data_5O2 # _chem_comp.id 5O2 _chem_comp.name "6-phenyl-5-[5-[1-[2-(1,2,3,4-tetrahydroacridin-9-ylamino)ethyl]-1,2,3-triazol-4-yl]pentyl]phenanthridin-5-ium-3,8-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C41 H43 N8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "anti TZ2PA5" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2015-10-29 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 647.834 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5O2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EHQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5O2 N2 N1 N 1 1 Y N N 37.518 24.205 6.423 5.815 -0.213 -0.855 N2 5O2 1 5O2 C8 C1 C 0 1 Y N N 36.747 25.454 8.560 6.066 2.040 -0.021 C8 5O2 2 5O2 C7 C2 C 0 1 Y N N 37.736 25.194 7.461 6.497 0.627 -0.112 C7 5O2 3 5O2 C6 C3 C 0 1 Y N N 38.521 24.044 5.324 6.138 -1.509 -0.991 C6 5O2 4 5O2 C5 C4 C 0 1 Y N N 38.332 23.090 4.208 5.360 -2.347 -1.804 C5 5O2 5 5O2 C19 C5 C 0 1 Y N N 40.520 27.552 8.591 9.531 0.573 2.103 C19 5O2 6 5O2 C18 C6 C 0 1 Y N N 41.492 27.349 7.603 9.908 -0.766 1.992 C18 5O2 7 5O2 N3 N2 N 0 1 N N N 40.759 28.432 9.583 10.280 1.439 2.902 N3 5O2 8 5O2 C11 C7 C 0 1 Y N N 34.952 25.970 10.672 5.271 4.687 0.151 C11 5O2 9 5O2 C12 C8 C 0 1 Y N N 35.203 26.954 9.706 5.331 3.910 1.294 C12 5O2 10 5O2 C13 C9 C 0 1 Y N N 36.084 26.691 8.644 5.727 2.591 1.215 C13 5O2 11 5O2 C14 C10 C 0 1 Y N N 39.035 25.957 7.531 7.680 0.181 0.628 C14 5O2 12 5O2 C15 C11 C 0 1 Y N N 39.322 26.846 8.579 8.423 1.051 1.426 C15 5O2 13 5O2 C16 C12 C 0 1 Y N N 40.062 25.767 6.451 8.071 -1.175 0.525 C16 5O2 14 5O2 C17 C13 C 0 1 Y N N 41.268 26.482 6.530 9.192 -1.632 1.216 C17 5O2 15 5O2 C10 C14 C 0 1 Y N N 35.627 24.743 10.593 5.607 4.147 -1.078 C10 5O2 16 5O2 C9 C15 C 0 1 Y N N 36.551 24.496 9.564 6.004 2.829 -1.170 C9 5O2 17 5O2 C4 C16 C 0 1 Y N N 39.812 24.764 5.366 7.260 -2.054 -0.324 C4 5O2 18 5O2 C3 C17 C 0 1 Y N N 40.775 24.532 4.366 7.579 -3.404 -0.478 C3 5O2 19 5O2 C2 C18 C 0 1 Y N N 40.541 23.621 3.319 6.808 -4.202 -1.273 C2 5O2 20 5O2 C1 C19 C 0 1 Y N N 39.321 22.929 3.223 5.698 -3.678 -1.939 C1 5O2 21 5O2 N1 N3 N 0 1 N N N 39.120 22.063 2.195 4.922 -4.510 -2.748 N1 5O2 22 5O2 C20 C20 C 0 1 N N N 36.151 23.656 6.228 4.637 0.288 -1.568 C20 5O2 23 5O2 C21 C21 C 0 1 N N N 35.900 22.159 6.443 3.387 0.048 -0.718 C21 5O2 24 5O2 C22 C22 C 0 1 N N N 34.951 21.806 7.600 2.145 0.461 -1.511 C22 5O2 25 5O2 C24 C23 C 0 1 N N N 33.843 22.803 7.953 0.895 0.221 -0.661 C24 5O2 26 5O2 C25 C24 C 0 1 N N N 32.534 22.044 8.134 -0.347 0.633 -1.454 C25 