data_52N # _chem_comp.id 52N _chem_comp.name "1,2-dioctanoyl phosphatidyl epi-inositol (3,4)-bisphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H49 O19 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-01-16 _chem_comp.pdbx_modified_date 2014-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 746.566 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 52N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CLM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 52N C1 C1 C 0 1 N N R 24.820 21.792 -43.414 -3.524 0.160 0.440 C1 52N 1 52N O1 O1 O 0 1 N N N 24.207 22.730 -42.511 -2.101 0.066 0.345 O1 52N 2 52N P1 P1 P 0 1 N N N 24.772 23.604 -41.283 -1.104 1.125 1.035 P1 52N 3 52N C2 C2 C 0 1 N N S 26.309 21.543 -43.205 -4.121 0.294 -0.962 C2 52N 4 52N O2 O2 O 0 1 N N N 26.990 22.344 -44.181 -3.607 1.472 -1.588 O2 52N 5 52N C3 C3 C 0 1 N N S 26.770 20.078 -43.307 -5.644 0.395 -0.860 C3 52N 6 52N O3 O3 O 0 1 N N N 28.099 20.066 -43.847 -5.995 1.540 -0.081 O3 52N 7 52N P3 P3 P 0 1 N N N 29.389 19.663 -42.947 -6.886 2.752 -0.655 P3 52N 8 52N C4 C4 C 0 1 N N R 25.895 19.062 -44.080 -6.195 -0.866 -0.190 C4 52N 9 52N O4 O4 O 0 1 N N N 26.384 18.845 -45.407 -7.617 -0.772 -0.094 O4 52N 10 52N P4 P4 P 0 1 N N N 26.368 17.408 -46.170 -8.614 -1.831 -0.785 P4 52N 11 52N C5 C5 C 0 1 N N R 24.378 19.325 -44.078 -5.597 -1.000 1.212 C5 52N 12 52N O5 O5 O 0 1 N N N 23.842 19.363 -45.406 -5.948 0.145 1.991 O5 52N 13 52N C6 C6 C 0 1 N N S 23.952 20.565 -43.276 -4.074 -1.100 1.110 C6 52N 14 52N O6 O6 O 0 1 N N N 22.651 20.993 -43.685 -3.516 -1.226 2.420 O6 52N 15 52N C7 C7 C 0 1 N N N 27.025 24.994 -41.222 1.523 1.609 0.981 C7 52N 16 52N C8 C8 C 0 1 N N R 27.136 26.506 -41.415 2.812 1.003 0.422 C8 52N 17 52N C9 C9 C 0 1 N N N 28.443 26.871 -40.741 3.984 1.945 0.707 C9 52N 18 52N C10 C10 C 0 1 N N N 29.741 28.772 -39.922 6.310 2.143 0.229 C10 52N 19 52N C11 C11 C 0 1 N N N 29.933 30.259 -39.737 7.596 1.669 -0.399 C11 52N 20 52N O11 O11 O 0 1 N N N 23.694 24.624 -40.980 -1.448 2.493 0.585 O11 52N 21 52N C12 C12 C 0 1 N N N 30.222 30.590 -38.279 8.717 2.657 -0.072 C12 52N 22 52N O12 O12 O 0 1 N N N 25.220 22.712 -40.168 -1.250 1.034 2.636 O12 52N 23 52N C13 C13 C 0 1 N N N 30.185 32.098 -38.025 10.023 2.176 -0.709 C13 52N 24 52N O13 O13 O 0 1 N N N 25.985 24.408 -41.982 0.413 0.788 0.614 O13 52N 25 52N C14 C14 C 0 1 N N N 29.424 32.413 -36.735 11.144 3.164 -0.382 C14 52N 26 52N O14 O14 O 0 1 N N N 27.235 26.846 -42.790 3.058 -0.281 1.054 O14 52N 27 52N C15 C15 C 0 1 N N N 29.449 33.903 -36.403 12.449 2.684 -1.020 C15 52N 28 52N O15 O15 O 0 1 N N N 28.508 28.258 -40.477 5.185 1.429 0.074 O15 52N 29 52N C16 C16 C 0 1 N N N 28.090 34.404 -35.924 13.571 3.672 -0.693 C16 52N 30 52N O16 O16 O 0 1 N N N 30.610 27.972 -39.620 6.293 3.166 0.872 O16 52N 31 52N C17 C17 C 0 1 N N N 27.818 33.999 -34.494 14.876 3.191 -1.330 C17 52N 32 52N O17 O17 O 0 1 N N N 