data_5N9 # _chem_comp.id 5N9 _chem_comp.name "~{N}-[[2-(3-chloranyl-4-propan-2-yloxy-phenyl)pyrimidin-5-yl]methyl]-2-(trifluoromethyl)pyridin-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H18 Cl F3 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-13 _chem_comp.pdbx_modified_date 2022-07-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 422.831 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5N9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P4U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5N9 C13 C1 C 0 1 N N N -53.779 -0.189 -7.138 2.279 1.603 -0.916 C13 5N9 1 5N9 C15 C2 C 0 1 Y N N -51.927 5.478 -9.853 -3.874 -0.399 -1.257 C15 5N9 2 5N9 C17 C3 C 0 1 Y N N -52.613 6.986 -11.610 -5.885 -0.299 0.043 C17 5N9 3 5N9 C20 C4 C 0 1 Y N N -54.688 1.750 -8.536 0.128 1.664 0.389 C20 5N9 4 5N9 C22 C5 C 0 1 Y N N -53.258 3.390 -9.303 -1.770 0.660 -0.440 C22 5N9 5 5N9 C24 C6 C 0 1 Y N N -52.351 1.686 -8.058 0.139 0.553 -1.722 C24 5N9 6 5N9 C28 C7 C 0 1 N N N -50.251 8.934 -12.798 -7.615 -2.746 -0.843 C28 5N9 7 5N9 C02 C8 C 0 1 Y N N -54.141 -2.163 -10.997 6.495 1.767 -0.981 C02 5N9 8 5N9 C03 C9 C 0 1 Y N N -54.078 -1.562 -9.747 5.116 1.718 -0.963 C03 5N9 9 5N9 C04 C10 C 0 1 Y N N -52.955 -1.774 -8.953 4.485 0.617 -0.386 C04 5N9 10 5N9 C05 C11 C 0 1 Y N N -51.952 -2.590 -9.465 5.281 -0.395 0.151 C05 5N9 11 5N9 C06 C12 C 0 1 Y N N -52.078 -3.159 -10.723 6.653 -0.270 0.093 C06 5N9 12 5N9 C07 C13 C 0 1 N N N -50.965 -4.051 -11.274 7.525 -1.356 0.669 C07 5N9 13 5N9 C12 C14 C 0 1 Y N N -53.611 1.114 -7.925 0.820 1.266 -0.746 C12 5N9 14 5N9 C14 C15 C 0 1 Y N N -53.028 4.677 -10.103 -3.204 0.324 -0.270 C14 5N9 15 5N9 C16 C16 C 0 1 Y N N -51.720 6.630 -10.602 -5.208 -0.705 -1.099 C16 5N9 16 5N9 C18 C17 C 0 1 Y N N -53.705 6.168 -11.859 -5.220 0.417 1.031 C18 5N9 17 5N9 C19 C18 C 0 1 Y N N -53.909 5.017 -11.113 -3.885 0.731 0.877 C19 5N9 18 5N9 C27 C19 C 0 1 N N N -51.543 9.130 -12.002 -7.852 -1.235 -0.908 C27 5N9 19 5N9 C29 C20 C 0 1 N N N -52.192 10.494 -12.306 -9.354 -0.952 -0.843 C29 5N9 20 5N9 F08 F1 F 0 1 N N N -51.408 -5.347 -11.368 8.723 -0.799 1.127 F08 5N9 21 5N9 F09 F2 F 0 1 N N N -50.598 -3.603 -12.519 6.859 -1.971 1.735 F09 5N9 22 5N9 F10 F3 F 0 1 N N N -49.894 -4.005 -10.428 7.800 -2.306 -0.320 F10 5N9 23 5N9 N01 N1 N 0 1 Y N N -53.160 -2.930 -11.440 7.213 0.787 -0.466 N01 5N9 24 5N9 N11 N2 N 0 1 N N N -52.822 -1.180 -7.622 3.097 0.529 -0.347 N11 5N9 25 5N9 N21 N3 N 0 1 Y N N -54.473 2.874 -9.209 -1.150 1.348 0.509 N21 5N9 26 5N9 N23 N4 N 0 1 Y N N -52.214 2.807 -8.744 -1.138 0.265 -1.537 N23 5N9 27 5N9 O26 O1 O 0 1 N N N -52.451 8.143 -12.405 -7.201 -0.603 0.196 O26 5N9 28 5N9 CL1 CL1 CL 0 0 N N N -54.862 6.589 -13.149 -6.070 0.922 2.458 CL25 5N9 29 5N9 H132 H1 H 0 0 N N N -53.599 0.003 -6.070 2.506 1.709 -1.977 H132 5N9 30 5N9 H131 H2 H 0 0 N N N -54.802 -0.570 -7.275 2.498 2.538 -0.402 H131 5N9 31 5N9 H151 H3 H 0 0 N N N -51.228 5.207 -9.075 -3.348 -0.715 -2.146 H151 5N9 32 5N9 H201 H4 H 0 0 N N N -55.683 1.336 -8.464 0.630 2.220 1.167 H201 5N9 33 5N9 H241 H5 H 0 0 N N N -51.490 1.218 -7.604 0.648 0.229 -2.617 H241 5N9 34 5N9 H282 H6 H 0 0 N N N -49.517 9.698 -12.501 -6.544 -2.947 -0.889 H282 5N9 35 5N9 H281 H7 H 0 0 N N N -49.842 7.934 -12.593 -8.018 -3.137 0.091 H281 5N9 36 5N9 H283 H8 H 0 0 N N N -50.465 9.029 -13.873 -8.112 -3.228 -1.684 H283 5N9 37 5N9 H021 H9 H 0 0 N N N -55.008 -2.001 -11.619 6.992 2.616 -1.426 H021 5N9 38 5N9 H031 H10 H 0 0 N N N -54.888 -0.940 -9.396 4.534 2.522 -1.389 H031 5N9 39 5N9 H051 H11 H 0 0 N N N -51.067 -2.782 -8.877 4.830 -1.264 0.607 H051 5N9 40 5N9 H161 H12 H 0 0 N N N -50.861 7.253 -10.401 -5.728 -1.261 -1.865 H161 5N9 41 5N9 H191 H13 H 0 0 N N N -54.759 4.384 -11.322 -3.368 1.287 1.644 H191 5N9 42 5N9 H271 H14 H 0 0 N N N -51.326 9.061 -10.926 -7.449 -0.844 -1.841 H271 5N9 43 5N9 H293 H15 H 0 0 N N N -53.116 10.600 -11.718 -9.758 -1.344 0.091 H293 5N9 44 5N9 H291 H16 H 0 0 N N N -51.493 11.300 -12.039 -9.524 0.123 -0.889 H291 5N9 45 5N9 H292 H17 H 0 0 N N N -52.431 10.556 -13.378 -9.852 -1.435 -1.684 H292 5N9 46 5N9 H111 H18 H 0 0 N N N -52.844 -1.938 -6.970 2.671 -0.243 0.058 H111 5N9 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5N9 CL1 C18 SING N N 1 5N9 C28 C27 SING N N 2 5N9 F09 C07 SING N N 3 5N9 O26 C27 SING N N 4 5N9 O26 C17 SING N N 5 5N9 C29 C27 SING N N 6 5N9 C18 C17 DOUB Y N 7 5N9 C18 C19 SING Y N 8 5N9 C17 C16 SING Y N 9 5N9 N01 C02 DOUB Y N 10 5N9 N01 C06 SING Y N 11 5N9 F08 C07 SING N N 12 5N9 C07 C06 SING N N 13 5N9 C07 F10 SING N N 14 5N9 C19 C14 DOUB Y N 15 5N9 C02 C03 SING Y N 16 5N9 C06 C05 DOUB Y N 17 5N9 C16 C15 DOUB Y N 18 5N9 C14 C15 SING Y N 19 5N9 C14 C22 SING N N 20 5N9 C03 C04 DOUB Y N 21 5N9 C05 C04 SING Y N 22 5N9 C22 N21 DOUB Y N 23 5N9 C22 N23 SING Y N 24 5N9 N21 C20 SING Y N 25 5N9 C04 N11 SING N N 26 5N9 N23 C24 DOUB Y N 27 5N9 C20 C12 DOUB Y N 28 5N9 C24 C12 SING Y N 29 5N9 C12 C13 SING N N 30 5N9 N11 C13 SING N N 31 5N9 C13 H132 SING N N 32 5N9 C13 H131 SING N N 33 5N9 C15 H151 SING N N 34 5N9 C20 H201 SING N N 35 5N9 C24 H241 SING N N 36 5N9 C28 H282 SING N N 37 5N9 C28 H281 SING N N 38 5N9 C28 H283 SING N N 39 5N9 C02 H021 SING N N 40 5N9 C03 H031 SING N N 41 5N9 C05 H051 SING N N 42 5N9 C16 H161 SING N N 43 5N9 C19 H191 SING N N 44 5N9 C27 H271 SING N N 45 5N9 C29 H293 SING N N 46 5N9 C29 H291 SING N N 47 5N9 C29 H292 SING N N 48 5N9 N11 H111 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5N9 InChI InChI 1.03 "InChI=1S/C20H18ClF3N4O/c1-12(2)29-17-4-3-14(7-16(17)21)19-27-10-13(11-28-19)9-26-15-5-6-25-18(8-15)20(22,23)24/h3-8,10-12H,9H2,1-2H3,(H,25,26)" 5N9 InChIKey InChI 1.03 FGUVKWPOHXVGKT-UHFFFAOYSA-N 5N9 SMILES_CANONICAL CACTVS 3.385 "CC(C)Oc1ccc(cc1Cl)c2ncc(CNc3ccnc(c3)C(F)(F)F)cn2" 5N9 SMILES CACTVS 3.385 "CC(C)Oc1ccc(cc1Cl)c2ncc(CNc3ccnc(c3)C(F)(F)F)cn2" 5N9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1ccc(cc1Cl)c2ncc(cn2)CNc3ccnc(c3)C(F)(F)F" 5N9 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1ccc(cc1Cl)c2ncc(cn2)CNc3ccnc(c3)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id 5N9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[2-(3-chloranyl-4-propan-2-yloxy-phenyl)pyrimidin-5-yl]methyl]-2-(trifluoromethyl)pyridin-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5N9 "Create component" 2021-07-13 PDBE 5N9 "Initial release" 2022-07-27 RCSB #