data_5LD # _chem_comp.id 5LD _chem_comp.name "[(2R)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H10 N3 O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(R)-C348" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-10 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 207.124 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5LD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DNX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5LD O10 O1 O 0 1 N N N -36.415 20.159 44.365 2.598 0.589 1.643 O10 5LD 1 5LD P9 P1 P 0 1 N N N -35.184 20.615 45.126 2.663 0.024 0.136 P9 5LD 2 5LD O11 O2 O 0 1 N N N -34.309 19.423 45.536 4.044 0.485 -0.551 O11 5LD 3 5LD O12 O3 O 0 1 N N N -34.386 21.626 44.312 2.593 -1.455 0.161 O12 5LD 4 5LD C8 C1 C 0 1 N N N -35.793 21.367 46.638 1.258 0.682 -0.821 C8 5LD 5 5LD C7 C2 C 0 1 N N R -34.757 21.603 47.753 -0.051 0.142 -0.242 C7 5LD 6 5LD O13 O4 O 0 1 N N N -35.396 22.115 48.920 -0.103 -1.274 -0.421 O13 5LD 7 5LD C6 C3 C 0 1 N N N -33.731 22.668 47.388 -1.234 0.791 -0.964 C6 5LD 8 5LD N2 N1 N 0 1 Y N N -32.491 22.581 48.168 -2.485 0.366 -0.331 N2 5LD 9 5LD N1 N2 N 0 1 Y N N -32.570 22.486 49.567 -2.915 -0.954 -0.119 N1 5LD 10 5LD C5 C4 C 0 1 Y N N -31.264 22.451 49.951 -4.078 -0.882 0.472 C5 5LD 11 5LD N4 N3 N 0 1 Y N N -30.455 22.473 48.866 -4.399 0.400 0.641 N4 5LD 12 5LD C3 C5 C 0 1 Y N N -31.241 22.583 47.761 -3.447 1.162 0.167 C3 5LD 13 5LD H1 H1 H 0 1 N N N -36.447 20.597 43.523 2.639 1.553 1.703 H1 5LD 14 5LD H2 H2 H 0 1 N N N -33.429 19.545 45.200 4.835 0.169 -0.094 H2 5LD 15 5LD H3 H3 H 0 1 N N N -36.229 22.342 46.375 1.259 1.771 -0.765 H3 5LD 16 5LD H4 H4 H 0 1 N N N -36.578 20.712 47.044 1.350 0.372 -1.862 H4 5LD 17 5LD H5 H5 H 0 1 N N N -34.240 20.657 47.973 -0.102 0.377 0.822 H5 5LD 18 5LD H6 H6 H 0 1 N N N -34.748 22.256 49.600 -0.062 -1.556 -1.345 H6 5LD 19 5LD H7 H7 H 0 1 N N N -33.480 22.558 46.323 -1.146 1.876 -0.903 H7 5LD 20 5LD H8 H8 H 0 1 N N N -34.181 23.657 47.559 -1.233 0.485 -2.010 H8 5LD 21 5LD H9 H9 H 0 1 N N N -30.923 22.411 50.975 -4.682 -1.725 0.774 H9 5LD 22 5LD H10 H10 H 0 1 N N N -30.901 22.658 46.739 -3.437 2.242 0.172 H10 5LD 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5LD O12 P9 DOUB N N 1 5LD O10 P9 SING N N 2 5LD P9 O11 SING N N 3 5LD P9 C8 SING N N 4 5LD C8 C7 SING N N 5 5LD C6 C7 SING N N 6 5LD C6 N2 SING N N 7 5LD C7 O13 SING N N 8 5LD C3 N2 SING Y N 9 5LD C3 N4 DOUB Y N 10 5LD N2 N1 SING Y N 11 5LD N4 C5 SING Y N 12 5LD N1 C5 DOUB Y N 13 5LD O10 H1 SING N N 14 5LD O11 H2 SING N N 15 5LD C8 H3 SING N N 16 5LD C8 H4 SING N N 17 5LD C7 H5 SING N N 18 5LD O13 H6 SING N N 19 5LD C6 H7 SING N N 20 5LD C6 H8 SING N N 21 5LD C5 H9 SING N N 22 5LD C3 H10 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5LD SMILES ACDLabs 12.01 "OP(O)(CC(O)Cn1ncnc1)=O" 5LD InChI InChI 1.03 "InChI=1S/C5H10N3O4P/c9-5(2-13(10,11)12)1-8-4-6-3-7-8/h3-5,9H,1-2H2,(H2,10,11,12)/t5-/m1/s1" 5LD InChIKey InChI 1.03 ZXKJPBBOMRHTCH-RXMQYKEDSA-N 5LD SMILES_CANONICAL CACTVS 3.385 "O[C@H](Cn1cncn1)C[P](O)(O)=O" 5LD SMILES CACTVS 3.385 "O[CH](Cn1cncn1)C[P](O)(O)=O" 5LD SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ncn(n1)C[C@H](CP(=O)(O)O)O" 5LD SMILES "OpenEye OEToolkits" 1.9.2 "c1ncn(n1)CC(CP(=O)(O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5LD "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]phosphonic acid" 5LD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2R)-2-oxidanyl-3-(1,2,4-triazol-1-yl)propyl]phosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5LD "Create component" 2015-09-10 EBI 5LD "Initial release" 2016-10-05 RCSB 5LD "Other modification" 2019-09-04 EBI 5LD "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5LD _pdbx_chem_comp_synonyms.name "(R)-C348" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##