data_59N # _chem_comp.id 59N _chem_comp.name "8-[(trans-4-aminocyclohexyl)methyl]-6-[2-chloro-4-(6-methylpyrazin-2-yl)phenyl]-2-(ethylamino)pyrido[2,3-d]pyrimidin-7(8H)-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H30 Cl N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-08-27 _chem_comp.pdbx_modified_date 2016-09-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.026 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 59N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DEW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 59N N3 N1 N 0 1 N N N 10.225 -11.750 -20.864 5.583 2.554 -0.034 N3 59N 1 59N C4 C1 C 0 1 Y N N 9.060 -11.494 -20.182 4.218 2.382 0.078 C4 59N 2 59N C6 C2 C 0 1 Y N N 7.970 -11.311 -18.161 2.343 1.150 -0.444 C6 59N 3 59N C8 C3 C 0 1 N N N 6.842 -11.160 -16.103 0.421 -0.114 -0.981 C8 59N 4 59N C10 C4 C 0 1 N N N 5.601 -10.788 -16.786 -0.414 0.811 -0.211 C10 59N 5 59N C13 C5 C 0 1 Y N N 6.832 -10.932 -20.258 2.212 3.135 0.934 C13 59N 6 59N C15 C6 C 0 1 Y N N 4.419 -10.449 -15.938 -1.875 0.593 -0.113 C15 59N 7 59N C17 C7 C 0 1 Y N N 2.659 -11.040 -14.402 -3.737 -0.623 0.799 C17 59N 8 59N C20 C8 C 0 1 Y N N 4.022 -9.108 -15.857 -2.752 1.396 -0.844 C20 59N 9 59N C21 C9 C 0 1 Y N N 1.106 -9.312 -13.462 -6.076 -0.028 0.174 C21 59N 10 59N C24 C10 C 0 1 Y N N -0.942 -8.570 -11.859 -8.710 -0.459 0.390 C24 59N 11 59N C26 C11 C 0 1 Y N N 0.405 -8.121 -13.675 -6.585 -0.968 1.071 C26 59N 12 59N C1 C12 C 0 1 N N N 12.163 -10.530 -20.071 7.738 3.646 0.347 C1 59N 13 59N C2 C13 C 0 1 N N N 11.494 -11.903 -20.150 6.235 3.688 0.627 C2 59N 14 59N N5 N2 N 0 1 Y N N 9.070 -11.565 -18.857 3.654 1.350 -0.529 N5 59N 15 59N N7 N3 N 0 1 N N N 7.976 -11.380 -16.789 1.750 0.083 -1.070 N7 59N 16 59N O9 O1 O 0 1 N N N 6.847 -11.247 -14.885 -0.089 -1.067 -1.543 O9 59N 17 59N C11 C14 C 0 1 N N N 5.584 -10.710 -18.148 0.168 1.882 0.413 C11 59N 18 59N C12 C15 C 0 1 Y N N 6.783 -10.994 -18.859 1.566 2.060 0.306 C12 59N 19 59N N14 N4 N 0 1 Y N N 7.969 -11.190 -20.879 3.519 3.256 0.796 N14 59N 20 59N C16 C16 C 0 1 Y N N 3.730 -11.418 -15.195 -2.377 -0.421 0.708 C16 59N 21 59N C18 C17 C 0 1 Y N N 2.252 -9.704 -14.337 -4.612 0.185 0.071 C18 59N 22 59N C19 C18 C 0 1 Y N N 2.949 -8.734 -15.063 -4.111 1.193 -0.753 C19 59N 23 59N N22 N5 N 0 1 Y N N 0.764 -10.091 -12.432 -6.907 0.672 -0.592 N22 59N 24 59N C23 C19 C 0 1 Y N N -0.242 -9.743 -11.637 -8.209 0.475 -0.501 C23 59N 25 59N N25 N6 N 0 1 Y N N -0.601 -7.789 -12.872 -7.888 -1.158 1.154 N25 59N 26 59N C27 C20 C 0 1 N N N -0.631 -10.624 -10.482 -9.153 1.267 -1.369 C27 59N 27 59N CL1 CL1 CL 0 0 N N N 4.202 -13.089 -15.259 -1.288 -1.425 1.612 CL28 59N 28 59N C29 C21 C 0 1 N N N 9.214 -11.740 -16.076 2.572 -0.851 -1.844 C29 59N 29 59N C30 C22 C 0 1 N N N 10.217 -10.562 -15.988 3.056 -1.980 -0.932 C30 59N 30 59N C32 C23 C 0 1 N N N 9.512 -9.203 -15.848 3.809 -3.020 -1.764 C32 59N 31 59N C33 C24 C 0 1 N N N 10.506 -8.049 -15.645 4.294 -4.149 -0.852 C33 59N 32 59N C34 C25 C 0 1 N N N 11.406 -8.343 -14.452 5.228 -3.576 0.216 C34 59N 33 59N C36 C26 C 0 1 N N N 12.190 -9.616 -14.754 4.476 -2.536 1.048 C36 59N 34 59N C37 C27 C 0 1 N N N 11.178 -10.768 -14.806 3.991 -1.407 0.136 C37 59N 35 59N N38 N7 N 0 1 N N N 12.300 -7.213 -14.174 5.694 -4.660 1.091 N38 59N 36 59N H1 H1 H 0 1 N N N 10.078 -12.600 -21.370 6.111 1.923 -0.546 H1 59N 37 59N H2 H2 H 0 1 N N N 5.948 -10.676 -20.823 1.651 3.852 1.516 H2 59N 38 59N H3 H3 H 0 1 N N N 2.132 -11.787 -13.827 -4.126 -1.403 1.436 H3 59N 39 59N H4 H4 H 0 1 N N N 4.558 -8.357 -16.419 -2.364 2.176 -1.482 H4 59N 40 59N H5 H5 H 0 1 N N N -1.760 -8.294 -11.211 -9.776 -0.617 0.462 H5 59N 41 59N H6 H6 H 0 1 N N N 0.681 -7.471 -14.492 -5.914 -1.540 1.695 H6 59N 42 59N H7 H7 H 0 1 N N N 13.121 -10.618 -19.538 8.154 2.714 0.730 H7 59N 43 59N H8 H8 H 0 1 N N N 12.343 -10.151 -21.088 7.909 3.705 -0.728 H8 59N 44 59N H9 H9 H 0 1 N N N 11.506 -9.833 -19.531 8.223 4.489 0.838 H9 59N 45 59N H10 H10 H 0 1 N N N 11.307 -12.286 -19.136 5.819 4.620 0.244 H10 59N 46 59N H11 H11 H 0 1 N N N 12.145 -12.604 -20.693 6.064 3.629 1.702 H11 59N 47 59N H12 H12 H 0 1 N N N 4.681 -10.439 -18.674 -0.430 2.575 0.985 H12 59N 48 59N H13 H13 H 0 1 N N N 2.653 -7.697 -15.006 -4.789 1.815 -1.319 H13 59N 49 59N H14 H14 H 0 1 N N N 0.026 -11.506 -10.455 -9.439 2.183 -0.852 H14 59N 50 59N H15 H15 H 0 1 N N N -0.529 -10.062 -9.542 -8.658 1.519 -2.307 H15 59N 51 59N H16 H16 H 0 1 N N N -1.675 -10.948 -10.604 -10.043 0.673 -1.575 H16 59N 52 59N H17 H17 H 0 1 N N N 8.953 -12.057 -15.056 1.978 -1.270 -2.656 H17 59N 53 59N H18 H18 H 0 1 N N N 9.696 -12.574 -16.607 3.431 -0.323 -2.256 H18 59N 54 59N H19 H19 H 0 1 N N N 10.809 -10.548 -16.915 2.200 -2.451 -0.450 H19 59N 55 59N H20 H20 H 0 1 N N N 8.929 -9.011 -16.761 3.143 -3.428 -2.524 H20 59N 56 59N H21 H21 H 0 1 N N N 8.835 -9.243 -14.982 4.666 -2.549 -2.246 H21 59N 57 59N H22 H22 H 0 1 N N N 11.123 -7.936 -16.548 3.437 -4.620 -0.370 H22 59N 58 59N H23 H23 H 0 1 N N N 9.951 -7.117 -15.462 4.830 -4.890 -1.445 H23 59N 59 59N H24 H24 H 0 1 N N N 10.771 -8.526 -13.573 6.085 -3.105 -0.266 H24 59N 60 59N H25 H25 H 0 1 N N N 12.931 -9.800 -13.962 3.619 -3.007 1.530 H25 59N 61 59N H26 H26 H 0 1 N N N 12.704 -9.522 -15.722 5.142 -2.128 1.808 H26 59N 62 59N H27 H27 H 0 1 N N N 10.604 -10.793 -13.868 4.848 -0.936 -0.346 H27 59N 63 59N H28 H28 H 0 1 N N N 11.714 -11.720 -14.933 3.455 -0.666 0.729 H28 59N 64 59N H29 H29 H 0 1 N N N 12.879 -7.431 -13.388 6.313 -4.308 1.805 H29 59N 65 59N H31 H31 H 0 1 N N N 12.875 -7.039 -14.973 4.915 -5.155 1.500 H31 59N 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 59N N14 C13 DOUB Y N 1 59N N14 C4 SING Y N 2 59N N3 C4 SING N N 3 59N N3 C2 SING N N 4 59N C13 C12 SING Y N 5 59N C4 N5 DOUB Y N 6 