data_5NZ # _chem_comp.id 5NZ _chem_comp.name "6-phenyl-5-[5-[3-[2-(1,2,3,4-tetrahydroacridin-9-ylamino)ethyl]-1,2,3-triazol-4-yl]pentyl]phenanthridin-5-ium-3,8-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C41 H43 N8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2015-10-29 _chem_comp.pdbx_modified_date 2016-01-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 647.834 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5NZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EHN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5NZ N2 N1 N 0 1 N N N 36.963 21.744 4.271 -1.111 -4.613 -0.180 N2 5NZ 1 5NZ C8 C1 C 0 1 Y N N 37.508 22.773 4.957 -2.259 -3.820 -0.239 C8 5NZ 2 5NZ C7 C2 C 0 1 Y N N 38.860 23.098 4.797 -3.444 -4.357 -0.745 C7 5NZ 3 5NZ C6 C3 C 0 1 Y N N 39.463 24.058 5.622 -4.576 -3.597 -0.811 C6 5NZ 4 5NZ C5 C4 C 0 1 Y N N 38.714 24.706 6.614 -4.555 -2.273 -0.370 C5 5NZ 5 5NZ C19 C5 C 0 1 Y N N 36.722 23.424 5.905 -2.211 -2.515 0.208 C19 5NZ 6 5NZ C18 C6 C 0 1 Y N N 37.257 24.368 6.798 -3.362 -1.714 0.146 C18 5NZ 7 5NZ N3 N2 N 1 1 Y N N 36.487 24.935 7.781 -3.322 -0.443 0.573 N3 5NZ 8 5NZ C11 C7 C 0 1 Y N N 37.024 25.929 8.651 -4.360 0.360 0.548 C11 5NZ 9 5NZ C12 C8 C 0 1 Y N N 36.173 26.498 9.730 -4.222 1.749 1.042 C12 5NZ 10 5NZ C13 C9 C 0 1 Y N N 36.121 25.830 10.963 -3.848 1.989 2.364 C13 5NZ 11 5NZ C14 C10 C 0 1 Y N N 35.299 26.323 11.980 -3.722 3.286 2.818 C14 5NZ 12 5NZ C15 C11 C 0 1 Y N N 34.558 27.496 11.764 -3.966 4.347 1.964 C15 5NZ 13 5NZ C16 C12 C 0 1 Y N N 34.606 28.164 10.535 -4.338 4.116 0.652 C16 5NZ 14 5NZ C17 C13 C 0 1 Y N N 35.427 27.666 9.514 -4.462 2.824 0.185 C17 5NZ 15 5NZ C10 C14 C 0 1 Y N N 38.461 26.342 8.548 -5.652 -0.102 0.037 C10 5NZ 16 5NZ C9 C15 C 0 1 Y N N 39.032 27.275 9.416 -6.772 0.729 -0.002 C9 5NZ 17 5NZ C4 C16 C 0 1 Y N N 39.327 25.740 7.491 -5.757 -1.434 -0.430 C4 5NZ 18 5NZ C3 C17 C 0 1 Y N N 40.659 26.157 7.359 -6.972 -1.906 -0.923 C3 5NZ 19 5NZ C2 C18 C 0 1 Y N N 41.195 27.044 8.295 -8.058 -1.079 -0.953 C2 5NZ 20 5NZ C1 C19 C 0 1 Y N N 40.383 27.617 9.289 -7.966 0.237 -0.496 C1 5NZ 21 5NZ N1 N3 N 0 1 N N N 40.899 28.560 10.118 -9.091 1.064 -0.537 N1 5NZ 22 5NZ C20 C20 C 0 1 N N N 