5O2 27 5O2 C26 C25 C 0 1 Y N N 31.972 22.118 9.541 -1.578 0.397 -0.617 C26 5O2 28 5O2 N4 N4 N 0 1 Y N N 31.528 21.049 10.252 -1.944 -0.752 -0.038 N4 5O2 29 5O2 N5 N5 N 0 1 Y N N 31.048 21.495 11.487 -3.050 -0.567 0.592 N5 5O2 30 5O2 N6 N6 N 0 1 Y N N 31.206 22.890 11.430 -3.438 0.653 0.459 N6 5O2 31 5O2 C27 C26 C 0 1 Y N N 31.750 23.273 10.282 -2.528 1.307 -0.300 C27 5O2 32 5O2 C28 C27 C 0 1 N N N 30.780 23.658 12.603 -4.654 1.235 1.034 C28 5O2 33 5O2 C29 C28 C 0 1 N N N 30.590 22.733 13.795 -5.867 0.409 0.603 C29 5O2 34 5O2 N7 N7 N 0 1 N N N 29.348 22.972 14.489 -7.086 0.992 1.180 N7 5O2 35 5O2 C30 C29 C 0 1 Y N N 28.180 22.398 14.127 -8.217 0.339 0.715 C30 5O2 36 5O2 C31 C30 C 0 1 Y N N 27.816 20.999 14.520 -8.664 -0.855 1.323 C31 5O2 37 5O2 C32 C31 C 0 1 Y N N 28.666 20.143 15.248 -7.988 -1.424 2.411 C32 5O2 38 5O2 C33 C32 C 0 1 Y N N 26.460 20.491 14.125 -9.826 -1.482 0.812 C33 5O2 39 5O2 C34 C33 C 0 1 Y N N 26.081 19.168 14.439 -10.279 -2.670 1.412 C34 5O2 40 5O2 C35 C34 C 0 1 Y N N 26.985 18.355 15.131 -9.599 -3.196 2.467 C35 5O2 41 5O2 C36 C35 C 0 1 Y N N 28.226 18.845 15.581 -8.456 -2.576 2.967 C36 5O2 42 5O2 N8 N8 N 0 1 Y N N 25.585 21.298 13.495 -10.467 -0.942 -0.225 N8 5O2 43 5O2 C37 C36 C 0 1 Y N N 25.822 22.589 13.162 -10.063 0.173 -0.811 C37 5O2 44 5O2 C38 C37 C 0 1 N N N 24.697 23.341 12.491 -10.877 0.665 -1.982 C38 5O2 45 5O2 C39 C38 C 0 1 Y N N 27.143 23.208 13.408 -8.943 0.848 -0.359 C39 5O2 46 5O2 C40 C39 C 0 1 N N N 27.426 24.629 12.968 -8.455 2.128 -0.984 C40 5O2 47 5O2 C41 C40 C 0 1 N N N 26.156 25.447 12.815 -9.055 2.308 -2.377 C41 5O2 48 5O2 C42 C41 C 0 1 N N N 25.053 24.756 12.038 -10.587 2.139 -2.256 C42 5O2 49 5O2 H1 H1 H 0 1 N N N 37.423 22.510 4.150 4.499 -1.952 -2.322 H1 5O2 50 5O2 H2 H2 H 0 1 N N N 42.434 27.873 7.672 10.777 -1.122 2.526 H2 5O2 51 5O2 H3 H3 H 0 1 N N N 39.973 28.460 10.201 11.059 1.109 3.378 H3 5O2 52 5O2 H4 H4 H 0 1 N N N 41.572 28.149 10.091 10.022 2.371 2.982 H4 5O2 53 5O2 H5 H5 H 0 1 N N N 34.246 26.155 11.469 4.961 5.719 0.218 H5 5O2 54 5O2 H6 H6 H 0 1 N N N 34.718 27.916 9.778 5.068 4.337 2.250 H6 5O2 55 5O2 H7 H7 H 0 1 N N N 36.253 27.443 7.888 5.773 1.985 2.108 H7 5O2 56 5O2 H8 H8 H 0 1 N N N 38.609 26.982 9.379 8.137 2.089 1.515 H8 5O2 57 5O2 H9 H9 H 0 1 N N N 42.020 26.362 5.764 9.492 -2.666 1.138 H9 5O2 58 5O2 H10 H10 H 0 1 N N N 35.434 23.979 11.332 5.558 4.758 -1.967 H10 5O2 59 5O2 H11 H11 H 0 1 N N N 37.108 23.571 9.547 6.266 2.408 -2.130 H11 5O2 60 5O2 H12 H12 H 0 1 N N N 41.714 25.065 4.403 8.436 -3.818 0.032 H12 5O2 61 5O2 