data_5D3 # _chem_comp.id 5D3 _chem_comp.name "10-(4-ethylphenyl)sulfonyl-~{N}-(thiophen-2-ylmethyl)-5-thia-1,8,11,12-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-2(6),3,7,9,11-pentaen-7-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H17 N5 O2 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-08 _chem_comp.pdbx_modified_date 2023-09-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 455.576 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5D3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P2A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5D3 CAA C1 C 0 1 Y N N 117.390 138.232 112.988 -3.333 -0.435 -0.529 CAA 5D3 1 5D3 CAB C2 C 0 1 Y N N 117.881 138.930 114.082 -4.614 -0.034 -0.197 CAB 5D3 2 5D3 CAC C3 C 0 1 Y N N 119.033 139.691 113.971 -5.318 -0.709 0.783 CAC 5D3 3 5D3 CAD C4 C 0 1 Y N N 119.706 139.750 112.760 -4.741 -1.785 1.431 CAD 5D3 4 5D3 CAE C5 C 0 1 Y N N 119.217 139.049 111.664 -3.460 -2.186 1.099 CAE 5D3 5 5D3 CAF C6 C 0 1 Y N N 118.062 138.282 111.775 -2.756 -1.511 0.120 CAF 5D3 6 5D3 CAG C7 C 0 1 N N N 120.863 140.512 112.638 -5.507 -2.520 2.500 CAG 5D3 7 5D3 CAH C8 C 0 1 N N N 121.461 140.794 114.019 -6.306 -3.659 1.863 CAH 5D3 8 5D3 CAK C9 C 0 1 Y N N 114.705 137.752 112.065 -1.547 1.719 -0.994 CAK 5D3 9 5D3 CAM C10 C 0 1 Y N N 113.688 138.539 112.335 -0.265 1.625 -0.481 CAM 5D3 10 5D3 CAR C11 C 0 1 Y N N 112.115 139.859 113.346 1.806 0.796 0.137 CAR 5D3 11 5D3 CAS C12 C 0 1 Y N N 111.455 139.989 112.198 2.167 2.055 0.681 CAS 5D3 12 5D3 CAT C13 C 0 1 Y N N 111.891 139.361 111.094 1.265 3.103 0.626 CAT 5D3 13 5D3 CAV C14 C 0 1 Y N N 110.038 140.336 110.235 2.987 4.205 1.695 CAV 5D3 14 5D3 CAW C15 C 0 1 Y N N 111.104 139.560 110.021 1.756 4.275 1.198 CAW 5D3 15 5D3 CAY C16 C 0 1 N N N 112.425 140.544 115.638 2.336 -1.559 -0.373 CAY 5D3 16 5D3 CAZ C17 C 0 1 Y N N 111.870 139.601 116.689 3.479 -2.525 -0.191 CAZ 5D3 17 5D3 CBA C18 C 0 1 Y N N 111.587 139.936 117.946 3.655 -3.318 0.867 CBA 5D3 18 5D3 CBB C19 C 0 1 Y N N 111.121 138.908 118.672 4.780 -4.122 0.813 CBB 5D3 19 5D3 CBC C20 C 0 1 Y N N 111.043 137.767 117.986 5.518 -3.983 -0.290 CBC 5D3 20 5D3 NAN N1 N 0 1 Y N N 113.009 138.650 111.208 0.029 2.859 0.028 NAN 5D3 21 5D3 NAO N2 N 0 1 Y N N 113.596 137.990 110.321 -1.094 3.663 -0.197 NAO 5D3 22 5D3 NAP N3 N 0 1 Y N N 114.643 137.451 110.778 -1.988 2.955 -0.796 NAP 5D3 23 5D3 NAQ N4 N 0 1 Y N N 113.260 139.176 113.425 0.625 0.622 -0.417 NAQ 5D3 24 5D3 NAX N5 N 0 1 N N N 111.661 140.540 114.387 2.703 -0.257 0.188 NAX 5D3 25 5D3 OAJ O1 O 0 1 N N N 116.279 135.828 113.021 -1.467 -0.492 -2.276 OAJ 5D3 26 5D3 OAL O2 O 0 1 N N N 115.418 137.519 114.617 -3.409 1.046 -2.612 OAL 5D3 27 5D3 SAI S1 S 0 1 N N N 115.946 137.303 113.204 -2.439 0.420 -1.783 SAI 5D3 28 5D3 SAU S2 S 0 1 Y N N 110.096 140.778 111.815 3.644 2.592 1.471 SAU 5D3 29 5D3 SBD S3 S 0 1 Y N N 111.569 138.087 116.448 4.782 -2.783 -1.344 SBD 5D3 30 5D3 H1 H1 H 0 1 N N N 117.361 138.880 115.027 -5.065 0.806 -0.704 H1 5D3 31 5D3 H2 H2 H 0 1 N N N 119.406 140.237 114.825 -6.318 -0.395 1.042 H2 5D3 32 5D3 H3 H3 H 0 1 N N N 119.738 139.100 110.719 -3.009 -3.026 1.606 H3 5D3 33 5D3 H4 H4 H 0 1 N N N 117.691 137.730 110.924 -1.755 -1.824 -0.139 H4 5D3 34 5D3 H11 H11 H 0 1 N N N 109.287 140.617 109.512 3.508 