35.037 24.620 7.867 -2.055 0.075 1.096 C20 5NZ 23 5NZ C21 C21 C 0 1 N N N 34.740 23.354 8.665 -1.236 0.672 -0.051 C21 5NZ 24 5NZ C22 C22 C 0 1 N N N 33.259 23.017 8.663 0.087 1.213 0.495 C22 5NZ 25 5NZ C24 C23 C 0 1 N N N 32.983 22.345 9.993 0.852 1.916 -0.628 C24 5NZ 26 5NZ C25 C24 C 0 1 N N N 31.514 22.024 10.165 2.117 2.560 -0.057 C25 5NZ 27 5NZ C26 C25 C 0 1 Y N N 31.330 21.056 11.315 2.809 3.351 -1.138 C26 5NZ 28 5NZ N4 N4 N 0 1 Y N N 31.363 21.353 12.618 3.814 2.927 -1.939 N4 5NZ 29 5NZ N5 N5 N 0 1 Y N N 31.087 20.227 13.378 4.133 3.891 -2.730 N5 5NZ 30 5NZ N6 N6 N 0 1 Y N N 30.918 19.181 12.464 3.398 4.920 -2.495 N6 5NZ 31 5NZ C27 C26 C 0 1 Y N N 31.044 19.695 11.216 2.547 4.627 -1.505 C27 5NZ 32 5NZ C28 C27 C 0 1 N N N 31.489 22.621 13.326 4.432 1.599 -1.910 C28 5NZ 33 5NZ C29 C28 C 0 1 N N N 30.863 22.515 14.677 5.548 1.579 -0.863 C29 5NZ 34 5NZ N7 N7 N 0 1 N N N 29.522 23.021 14.802 6.250 0.290 -0.920 N7 5NZ 35 5NZ C30 C29 C 0 1 Y N N 28.407 22.300 14.552 5.609 -0.659 -0.138 C30 5NZ 36 5NZ C31 C30 C 0 1 Y N N 27.368 23.021 13.772 5.746 -0.649 1.268 C31 5NZ 37 5NZ C32 C31 C 0 1 Y N N 27.569 24.349 13.363 6.527 0.312 1.924 C32 5NZ 38 5NZ C33 C32 C 0 1 Y N N 26.087 22.331 13.478 5.072 -1.639 2.021 C33 5NZ 39 5NZ C34 C33 C 0 1 Y N N 25.139 23.004 12.712 5.200 -1.636 3.421 C34 5NZ 40 5NZ C35 C34 C 0 1 Y N N 25.397 24.310 12.308 5.966 -0.688 4.027 C35 5NZ 41 5NZ C36 C35 C 0 1 Y N N 26.538 25.000 12.720 6.628 0.285 3.282 C36 5NZ 42 5NZ N8 N8 N 0 1 Y N N 25.873 21.057 13.877 4.331 -2.556 1.396 N8 5NZ 43 5NZ C37 C36 C 0 1 Y N N 26.743 20.333 14.625 4.191 -2.583 0.082 C37 5NZ 44 5NZ C38 C37 C 0 1 N N N 26.322 18.906 14.974 3.330 -3.681 -0.493 C38 5NZ 45 5NZ C39 C38 C 0 1 Y N N 28.051 20.940 15.075 4.812 -1.640 -0.720 C39 5NZ 46 5NZ C40 C39 C 0 1 N N N 28.972 20.125 15.963 4.665 -1.619 -2.218 C40 5NZ 47 5NZ C41 C40 C 0 1 N N N 28.166 19.038 16.689 4.141 -2.962 -2.725 C41 5NZ 48 5NZ C42 C41 C 0 1 N N N 27.411 18.141 15.707 2.904 -3.339 -1.919 C42 5NZ 49 5NZ H1 H1 H 0 1 N N N 35.995 21.659 4.509 -0.286 -4.246 0.174 H1 5NZ 50 5NZ H2 H2 H 0 1 N N N 37.051 21.914 3.290 -1.140 -5.532 -0.490 H2 5NZ 51 5NZ H3 H3 H 0 1 N N N 39.443 22.606 4.033 -3.466 -5.381 -1.088 H3 5NZ 52 5NZ H4 H4 H 0 1 N N N 40.508 24.299 5.493 -5.488 -4.020 -1.204 H4 5NZ 53 5NZ H5 H5 H 0 1 N N N 35.668 23.196 5.955 -1.291 -2.111 0.602 H5 5NZ 54 5NZ H6 H6 H 0 1 N N N 36.712 24.941 11.125 -3.658 1.161 3.031 H6 5NZ 55 5NZ H7 H7 H 0 1 N N N 35.234 25.805 12.926 -3.433 3.473 3.841 H7 5NZ 56 5NZ H8 H8 H 0 1 N N N 33.941 27.889 12.559 -3.866 5.361 2.324 H8 5NZ 57 5NZ H9 H9 H 0 1 N N N 34.016 29.054 10.375 -4.528 4.949 -0.009 H9 5NZ 58 5NZ H10 H10 H 0 1 N N N 35.485 28.179 8.565 -4.747 2.645 -0.841 H10 5NZ 59 5NZ H11 H11 H 0 1 N N N 38.430 27.733 10.187 -6.707 1.748 0.351 H11 5NZ 60 5NZ H12 H12 H 0 1 N N N 41.265 25.796 6.541 -7.054 -2.922 -1.279 H12 5NZ 61 5NZ H13 H13 H 0 1 N N N 42.245 27.293 8.255 -8.999 -1.447 -1.336 H13 5NZ 62 5NZ H14 H14 H 0 1 N N N 40.195 28.861 10.761 -9.931 0.723 -0.883 H14 5NZ 63 5NZ H15 H15 H 0 1 N N N 41.669 28.173 10.625 -9.033 1.978 -0.220 H15 5NZ 64 5NZ H16 H16 H 0 1 N N N 34.524 25.465 8.350 -2.256 0.847 1.839 H16 5NZ 65 5NZ H17 H17 H 0 1 N N N 34.647 24.489 6.847 -1.493 -0.737 1.559 H17 5NZ 66 5NZ H18 H18 H 0 1 N N N 35.296 22.515 8.221 -1.035 -0.100 -0.794 H18 5NZ 67 5NZ H19 H19 H 0 1 N N N 35.069 23.503 9.704 -1.797 1.484 -0.513 H19 5NZ 68 5NZ H20 H20 H 0 1 N N N 32.658 23.933 8.566 -0.114 1.922 1.297 H20 5NZ 69 5NZ H21 H21 H 0 1 N N N 33.023 22.334 7.833 0.685 0.387 0.881 H21 5NZ 70 5NZ H22 H22 H 0 1 N N N 33.561 21.410 10.047 1.128 1.188 -1.391 H22 5NZ 71 5NZ H23 H23 H 0 1 N N N 33.298 23.018 10.804 0.221 2.686 -1.071 H23 5NZ 72 5NZ H24 H24 H 0 1 N N N 30.960 22.951 10.376 1.848 3.225 0.764 H24 5NZ 73 5NZ H25 H25 H 0 1 N N N 31.129 21.569 9.240 2.787 1.783 0.309 H25 5NZ 74 5NZ H26 H26 H 0 1 N N N 30.940 19.141 10.295 1.799 5.281 -1.082 H26 5NZ 75 5NZ H27 H27 H 0 1 N N N 32.554 22.872 13.437 3.680 0.854 -1.653 H27 5NZ 76 5NZ H28 H28 H 0 1 N N N 30.984 23.411 12.751 4.850 1.372 -2.890 H28 5NZ 77 5NZ H29 H29 H 0 1 N N N 30.847 21.451 14.956 6.253 2.385 -1.068 H29 5NZ 78 5NZ H30 H30 H 0 1 N N N 31.497 23.070 15.384 5.119 1.716 0.129 H30 5NZ 79 5NZ H31 H31 H 0 1 N N N 29.474 23.811 14.191 7.216 0.391 -0.647 H31 5NZ 80 5NZ H32 H32 H 0 1 N N N 28.509 24.848 13.548 7.046 1.070 1.355 H32 5NZ 81 5NZ H33 H33 H 0 1 