25.418 28.320 -42.797 4.064 -0.946 -0.798 O17 52N 33 52N C18 C18 C 0 1 N N N 26.429 27.923 -43.349 3.710 -1.202 0.329 C18 52N 34 52N C19 C19 C 0 1 N N N 26.863 28.507 -44.675 4.001 -2.558 0.919 C19 52N 35 52N C20 C20 C 0 1 N N N 26.834 30.037 -44.700 4.748 -3.412 -0.108 C20 52N 36 52N C21 C21 C 0 1 N N N 27.598 30.710 -43.552 5.044 -4.788 0.492 C21 52N 37 52N C22 C22 C 0 1 N N N 29.110 30.613 -43.700 5.791 -5.642 -0.535 C22 52N 38 52N C23 C23 C 0 1 N N N 29.779 31.976 -43.866 6.086 -7.018 0.064 C23 52N 39 52N C24 C24 C 0 1 N N N 30.551 32.428 -42.629 6.833 -7.872 -0.962 C24 52N 40 52N C25 C25 C 0 1 N N N 31.958 31.873 -42.625 7.128 -9.248 -0.363 C25 52N 41 52N O31 O31 O 0 1 N N N 29.307 18.145 -42.836 -7.192 3.801 0.528 O31 52N 42 52N O32 O32 O 0 1 N N N 29.273 20.370 -41.616 -6.085 3.495 -1.837 O32 52N 43 52N O33 O33 O 0 1 N N N 30.513 20.188 -43.813 -8.162 2.218 -1.183 O33 52N 44 52N O41 O41 O 0 1 N N N 25.439 16.461 -45.428 -8.469 -1.740 -2.386 O41 52N 45 52N O42 O42 O 0 1 N N N 25.832 17.740 -47.543 -8.270 -3.198 -0.335 O42 52N 46 52N O43 O43 O 0 1 N N N 27.840 17.045 -46.113 -10.131 -1.493 -0.364 O43 52N 47 52N H1 H1 H 0 1 N N N 24.694 22.169 -44.440 -3.791 1.034 1.034 H1 52N 48 52N H2 H2 H 0 1 N N N 26.572 21.905 -42.200 -3.854 -0.579 -1.556 H2 52N 49 52N HO2 HO2 H 0 1 N N N 27.928 22.223 -44.092 -2.645 1.477 -1.686 HO2 52N 50 52N H3 H3 H 0 1 N N N 26.831 19.704 -42.274 -6.070 0.491 -1.859 H3 52N 51 52N H4 H4 H 0 1 N N N 26.022 18.110 -43.544 -5.927 -1.739 -0.784 H4 52N 52 52N H5 H5 H 0 1 N N N 23.922 18.463 -43.568 -5.990 -1.898 1.690 H5 52N 53 52N HO5 HO5 H 0 1 N N N 22.907 19.527 -45.366 -5.602 0.128 2.894 HO5 52N 54 52N H6 H6 H 0 1 N N N 23.923 20.284 -42.213 -3.807 -1.974 0.516 H6 52N 55 52N HO6 HO6 H 0 1 N N N 22.044 20.265 -43.624 -3.822 -2.005 2.904 HO6 52N 56 52N H7 H7 H 0 1 N N N 26.837 24.791 -40.157 1.590 1.665 2.067 H7 52N 57 52N H7A H7A H 0 1 N N N 27.978 24.533 -41.520 1.385 2.610 0.573 H7A 52N 58 52N H8 H8 H 0 1 N N N 26.294 27.017 -40.925 2.711 0.864 -0.655 H8 52N 59 52N H9 H9 H 0 1 N N N 28.524 26.320 -39.792 3.760 2.934 0.308 H9 52N 60 52N H9A H9A H 0 1 N N N 29.278 26.591 -41.400 4.141 2.014 1.783 H9A 52N 61 52N H11 H11 H 0 1 N N N 30.778 30.593 -40.357 7.852 0.686 -0.004 H11 52N 62 52N H11A H11A H 0 0 N N N 29.018 30.783 -40.051 7.471 1.606 -1.480 H11A 52N 63 52N H12 H12 H 0 1 N N N 29.466 30.103 -37.646 8.462 3.641 -0.466 H12 52N 64 52N H12A H12A H 0 0 N N N 31.220 30.209 -38.018 8.843 2.720 1.009 H12A 52N 65 52N HO12 HO12 H 0 0 N N N 24.736 22.924 -39.379 -1.039 0.164 3.001 HO12 52N 66 52N H13 H13 H 0 1 N N N 31.215 32.474 -37.937 10.278 1.193 -0.315 H13 52N 67 52N H13A H13A H 0 0 N N N 29.684 32.594 -38.870 9.898 2.113 -1.790 H13A 52N 68 52N H14 H14 H 0 1 N N N 28.378 32.093 -36.853 10.888 4.148 -0.776 H14 52N 69 52N H14A H14A H 0 0 N N N 29.886 31.857 -35.906 11.269 3.227 0.699 H14A 52N 70 52N H15 H15 H 