59N C2 C1 SING N N 7 59N C12 C6 DOUB Y N 8 59N C12 C11 SING N N 9 59N N5 C6 SING Y N 10 59N C6 N7 SING N N 11 59N C11 C10 DOUB N N 12 59N N7 C8 SING N N 13 59N N7 C29 SING N N 14 59N C10 C8 SING N N 15 59N C10 C15 SING N N 16 59N C8 O9 DOUB N N 17 59N C29 C30 SING N N 18 59N C30 C32 SING N N 19 59N C30 C37 SING N N 20 59N C15 C20 DOUB Y N 21 59N C15 C16 SING Y N 22 59N C20 C19 SING Y N 23 59N C32 C33 SING N N 24 59N C33 C34 SING N N 25 59N CL1 C16 SING N N 26 59N C16 C17 DOUB Y N 27 59N C19 C18 DOUB Y N 28 59N C37 C36 SING N N 29 59N C36 C34 SING N N 30 59N C34 N38 SING N N 31 59N C17 C18 SING Y N 32 59N C18 C21 SING N N 33 59N C26 C21 DOUB Y N 34 59N C26 N25 SING Y N 35 59N C21 N22 SING Y N 36 59N N25 C24 DOUB Y N 37 59N N22 C23 DOUB Y N 38 59N C24 C23 SING Y N 39 59N C23 C27 SING N N 40 59N N3 H1 SING N N 41 59N C13 H2 SING N N 42 59N C17 H3 SING N N 43 59N C20 H4 SING N N 44 59N C24 H5 SING N N 45 59N C26 H6 SING N N 46 59N C1 H7 SING N N 47 59N C1 H8 SING N N 48 59N C1 H9 SING N N 49 59N C2 H10 SING N N 50 59N C2 H11 SING N N 51 59N C11 H12 SING N N 52 59N C19 H13 SING N N 53 59N C27 H14 SING N N 54 59N C27 H15 SING N N 55 59N C27 H16 SING N N 56 59N C29 H17 SING N N 57 59N C29 H18 SING N N 58 59N C30 H19 SING N N 59 59N C32 H20 SING N N 60 59N C32 H21 SING N N 61 59N C33 H22 SING N N 62 59N C33 H23 SING N N 63 59N C34 H24 SING N N 64 59N C36 H25 SING N N 65 59N C36 H26 SING N N 66 59N C37 H27 SING N N 67 59N C37 H28 SING N N 68 59N N38 H29 SING N N 69 59N N38 H31 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 59N SMILES ACDLabs 12.01 "N(c4nc3N(C(=O)C(c1ccc(cc1Cl)c2nc(cnc2)C)=Cc3cn4)CC5CCC(N)CC5)CC" 59N InChI InChI 1.03 "InChI=1S/C27H30ClN7O/c1-3-31-27-32-13-19-10-22(21-9-6-18(11-23(21)28)24-14-30-12-16(2)33-24)26(36)35(25(19)34-27)15-17-4-7-20(29)8-5-17/h6,9-14,17,20H,3-5,7-8,15,29H2,1-2H3,(H,31,32,34)/t17-,20-" 59N InChIKey InChI 1.03 PJYRMGKJLXENCU-IRJFHVNHSA-N 59N SMILES_CANONICAL CACTVS 3.385 "CCNc1ncc2C=C(C(=O)N(C[C@H]3CC[C@H](N)CC3)c2n1)c4ccc(cc4Cl)c5cncc(C)n5" 59N SMILES CACTVS 3.385 "CCNc1ncc2C=C(C(=O)N(C[CH]3CC[CH](N)CC3)c2n1)c4ccc(cc4Cl)c5cncc(C)n5" 59N SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCNc1ncc2c(n1)N(C(=O)C(=C2)c3ccc(cc3Cl)c4cncc(n4)C)CC5CCC(CC5)N" 59N SMILES "OpenEye OEToolkits" 1.9.2 "CCNc1ncc2c(n1)N(C(=O)C(=C2)c3ccc(cc3Cl)c4cncc(n4)C)CC5CCC(CC5)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 59N "SYSTEMATIC NAME" ACDLabs 12.01 "8-[(trans-4-aminocyclohexyl)methyl]-6-[2-chloro-4-(6-methylpyrazin-2-yl)phenyl]-2-(ethylamino)pyrido[2,3-d]pyrimidin-7(8H)-one" 59N "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "8-[(4-azanylcyclohexyl)methyl]-6-[2-chloranyl-4-(6-methylpyrazin-2-yl)phenyl]-2-(ethylamino)pyrido[2,3-d]pyrimidin-7-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 59N "Create component" 2015-08-27 RCSB 59N "Initial release" 2016-09-21 RCSB #