -2.078 H2B 50T 43 50T "H1'" "H1'" H 0 1 N N N 60.491 -3.779 10.949 -3.118 1.299 -1.433 "H1'" 50T 44 50T HOA HOA H 0 1 N N N 62.363 2.857 7.353 2.297 -1.304 1.438 HOA 50T 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 50T C2 N1 SING Y N 1 50T C2 N3 DOUB Y N 2 50T C4 C5 DOUB Y N 3 50T C4 N9 SING Y N 4 50T C4 N3 SING Y N 5 50T C5 C6 SING Y N 6 50T C5 N7 SING Y N 7 50T C6 N1 DOUB Y N 8 50T C6 N6 SING N N 9 50T C8 N9 SING Y N 10 50T "C1'" N9 SING N N 11 50T C8 N7 DOUB Y N 12 50T O3B VB SING N N 13 50T "O2'" "C2'" SING N N 14 50T O2B VB SING N N 15 50T "O3'" "C3'" SING N N 16 50T "C3'" "C4'" SING N N 17 50T "C3'" "C2'" SING N N 18 50T "C4'" "C5'" SING N N 19 50T "C4'" "O4'" SING N N 20 50T "C5'" "O5'" SING N N 21 50T "O5'" PA SING N N 22 50T PA O1A DOUB N N 23 50T PA O2A SING N N 24 50T PA O3A SING N N 25 50T O3A VB SING N N 26 50T O1B VB SING N N 27 50T O4B VB SING N N 28 50T "C2'" "C1'" SING N N 29 50T "C1'" "O4'" SING N N 30 50T O2A HOA SING N N 31 50T C2 H2 SING N N 32 50T N6 H61N SING N N 33 50T N6 H62N SING N N 34 50T C8 H8 SING N N 35 50T O3B H3B SING N N 36 50T "O2'" "H2'" SING N N 37 50T "C2'" HA SING N N 38 50T "O3'" "H3'" SING N N 39 50T "C3'" HB SING N N 40 50T "C4'" "H4'" SING N N 41 50T "C5'" "H5'1" SING N N 42 50T "C5'" "H5'2" SING N N 43 50T O1B H1B SING N N 44 50T O2B H2B SING N N 45 50T O4B H4B SING N N 46 50T "C1'" "H1'" SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 50T SMILES ACDLabs 12.01 "O=P(O[V](O)(O)(O)O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" 50T InChI InChI 1.03 "InChI=1S/C10H14N5O7P.4H2O.V/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20;;;;;/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20);4*1H2;/q;;;;;+5/p-5/t4-,6-,7-,10-;;;;;/m1...../s1" 50T InChIKey InChI 1.03 GRUHEBDEJPYXQQ-AZGWGOJFSA-I 50T SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[V](O)(O)(O)O)[C@@H](O)[C@H]3O" 50T SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[V](O)(O)(O)O)[CH](O)[CH]3O" 50T SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[V](O)(O)(O)O)O)O)N" 50T SMILES "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O[V](O)(O)(O)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 50T "SYSTEMATIC NAME" ACDLabs 12.01 ;vanadium(5+) hydroxide 5'-O-[(R)-hydroxyphosphinato]adenosine (1:4:1) ; 50T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-tetrakis(oxidanyl)vanadium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 50T "Create component" 2013-06-04 EBI 50T "Other modification" 2013-06-19 EBI 50T "Initial release" 2013-07-17 RCSB 50T "Modify descriptor" 2014-09-05 RCSB #