5.024 2.169 H11 5D3 35 5D3 H13 H13 H 0 1 N N N 111.319 139.124 109.057 1.173 5.183 1.234 H13 5D3 36 5D3 H14 H14 H 0 1 N N N 112.417 141.565 116.047 2.119 -1.450 -1.436 H14 5D3 37 5D3 H15 H15 H 0 1 N N N 113.460 140.246 115.415 1.454 -1.941 0.141 H15 5D3 38 5D3 H17 H17 H 0 1 N N N 111.719 140.933 118.341 2.971 -3.331 1.703 H17 5D3 39 5D3 H18 H18 H 0 1 N N N 110.837 138.996 119.710 5.041 -4.811 1.603 H18 5D3 40 5D3 H20 H20 H 0 1 N N N 110.701 136.814 118.362 6.427 -4.525 -0.503 H20 5D3 41 5D3 H22 H22 H 0 1 N N N 111.575 141.493 114.096 3.575 -0.132 0.595 H22 5D3 42 5D3 H5 H5 H 0 1 N N N 121.597 139.963 112.030 -4.810 -2.929 3.231 H5 5D3 43 5D3 H6 H6 H 0 1 N N N 120.620 141.465 112.146 -6.191 -1.830 2.996 H6 5D3 44 5D3 H7 H7 H 0 1 N N N 122.374 141.397 113.907 -5.622 -4.348 1.367 H7 5D3 45 5D3 H8 H8 H 0 1 N N N 120.730 141.345 114.629 -6.860 -4.191 2.637 H8 5D3 46 5D3 H9 H9 H 0 1 N N N 121.708 139.843 114.513 -7.003 -3.250 1.132 H9 5D3 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5D3 CAA CAB DOUB Y N 1 5D3 CAA CAF SING Y N 2 5D3 CAA SAI SING N N 3 5D3 CAB CAC SING Y N 4 5D3 CAC CAD DOUB Y N 5 5D3 CAD CAE SING Y N 6 5D3 CAD CAG SING N N 7 5D3 CAE CAF DOUB Y N 8 5D3 CAG CAH SING N N 9 5D3 CAK CAM DOUB Y N 10 5D3 CAK NAP SING Y N 11 5D3 CAK SAI SING N N 12 5D3 CAM NAN SING Y N 13 5D3 CAM NAQ SING Y N 14 5D3 CAR CAS SING Y N 15 5D3 CAR NAQ DOUB Y N 16 5D3 CAR NAX SING N N 17 5D3 CAS CAT DOUB Y N 18 5D3 CAS SAU SING Y N 19 5D3 CAT CAW SING Y N 20 5D3 CAT NAN SING Y N 21 5D3 CAV CAW DOUB Y N 22 5D3 CAV SAU SING Y N 23 5D3 CAY CAZ SING N N 24 5D3 CAY NAX SING N N 25 5D3 CAZ CBA DOUB Y N 26 5D3 CAZ SBD SING Y N 27 5D3 CBA CBB SING Y N 28 5D3 CBB CBC DOUB Y N 29 5D3 CBC SBD SING Y N 30 5D3 NAN NAO SING Y N 31 5D3 NAO NAP DOUB Y N 32 5D3 OAJ SAI DOUB N N 33 5D3 OAL SAI DOUB N N 34 5D3 CAB H1 SING N N 35 5D3 CAC H2 SING N N 36 5D3 CAE H3 SING N N 37 5D3 CAF H4 SING N N 38 5D3 CAV H11 SING N N 39 5D3 CAW H13 SING N N 40 5D3 CAY H14 SING N N 41 5D3 CAY H15 SING N N 42 5D3 CBA H17 SING N N 43 5D3 CBB H18 SING N N 44 5D3 CBC H20 SING N N 45 5D3 NAX H22 SING N N 46 5D3 CAG H5 SING N N 47 5D3 CAG H6 SING N N 48 5D3 CAH H7 SING N N 49 5D3 CAH H8 SING N N 50 5D3 CAH H9 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5D3 InChI InChI 1.03 "InChI=1S/C20H17N5O2S3/c1-2-13-5-7-15(8-6-13)30(26,27)20-19-22-18(21-12-14-4-3-10-28-14)17-16(9-11-29-17)25(19)24-23-20/h3-11H,2,12H2,1H3,(H,21,22)" 5D3 InChIKey InChI 1.03 UYFZCWXRMHSLTC-UHFFFAOYSA-N 5D3 SMILES_CANONICAL CACTVS 3.385 "CCc1ccc(cc1)[S](=O)(=O)c2nnn3c4ccsc4c(NCc5sccc5)nc23" 5D3 SMILES CACTVS 3.385 "CCc1ccc(cc1)[S](=O)(=O)c2nnn3c4ccsc4c(NCc5sccc5)nc23" 5D3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1ccc(cc1)S(=O)(=O)c2c3nc(c4c(n3nn2)ccs4)NCc5cccs5" 5D3 SMILES "OpenEye OEToolkits" 2.0.7 "CCc1ccc(cc1)S(=O)(=O)c2c3nc(c4c(n3nn2)ccs4)NCc5cccs5" # _pdbx_chem_comp_identifier.comp_id 5D3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "10-(4-ethylphenyl)sulfonyl-~{N}-(thiophen-2-ylmethyl)-5-thia-1,8,11,12-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-2(6),3,7,9,11-pentaen-7-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5D3 "Create component" 2021-07-08 PDBE 5D3 "Initial release" 2023-10-04 RCSB 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