data_5GK # _chem_comp.id 5GK _chem_comp.name "5-[(4-{cis-4-[3-(trifluoromethyl)phenyl]cyclohexyl}piperazin-1-yl)methyl]pyridin-2(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 F3 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-16 _chem_comp.pdbx_modified_date 2020-12-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 419.483 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5GK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K4F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5GK C01 C1 C 0 1 N N N 86.909 118.980 83.615 -7.658 -1.432 -0.630 C01 5GK 1 5GK N01 N1 N 0 1 N N N 86.803 117.652 84.014 -7.662 -0.998 0.645 N01 5GK 2 5GK O01 O1 O 0 1 N N N 86.977 119.275 82.256 -8.582 -2.113 -1.045 O01 5GK 3 5GK C02 C2 C 0 1 N N N 86.955 120.068 84.605 -6.594 -1.095 -1.485 C02 5GK 4 5GK N02 N2 N 0 1 N N N 87.071 116.869 88.209 -3.393 0.087 1.328 N02 5GK 5 5GK C03 C3 C 0 1 N N N 86.887 119.751 85.971 -5.572 -0.328 -1.008 C03 5GK 6 5GK N03 N3 N 0 1 N N N 86.972 115.968 90.947 -1.106 1.160 0.016 N03 5GK 7 5GK C04 C4 C 0 1 N N N 86.737 117.334 85.423 -6.645 -0.234 1.121 C04 5GK 8 5GK C05 C5 C 0 1 N N N 86.780 118.384 86.387 -5.606 0.108 0.324 C05 5GK 9 5GK C06 C6 C 0 1 N N N 86.704 118.077 87.908 -4.485 0.956 0.869 C06 5GK 10 5GK C07 C7 C 0 1 N N N 86.006 116.283 88.709 -2.389 0.855 2.078 C07 5GK 11 5GK C08 C8 C 0 1 N N N 86.126 115.388 89.933 -1.725 1.870 1.144 C08 5GK 12 5GK C09 C9 C 0 1 N N N 88.266 116.185 90.348 -2.109 0.392 -0.734 C09 5GK 13 5GK C10 C10 C 0 1 N N N 88.183 117.004 88.996 -2.774 -0.622 0.200 C10 5GK 14 5GK C11 C11 C 0 1 N N N 86.413 117.245 91.444 -0.391 2.094 -0.865 C11 5GK 15 5GK C12 C12 C 0 1 N N N 85.065 117.078 92.094 0.675 2.840 -0.060 C12 5GK 16 5GK C13 C13 C 0 1 N N N 85.094 116.178 93.350 1.666 1.834 0.529 C13 5GK 17 5GK C14 C14 C 0 1 N N N 86.220 116.454 94.332 2.336 1.055 -0.605 C14 5GK 18 5GK C15 C15 C 0 1 Y N N 86.653 115.066 94.689 3.312 0.064 -0.025 C15 5GK 19 5GK C16 C16 C 0 1 Y N N 87.182 114.283 93.773 2.868 -0.922 0.835 C16 5GK 20 5GK C17 C17 C 0 1 Y N N 87.599 112.879 94.170 3.763 -1.831 1.367 C17 5GK 21 5GK C18 C18 C 0 1 Y N N 87.414 112.485 95.419 5.104 -1.753 1.038 C18 5GK 22 5GK C19 C19 C 0 1 Y N N 86.782 113.427 96.439 5.549 -0.767 0.178 C19 5GK 23 5GK C20 C20 C 0 1 N N N 86.554 112.997 97.895 7.010 -0.682 -0.180 C20 5GK 24 5GK C21 C21 C 0 1 Y N N 86.422 114.626 96.120 4.652 0.139 -0.358 C21 5GK 25 5GK C22 C22 C 0 1 N N N 87.488 117.152 93.794 1.270 0.309 -1.410 C22 5GK 26 5GK C23 C23 C 0 1 N N N 87.338 117.943 92.436 0.278 1.314 -1.998 C23 