H13 H13 H 0 1 N N N 41.309 23.451 2.579 7.060 -5.246 -1.389 H13 5O2 62 5O2 H14 H14 H 0 1 N N N 38.209 21.658 2.273 5.155 -5.447 -2.846 H14 5O2 63 5O2 H15 H15 H 0 1 N N N 39.193 22.554 1.327 4.149 -4.151 -3.213 H15 5O2 64 5O2 H16 H16 H 0 1 N N N 35.488 24.194 6.922 4.751 1.356 -1.752 H16 5O2 65 5O2 H17 H17 H 0 1 N N N 35.860 23.883 5.192 4.536 -0.237 -2.518 H17 5O2 66 5O2 H18 H18 H 0 1 N N N 35.471 21.751 5.516 3.319 -1.009 -0.462 H18 5O2 67 5O2 H19 H19 H 0 1 N N N 36.869 21.678 6.641 3.449 0.640 0.195 H19 5O2 68 5O2 H20 H20 H 0 1 N N N 34.464 20.853 7.344 2.212 1.518 -1.767 H20 5O2 69 5O2 H21 H21 H 0 1 N N N 35.569 21.672 8.500 2.083 -0.132 -2.424 H21 5O2 70 5O2 H22 H22 H 0 1 N N N 34.099 23.324 8.887 0.828 -0.837 -0.405 H22 5O2 71 5O2 H23 H23 H 0 1 N N N 33.735 23.537 7.141 0.957 0.813 0.252 H23 5O2 72 5O2 H24 H24 H 0 1 N N N 31.791 22.465 7.441 -0.280 1.690 -1.711 H24 5O2 73 5O2 H25 H25 H 0 1 N N N 32.709 20.987 7.886 -0.409 0.041 -2.367 H25 5O2 74 5O2 H26 H26 H 0 1 N N N 31.976 24.285 9.982 -2.556 2.346 -0.594 H26 5O2 75 5O2 H27 H27 H 0 1 N N N 31.547 24.409 12.844 -4.579 1.231 2.121 H27 5O2 76 5O2 H28 H28 H 0 1 N N N 29.829 24.164 12.380 -4.768 2.260 0.681 H28 5O2 77 5O2 H29 H29 H 0 1 N N N 30.600 21.692 13.439 -5.942 0.412 -0.484 H29 5O2 78 5O2 H30 H30 H 0 1 N N N 31.422 22.888 14.498 -5.753 -0.616 0.956 H30 5O2 79 5O2 H31 H31 H 0 1 N N N 29.506 22.700 15.438 -7.050 0.980 2.188 H31 5O2 80 5O2 H32 H32 H 0 1 N N N 29.648 20.478 15.549 -7.101 -0.952 2.806 H32 5O2 81 5O2 H33 H33 H 0 1 N N N 25.111 18.790 14.150 -11.164 -3.162 1.038 H33 5O2 82 5O2 H34 H34 H 0 1 N N N 26.724 17.325 15.325 -9.952 -4.109 2.925 H34 5O2 83 5O2 H35 H35 H 0 1 N N N 28.853 18.214 16.193 -7.935 -3.014 3.805 H35 5O2 84 5O2 H36 H36 H 0 1 N N N 23.860 23.409 13.201 -10.626 0.079 -2.866 H36 5O2 85 5O2 H37 H37 H 0 1 N N N 24.382 22.768 11.607 -11.937 0.544 -1.758 H37 5O2 86 5O2 H38 H38 H 0 1 N N N 27.949 24.603 12.001 -8.746 2.969 -0.355 H38 5O2 87 5O2 H39 H39 H 0 1 N N N 28.069 25.111 13.719 -7.368 2.098 -1.063 H39 5O2 88 5O2 H40 H40 H 0 1 N N N 26.410 26.382 12.293 -8.828 3.307 -2.749 H40 5O2 89 5O2 H41 H41 H 0 1 N N N 25.774 25.680 13.820 -8.642 1.561 -3.055 H41 5O2 90 5O2 H42 H42 H 0 1 N N N 25.366 24.703 10.985 -11.061 2.437 -3.192 H42 5O2 91 5O2 H43 H43 H 0 1 N N N 24.146 25.373 12.120 -10.972 2.747 -1.437 H43 5O2 92 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5O2 N1 C1 SING N N 1 5O2 C1 C2 DOUB Y N 2 5O2 C1 C5 SING Y N 3 5O2 C2 C3 SING Y N 4 5O2 C5 C6 DOUB Y N 5 5O2 C3 C4 DOUB Y N 6 5O2 C6 C4 SING Y