data_5DI # _chem_comp.id 5DI _chem_comp.name "alpha-D-threo-hexo-2,5-diulo-2,6-pyranosyl fluoride" _chem_comp.type D-SACCHARIDE _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H9 F O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;2-OXO-1,2,DIDEOXY-5F-D-IDOPYRANOSE; alpha-D-threo-hexo-2,5-diulo-2,6-syl fluoride; D-threo-hexo-2,5-diulo-2,6-syl fluoride; threo-hexo-2,5-diulo-2,6-syl fluoride ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-03-14 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.131 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5DI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4AMW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 5DI "2-OXO-1,2,DIDEOXY-5F-D-IDOPYRANOSE" PDB ? 2 5DI "alpha-D-threo-hexo-2,5-diulo-2,6-syl fluoride" PDB ? 3 5DI "D-threo-hexo-2,5-diulo-2,6-syl fluoride" PDB ? 4 5DI "threo-hexo-2,5-diulo-2,6-syl fluoride" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5DI C1 C1 C 0 1 N N N 52.957 25.427 42.152 -1.250 1.045 1.126 C1 5DI 1 5DI C2 C2 C 0 1 N N N 53.367 24.767 41.058 -1.906 0.000 0.249 C2 5DI 2 5DI O2 O2 O 0 1 N N N 53.309 25.354 39.861 -3.012 -0.417 0.496 O2 5DI 3 5DI C3 C3 C 0 1 N N S 53.867 23.363 41.214 -1.129 -0.503 -0.951 C3 5DI 4 5DI O3 O3 O 0 1 N N N 54.672 23.016 40.080 -1.060 0.520 -1.946 O3 5DI 5 5DI C4 C4 C 0 1 N N S 54.661 23.231 42.515 0.286 -0.865 -0.480 C4 5DI 6 5DI O4 O4 O 0 1 N N N 55.065 21.867 42.599 0.227 -2.004 0.381 O4 5DI 7 5DI C5 C5 C 0 1 N N R 53.862 23.695 43.752 0.877 0.323 0.283 C5 5DI 8 5DI O5 O5 O 0 1 N N N 53.245 24.952 43.503 0.078 0.607 1.432 O5 5DI 9 5DI C6 C6 C 0 1 N N N 52.775 22.727 44.207 2.302 -0.015 0.725 C6 5DI 10 5DI O6 O6 O 0 1 N Y N 51.671 22.625 43.292 3.105 -0.291 -0.425 O6 5DI 11 5DI F1 F1 F 0 1 N Y N 54.641 23.872 44.798 0.905 1.445 -0.553 F1 5DI 12 5DI H11C H11C H 0 0 N N N 53.391 26.435 42.082 -1.210 1.997 0.597 H11C 5DI 13 5DI H12C H12C H 0 0 N N N 51.862 25.494 42.077 -1.820 1.161 2.048 H12C 5DI 14 5DI H3C H3C H 0 1 N N N 53.001 22.687 41.270 -1.618 -1.386 -1.362 H3C 5DI 15 5DI H3O H3O H 0 1 N N N 54.590 23.690 39.415 -1.923 0.811 -2.270 H3O 5DI 16 5DI H4C H4C H 0 1 N N N 55.553 23.870 42.433 0.910 -1.093 -1.344 H4C 5DI 17 5DI H4O H4O H 0 1 N N N 55.565 21.733 43.396 -0.145 -2.793 -0.036 H4O 5DI 18 5DI H61C H61C H 0 0 N N N 53.224 21.729 44.321 2.724 0.831 1.268 H61C 5DI 19 5DI H62C H62C H 0 0 N N N 52.390 23.069 45.179 2.283 -0.891 1.374 H62C 5DI 20 5DI H6O H6O H 0 1 N N N 51.033 22.009 43.633 4.023 -0.514 -0.219 H6O 5DI 21 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5DI C1 C2 SING N N 1 5DI C1 O5 SING N N 2 5DI C2 O2 DOUB N N 3 5DI C2 C3 SING N N 4 5DI C3 O3 SING N N 5 5DI C3 C4 SING N N 6 5DI C4 O4 SING N N 7 5DI C4 C5 SING N N 8 5DI C5 O5 SING N N 9 5DI C5 C6 SING N N 10 5DI C5 F1 SING N N 11 5DI C6 O6 SING N N 12 5DI C1 H11C SING N N 13 5DI C1 H12C SING N N 14 5DI C3 H3C SING N N 15 5DI O3 H3O SING N N 16 5DI C4 H4C SING N N 17 5DI O4 H4O SING N N 18 5DI C6 H61C SING N N 19 5DI C6 H62C SING N N 20 5DI O6 H6O SING N N 21 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5DI SMILES ACDLabs 12.01 "O=C1C(O)C(O)C(F)(OC1)CO" 5DI InChI InChI 1.03 "InChI=1S/C6H9FO5/c7-6(2-8)5(11)4(10)3(9)1-12-6/h4-5,8,10-11H,1-2H2/t4-,5+,6+/m1/s1" 5DI InChIKey InChI 1.03 VCJAHEOIRFFLTQ-SRQIZXRXSA-N 5DI SMILES_CANONICAL CACTVS 3.385 "OC[C@]1(F)OCC(=O)[C@@H](O)[C@@H]1O" 5DI SMILES CACTVS 3.385 "OC[C]1(F)OCC(=O)[CH](O)[CH]1O" 5DI SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1C(=O)[C@H]([C@@H]([C@@](O1)(CO)F)O)O" 5DI SMILES "OpenEye OEToolkits" 1.9.2 "C1C(=O)C(C(C(O1)(CO)F)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5DI "SYSTEMATIC NAME" ACDLabs 12.01 "alpha-D-threo-hexo-2,5-diulo-2,6-pyranosyl fluoride" 5DI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(4S,5S,6R)-6-fluoranyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-one" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 5DI "CARBOHYDRATE RING" pyranose PDB ? 5DI "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5DI "Create component" 2012-03-14 EBI 5DI "Other modification" 2012-03-21 EBI 5DI "Initial release" 2013-03-27 RCSB 5DI "Modify descriptor" 2014-09-05 RCSB 5DI "Other modification" 2020-07-03 RCSB 5DI "Modify name" 2020-07-17 RCSB 5DI "Modify synonyms" 2020-07-17 RCSB ##