5GK 27 5GK F01 F1 F 0 1 N N N 85.868 113.989 98.522 7.515 0.562 0.214 F01 5GK 28 5GK F02 F2 F 0 1 N N N 85.824 111.840 97.913 7.711 -1.699 0.477 F02 5GK 29 5GK F03 F3 F 0 1 N N N 87.776 112.810 98.477 7.161 -0.830 -1.563 F03 5GK 30 5GK H1 H1 H 0 1 N N N 86.773 116.922 83.331 -8.399 -1.233 1.229 H1 5GK 31 5GK H2 H2 H 0 1 N N N 87.040 121.096 84.285 -6.586 -1.441 -2.508 H2 5GK 32 5GK H4 H4 H 0 1 N N N 86.915 120.539 86.709 -4.746 -0.060 -1.650 H4 5GK 33 5GK H6 H6 H 0 1 N N N 86.656 116.306 85.744 -6.666 0.105 2.146 H6 5GK 34 5GK H7 H7 H 0 1 N N N 87.359 118.783 88.439 -4.853 1.550 1.705 H7 5GK 35 5GK H8 H8 H 0 1 N N N 85.665 118.219 88.241 -4.117 1.618 0.085 H8 5GK 36 5GK H9 H9 H 0 1 N N N 85.298 117.083 88.971 -2.874 1.382 2.901 H9 5GK 37 5GK H10 H10 H 0 1 N N N 85.579 115.664 87.906 -1.634 0.177 2.475 H10 5GK 38 5GK H11 H11 H 0 1 N N N 85.123 115.229 90.356 -0.960 2.421 1.691 H11 5GK 39 5GK H12 H12 H 0 1 N N N 86.552 114.422 89.626 -2.476 2.565 0.769 H12 5GK 40 5GK H13 H13 H 0 1 N N N 88.726 115.208 90.140 -2.864 1.070 -1.131 H13 5GK 41 5GK H14 H14 H 0 1 N N N 88.894 116.742 91.059 -1.624 -0.134 -1.556 H14 5GK 42 5GK H15 H15 H 0 1 N N N 89.049 116.708 88.385 -2.023 -1.317 0.576 H15 5GK 43 5GK H16 H16 H 0 1 N N N 88.266 118.069 89.258 -3.539 -1.173 -0.347 H16 5GK 44 5GK H17 H17 H 0 1 N N N 86.287 117.918 90.583 -1.098 2.810 -1.284 H17 5GK 45 5GK H18 H18 H 0 1 N N N 84.694 118.071 92.386 1.205 3.533 -0.713 H18 5GK 46 5GK H19 H19 H 0 1 N N N 84.378 116.631 91.361 0.198 3.395 0.748 H19 5GK 47 5GK H20 H20 H 0 1 N N N 84.141 116.310 93.883 2.426 2.366 1.102 H20 5GK 48 5GK H21 H21 H 0 1 N N N 85.185 115.134 93.016 1.136 1.141 1.182 H21 5GK 49 5GK H22 H22 H 0 1 N N N 85.840 116.986 95.217 2.866 1.748 -1.258 H22 5GK 50 5GK H23 H23 H 0 1 N N N 87.317 114.632 92.760 1.820 -0.983 1.092 H23 5GK 51 5GK H24 H24 H 0 1 N N N 88.040 112.212 93.444 3.416 -2.601 2.039 H24 5GK 52 5GK H25 H25 H 0 1 N N N 87.712 111.491 95.718 5.804 -2.462 1.454 H25 5GK 53 5GK H26 H26 H 0 1 N N N 85.974 115.289 96.845 4.999 0.907 -1.033 H26 5GK 54 5GK H27 H27 H 0 1 N N N 88.257 116.379 93.647 1.747 -0.246 -2.217 H27 5GK 55 5GK H28 H28 H 0 1 N N N 87.827 117.865 94.560 0.740 -0.384 -0.756 H28 5GK 56 5GK H29 H29 H 0 1 N N N 88.332 118.045 91.977 -0.481 0.783 -2.572 H29 5GK 57 5GK H30 H30 H 0 1 N N N 86.930 118.941 92.654 0.808 2.007 -2.652 H30 5GK 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GK O01 C01 DOUB N N 1 5GK C01 N01 SING N N 2 5GK C01 C02 SING N N 3 5GK N01 C04 SING N N 4 5GK C02 C03 DOUB N N 5 5GK C04 C05 DOUB N N 6 5GK