N N N 24.215 22.518 12.435 4.692 -2.382 4.014 H33 5NZ 82 5NZ H34 H34 H 0 1 N N N 24.693 24.805 11.656 6.061 -0.689 5.103 H34 5NZ 83 5NZ H35 H35 H 0 1 N N N 26.614 26.061 12.532 7.231 1.025 3.787 H35 5NZ 84 5NZ H36 H36 H 0 1 N N N 25.429 18.948 15.614 3.895 -4.613 -0.500 H36 5NZ 85 5NZ H37 H37 H 0 1 N N N 26.081 18.372 14.043 2.443 -3.804 0.128 H37 5NZ 86 5NZ H38 H38 H 0 1 N N N 29.750 19.652 15.346 3.966 -0.832 -2.500 H38 5NZ 87 5NZ H39 H39 H 0 1 N N N 29.444 20.786 16.705 5.635 -1.418 -2.672 H39 5NZ 88 5NZ H40 H40 H 0 1 N N N 27.441 19.521 17.360 3.885 -2.881 -3.781 H40 5NZ 89 5NZ H41 H41 H 0 1 N N N 28.856 18.418 17.280 4.905 -3.728 -2.590 H41 5NZ 90 5NZ H42 H42 H 0 1 N N N 26.951 17.311 16.263 2.417 -4.203 -2.372 H42 5NZ 91 5NZ H43 H43 H 0 1 N N N 28.123 17.740 14.971 2.217 -2.494 -1.903 H43 5NZ 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5NZ N2 C8 SING N N 1 5NZ C7 C8 DOUB Y N 2 5NZ C7 C6 SING Y N 3 5NZ C8 C19 SING Y N 4 5NZ C6 C5 DOUB Y N 5 5NZ C19 C18 DOUB Y N 6 5NZ C5 C18 SING Y N 7 5NZ C5 C4 SING Y N 8 5NZ C18 N3 SING Y N 9 5NZ C3 C4 DOUB Y N 10 5NZ C3 C2 SING Y N 11 5NZ C4 C10 SING Y N 12 5NZ N3 C20 SING N N 13 5NZ N3 C11 DOUB Y N 14 5NZ C20 C21 SING N N 15 5NZ C2 C1 DOUB Y N 16 5NZ C10 C11 SING Y N 17 5NZ C10 C9 DOUB Y N 18 5NZ C11 C12 SING N N 19 5NZ C22 C21 SING N N 20 5NZ C22 C24 SING N N 21 5NZ C1 C9 SING Y N 22 5NZ C1 N1 SING N N 23 5NZ C17 C12 DOUB Y N 24 5NZ C17 C16 SING Y N 25 5NZ C12 C13 SING Y N 26 5NZ C24 C25 SING N N 27 5NZ C25 C26 SING N N 28 5NZ C16 C15 DOUB Y N 29 5NZ C13 C14 DOUB Y N 30 5NZ C27 C26 DOUB Y N 31 5NZ C27 N6 SING Y N 32 5NZ C26 N4 SING Y N 33 5NZ C15 C14 SING Y N 34 5NZ C35 C34 DOUB Y N 35 5NZ C35 C36 SING Y N 36 5NZ N6 N5 DOUB Y N 37 5NZ N4 C28 SING N N 38 5NZ N4 N5 SING Y N 39 5NZ C34 C33 SING Y N 40 5NZ C36 C32 DOUB Y N 41 5NZ C28 C29 SING N N 42 5NZ C32 C31 SING Y N 43 5NZ C33 C31 DOUB Y N 44 5NZ C33 N8 SING Y N 45 5NZ C31 C30 SING Y N 46 5NZ N8 C37 DOUB Y N 47 5NZ C30 N7 SING N N 48 5NZ C30 C39 DOUB Y N 49 5NZ C37 C38 SING N N 50 5NZ C37 C39 SING Y N 51 5NZ C29 N7 SING N N 52 5NZ C38 C42 SING N N 53 5NZ C39 C40 SING N N 54 5NZ C42 C41 SING N N 55 5NZ C40 C41 SING N N 56 5NZ N2 H1 SING N N 57 5NZ N2 H2 SING N N 58 5NZ C7 H3 SING N N 59 5NZ C6 H4 SING N N 60 5NZ C19 H5 SING N N 61 5NZ C13 H6 SING N N 62 5NZ C14 H7 SING N N 63 5NZ C15 H8 SING N N 64 5NZ C16 H9 SING N N 65 5NZ C17 H10 SING N N 66 5NZ C9 H11 SING N N 67 5NZ C3 H12 SING N N 68 5NZ C2 H13 SING N N 69 5NZ N1 H14 SING N N 70 5NZ N1 H15 SING N N 71 5NZ C20 H16 SING N N 72 5NZ C20 H17 SING N N 73 5NZ C21 H18 SING N N 74 5NZ C21 H19 SING N N 75 5NZ C22 H20 SING N N 76 5NZ C22 H21 SING N N 77 5NZ C24 H22 SING N N 78 5NZ C24 H23 SING N N 79 5NZ C25 H24 SING N N 80 5NZ C25 H25 SING N N 81 5NZ C27 H26 SING N N 82 5NZ C28 H27 SING N N 83 5NZ C28 H28 SING N N 84 5NZ C29 H29 SING N N 85 5NZ C29 H30 SING N N 86 5NZ N7 H31 SING N N 87 5NZ C32 H32 SING N N 88 5NZ C34 H33 SING N N 89 5NZ C35 H34 SING N N 90 5NZ C36 H35 SING N N 91 5NZ C38 H36 SING N N 92 5NZ C38 H37 SING N N 93 5NZ C40 H38 SING N N 94 5NZ C40 H39 SING N N 95 5NZ C41 H40 SING N N 96 5NZ C41 H41 SING N N 97 5NZ C42 H42 SING N N 98 5NZ C42 H43 SING N N 99 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5NZ InChI InChI 1.03 ;InChI=1S/C41H42N8/c42-29-18-20-32-33-21-19-30(43)26-39(33)48(41(36(32)25-29)28-11-3-1-4-12-28)23-10-2-5-13-31-27-45-47-49(31)24-22-44-40-34-14-6-8-16-37(34)46-38-17-9-7-15-35(38)40/h1,3-4,6,8,11-12,14,16,18-21,25-27,43H,2,5,7,9-10,13,15,17,22-24,42H2,(H,44,46)/p+1 ; 5NZ InChIKey InChI 1.03 ALUZXISFDWHPFA-UHFFFAOYSA-O 5NZ SMILES_CANONICAL CACTVS 3.385 "Nc1ccc2c3ccc(N)cc3[n+](CCCCCc4cnnn4CCNc5c6CCCCc6nc7ccccc57)c(c8ccccc8)c2c1" 5NZ SMILES CACTVS 3.385 "Nc1ccc2c3ccc(N)cc3[n+](CCCCCc4cnnn4CCNc5c6CCCCc6nc7ccccc57)c(c8ccccc8)c2c1" 5NZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1ccc(cc1)c2c3cc(ccc3c4ccc(cc4[n+]2CCCCCc5cnnn5CCNc6c7ccccc7nc8c6CCCC8)N)N" 5NZ SMILES "OpenEye OEToolkits" 2.0.4 "c1ccc(cc1)c2c3cc(ccc3c4ccc(cc4[n+]2CCCCCc5cnnn5CCNc6c7ccccc7nc8c6CCCC8)N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5NZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "6-phenyl-5-[5-[3-[2-(1,2,3,4-tetrahydroacridin-9-ylamino)ethyl]-1,2,3-triazol-4-yl]pentyl]phenanthridin-5-ium-3,8-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5NZ "Create component" 2015-10-29 EBI 5NZ "Initial release" 2016-01-20 RCSB #