0 1 N N N 30.192 34.078 -35.611 12.705 1.700 -0.626 H15 52N 71 52N H15A H15A H 0 0 N N N 29.736 34.463 -37.305 12.324 2.621 -2.101 H15A 52N 72 52N H16 H16 H 0 1 N N N 28.070 35.502 -35.994 13.315 4.655 -1.087 H16 52N 73 52N H16A H16A H 0 0 N N N 27.306 33.981 -36.570 13.696 3.735 0.388 H16A 52N 74 52N H17 H17 H 0 1 N N N 26.832 34.378 -34.186 14.751 3.128 -2.411 H17 52N 75 52N H17A H17A H 0 0 N N N 27.830 32.902 -34.415 15.675 3.895 -1.097 H17A 52N 76 52N H17B H17B H 0 0 N N N 28.594 34.422 -33.839 15.132 2.207 -0.936 H17B 52N 77 52N H19 H19 H 0 1 N N N 27.890 28.174 -44.884 4.616 -2.442 1.811 H19 52N 78 52N H19A H19A H 0 0 N N N 26.189 28.132 -45.459 3.064 -3.047 1.185 H19A 52N 79 52N H20 H20 H 0 1 N N N 27.276 30.373 -45.650 4.133 -3.529 -1.000 H20 52N 80 52N H20A H20A H 0 0 N N N 25.784 30.361 -44.650 5.685 -2.923 -0.374 H20A 52N 81 52N H21 H21 H 0 1 N N N 27.317 31.773 -43.521 5.659 -4.672 1.384 H21 52N 82 52N H21A H21A H 0 0 N N N 27.307 30.226 -42.608 4.107 -5.277 0.758 H21A 52N 83 52N H22 H22 H 0 1 N N N 29.520 30.128 -42.802 5.175 -5.759 -1.427 H22 52N 84 52N H22A H22A H 0 0 N N N 29.338 30.000 -44.585 6.728 -5.153 -0.801 H22A 52N 85 52N H23 H23 H 0 1 N N N 30.479 31.920 -44.713 6.701 -6.902 0.956 H23 52N 86 52N H23A H23A H 0 0 N N N 29.001 32.722 -44.083 5.149 -7.507 0.331 H23A 52N 87 52N H24 H24 H 0 1 N N N 30.599 33.527 -42.619 6.218 -7.989 -1.855 H24 52N 88 52N H24A H24A H 0 0 N N N 30.024 32.076 -41.730 7.770 -7.383 -1.229 H24A 52N 89 52N H25 H25 H 0 1 N N N 32.486 32.217 -41.723 6.191 -9.737 -0.097 H25 52N 90 52N H25A H25A H 0 0 N N N 31.918 30.774 -42.630 7.661 -9.856 -1.095 H25A 52N 91 52N H25B H25B H 0 0 N N N 32.493 32.225 -43.519 7.744 -9.132 0.529 H25B 52N 92 52N HO31 HO31 H 0 0 N N N 30.003 17.751 -43.349 -7.726 4.558 0.253 HO31 52N 93 52N HO32 HO32 H 0 0 N N N 29.944 21.039 -41.553 -5.237 3.870 -1.562 HO32 52N 94 52N HO41 HO41 H 0 0 N N N 24.690 16.257 -45.976 -8.679 -0.870 -2.751 HO41 52N 95 52N HO43 HO43 H 0 0 N N N 28.211 17.085 -46.987 -10.788 -2.093 -0.744 HO43 52N 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 52N C1 C6 SING N N 1 52N C1 C2 SING N N 2 52N C1 O1 SING N N 3 52N C1 H1 SING N N 4 52N O1 P1 SING N N 5 52N O13 P1 SING N N 6 52N P1 O11 DOUB N N 7 52N P1 O12 SING N N 8 52N O2 C2 SING N N 9 52N C3 C2 SING N N 10 52N C2 H2 SING N N 11 52N O2 HO2 SING N N 12 52N C4 C3 SING N N 13 52N O3 C3 SING N N 14 52N C3 H3 SING N N 15 52N O3 P3 SING N N 16 52N O33 P3 DOUB N N 17 52N P3 O31 SING N N 18 52N P3 O32 SING N N 19 52N O4 C4 SING N N 20 52N C4 C5 SING N N 21 52N C4 H4 SING N N 22 52N P4 O4 SING N N 23 52N O42 P4 DOUB N N 24 52N P4 O43 SING N N 25 52N P4 O41 SING N N 26 52N O5 C5 SING N N 27 52N C5 C6 SING N N 28 52N C5 H5 SING N N 29 52N O5 HO5 SING N N 30 52N O6 C6 SING N N 31 52N C6 H6 SING N N 32 52N O6 HO6 SING N N 33 52N O13 C7 SING N N 34 52N C8 C7 SING N N 35 52N C7 H7 SING N N 36 52N C7 H7A SING N N 37 52N O14 C8 SING N N 38 52N C8 C9 SING N N 39 52N C8 H8 SING N N 40 52N C9 O15 SING N N 41 52N C9 H9 SING N N 42 52N C9 H9A SING N N 43 52N O15 C10 SING N N 44 52N C10 C11 SING N N 45 52N C10 O16 DOUB N N 46 52N C11 C12 SING N N 47 52N C11 H11 SING N N 48 52N C11 H11A SING N N 49 52N C12 C13 SING N N 50 52N C12 H12 SING N N 51 52N C12 H12A SING N N 52 52N O12 HO12 SING N N 53 52N C13 C14 SING N N 54 52N C13 H13 SING N N 55 52N C13 H13A SING N N 56 52N C14 C15 SING N N 57 52N C14 H14 SING N N 58 52N C14 H14A SING N N 59 52N C18 O14 SING N N 60 52N C15 C16 SING N N 61 52N C15 H15 SING N N 62 52N C15 H15A SING N N 63 52N C16 C17 SING N N 64 52N C16 H16 SING N N 65 52N C16 H16A SING N N 66 52N C17 H17 SING N N 67 52N C17 H17A SING N N 68 52N C17 H17B SING N N 69 52N C18 O17 DOUB N N 70 52N C19 C18 SING N N 71 52N C20 C19 SING N N 72 52N C19 H19 SING N N 73 52N C19 H19A SING N N 74 52N C20 C21 SING N N 75 52N C20 H20 SING N N 76 52N C20 H20A SING N N 77 52N C22 C21 SING N N 78 52N C21 H21 SING N N 79 52N C21 H21A SING N N 80 52N C23 C22 SING N N 81 52N C22 H22 SING N N 82 52N C22 H22A SING N N 83 52N C23 C24 SING N N 84 52N C23 H23 SING N N 85 52N C23 H23A SING N N 86 52N C24 C25 SING N N 87 52N C24 H24 SING N N 88 52N C24 H24A SING N N 89 52N C25 H25 SING N N 90 52N C25 H25A SING N N 91 52N C25 H25B SING N N 92 52N O31 HO31 SING N N 93 52N O32 HO32 SING N N 94 52N O41 HO41 SING N N 95 52N O43 HO43 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 52N SMILES ACDLabs 12.01 "O=C(OCC(OC(=O)CCCCCCC)COP(=O)(O)OC1C(O)C(O)C(OP(=O)(O)O)C(OP(=O)(O)O)C1O)CCCCCCC" 52N InChI InChI 1.03 ;InChI=1S/C25H49O19P3/c1-3-5-7-9-11-13-18(26)39-15-17(41-19(27)14-12-10-8-6-4-2)16-40-47(37,38)44-23-20(28)21(29)24(42-45(31,32)33)25(22(23)30)43-46(34,35)36/h17,20-25,28-30H,3-16H2,1-2H3,(H,37,38)(H2,31,32,33)(H2,34,35,36)/t17-,20+,21-,22+,23-,24-,25+/m1/s1 ; 52N InChIKey InChI 1.03 XLNCEHRXXWQMPK-KWIFDMFUSA-N 52N SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[C@@H]1[C@@H](O)[C@@H](O)[C@@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]1O)OC(=O)CCCCCCC" 52N SMILES CACTVS 3.385 "CCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O)OC(=O)CCCCCCC" 52N SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCCCC(=O)OC[C@H](COP(=O)(O)O[C@@H]1[C@H]([C@H]([C@H]([C@H]([C@H]1O)OP(=O)(O)O)OP(=O)(O)O)O)O)OC(=O)CCCCCCC" 52N SMILES "OpenEye OEToolkits" 1.7.6 "CCCCCCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)OP(=O)(O)O)OP(=O)(O)O)O)O)OC(=O)CCCCCCC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 52N "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-3-{[(S)-hydroxy{[(1R,2S,3R,4R,5S,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate" 52N "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2S,3R,4R,5S,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 52N "Create component" 2014-01-16 EBI 52N "Initial release" 2014-04-16 RCSB #