C03 C05 SING N N 7 5GK C05 C06 SING N N 8 5GK C06 N02 SING N N 9 5GK N02 C07 SING N N 10 5GK N02 C10 SING N N 11 5GK C07 C08 SING N N 12 5GK C10 C09 SING N N 13 5GK C08 N03 SING N N 14 5GK C09 N03 SING N N 15 5GK N03 C11 SING N N 16 5GK C11 C12 SING N N 17 5GK C11 C23 SING N N 18 5GK C12 C13 SING N N 19 5GK C23 C22 SING N N 20 5GK C13 C14 SING N N 21 5GK C16 C17 DOUB Y N 22 5GK C16 C15 SING Y N 23 5GK C22 C14 SING N N 24 5GK C17 C18 SING Y N 25 5GK C14 C15 SING N N 26 5GK C15 C21 DOUB Y N 27 5GK C18 C19 DOUB Y N 28 5GK C21 C19 SING Y N 29 5GK C19 C20 SING N N 30 5GK C20 F02 SING N N 31 5GK C20 F03 SING N N 32 5GK C20 F01 SING N N 33 5GK N01 H1 SING N N 34 5GK C02 H2 SING N N 35 5GK C03 H4 SING N N 36 5GK C04 H6 SING N N 37 5GK C06 H7 SING N N 38 5GK C06 H8 SING N N 39 5GK C07 H9 SING N N 40 5GK C07 H10 SING N N 41 5GK C08 H11 SING N N 42 5GK C08 H12 SING N N 43 5GK C09 H13 SING N N 44 5GK C09 H14 SING N N 45 5GK C10 H15 SING N N 46 5GK C10 H16 SING N N 47 5GK C11 H17 SING N N 48 5GK C12 H18 SING N N 49 5GK C12 H19 SING N N 50 5GK C13 H20 SING N N 51 5GK C13 H21 SING N N 52 5GK C14 H22 SING N N 53 5GK C16 H23 SING N N 54 5GK C17 H24 SING N N 55 5GK C18 H25 SING N N 56 5GK C21 H26 SING N N 57 5GK C22 H27 SING N N 58 5GK C22 H28 SING N N 59 5GK C23 H29 SING N N 60 5GK C23 H30 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5GK SMILES ACDLabs 12.01 "C1(NC=C(C=C1)CN4CCN(C3CCC(c2cc(ccc2)C(F)(F)F)CC3)CC4)=O" 5GK InChI InChI 1.03 "InChI=1S/C23H28F3N3O/c24-23(25,26)20-3-1-2-19(14-20)18-5-7-21(8-6-18)29-12-10-28(11-13-29)16-17-4-9-22(30)27-15-17/h1-4,9,14-15,18,21H,5-8,10-13,16H2,(H,27,30)/t18-,21+" 5GK InChIKey InChI 1.03 DMSJDEOGYRYVRN-RVWIWJKTSA-N 5GK SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1cccc(c1)[C@@H]2CC[C@@H](CC2)N3CCN(CC3)CC4=CNC(=O)C=C4" 5GK SMILES CACTVS 3.385 "FC(F)(F)c1cccc(c1)[CH]2CC[CH](CC2)N3CCN(CC3)CC4=CNC(=O)C=C4" 5GK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(F)(F)F)C2CCC(CC2)N3CCN(CC3)CC4=CNC(=O)C=C4" 5GK SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(F)(F)F)C2CCC(CC2)N3CCN(CC3)CC4=CNC(=O)C=C4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5GK "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(4-{cis-4-[3-(trifluoromethyl)phenyl]cyclohexyl}piperazin-1-yl)methyl]pyridin-2(1H)-one" 5GK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[[4-[4-[3-(trifluoromethyl)phenyl]cyclohexyl]piperazin-1-yl]methyl]-1~{H}-pyridin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5GK "Create component" 2020-09-16 RCSB 5GK "Initial release" 2020-12-09 RCSB ##