N 7 5O2 C6 N2 SING Y N 8 5O2 C4 C16 SING Y N 9 5O2 C20 N2 SING N N 10 5O2 C20 C21 SING N N 11 5O2 N2 C7 DOUB Y N 12 5O2 C21 C22 SING N N 13 5O2 C16 C17 DOUB Y N 14 5O2 C16 C14 SING Y N 15 5O2 C17 C18 SING Y N 16 5O2 C7 C14 SING Y N 17 5O2 C7 C8 SING N N 18 5O2 C14 C15 DOUB Y N 19 5O2 C22 C24 SING N N 20 5O2 C18 C19 DOUB Y N 21 5O2 C24 C25 SING N N 22 5O2 C25 C26 SING N N 23 5O2 C8 C13 DOUB Y N 24 5O2 C8 C9 SING Y N 25 5O2 C15 C19 SING Y N 26 5O2 C19 N3 SING N N 27 5O2 C13 C12 SING Y N 28 5O2 C26 N4 SING Y N 29 5O2 C26 C27 DOUB Y N 30 5O2 C9 C10 DOUB Y N 31 5O2 C12 C11 DOUB Y N 32 5O2 N4 N5 DOUB Y N 33 5O2 C27 N6 SING Y N 34 5O2 C10 C11 SING Y N 35 5O2 N6 N5 SING Y N 36 5O2 N6 C28 SING N N 37 5O2 C42 C38 SING N N 38 5O2 C42 C41 SING N N 39 5O2 C38 C37 SING N N 40 5O2 C28 C29 SING N N 41 5O2 C41 C40 SING N N 42 5O2 C40 C39 SING N N 43 5O2 C37 C39 DOUB Y N 44 5O2 C37 N8 SING Y N 45 5O2 C39 C30 SING Y N 46 5O2 N8 C33 DOUB Y N 47 5O2 C29 N7 SING N N 48 5O2 C33 C34 SING Y N 49 5O2 C33 C31 SING Y N 50 5O2 C30 N7 SING N N 51 5O2 C30 C31 DOUB Y N 52 5O2 C34 C35 DOUB Y N 53 5O2 C31 C32 SING Y N 54 5O2 C35 C36 SING Y N 55 5O2 C32 C36 DOUB Y N 56 5O2 C5 H1 SING N N 57 5O2 C18 H2 SING N N 58 5O2 N3 H3 SING N N 59 5O2 N3 H4 SING N N 60 5O2 C11 H5 SING N N 61 5O2 C12 H6 SING N N 62 5O2 C13 H7 SING N N 63 5O2 C15 H8 SING N N 64 5O2 C17 H9 SING N N 65 5O2 C10 H10 SING N N 66 5O2 C9 H11 SING N N 67 5O2 C3 H12 SING N N 68 5O2 C2 H13 SING N N 69 5O2 N1 H14 SING N N 70 5O2 N1 H15 SING N N 71 5O2 C20 H16 SING N N 72 5O2 C20 H17 SING N N 73 5O2 C21 H18 SING N N 74 5O2 C21 H19 SING N N 75 5O2 C22 H20 SING N N 76 5O2 C22 H21 SING N N 77 5O2 C24 H22 SING N N 78 5O2 C24 H23 SING N N 79 5O2 C25 H24 SING N N 80 5O2 C25 H25 SING N N 81 5O2 C27 H26 SING N N 82 5O2 C28 H27 SING N N 83 5O2 C28 H28 SING N N 84 5O2 C29 H29 SING N N 85 5O2 C29 H30 SING N N 86 5O2 N7 H31 SING N N 87 5O2 C32 H32 SING N N 88 5O2 C34 H33 SING N N 89 5O2 C35 H34 SING N N 90 5O2 C36 H35 SING N N 91 5O2 C38 H36 SING N N 92 5O2 C38 H37 SING N N 93 5O2 C40 H38 SING N N 94 5O2 C40 H39 SING N N 95 5O2 C41 H40 SING N N 96 5O2 C41 H41 SING N N 97 5O2 C42 H42 SING N N 98 5O2 C42 H43 SING N N 99 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5O2 InChI InChI 1.03 "InChI=1S/C41H42N8/c42-29-18-20-32-33-21-19-30(43)26-39(33)49(41(36(32)25-29)28-11-3-1-4-12-28)23-10-2-5-13-31-27-48(47-46-31)24-22-44-40-34-14-6-8-16-37(34)45-38-17-9-7-15-35(38)40/h1,3-4,6,8,11-12,14,16,18-21,25-27,43H,2,5,7,9-10,13,15,17,22-24,42H2,(H,44,45)/p+1" 5O2 InChIKey InChI 1.03 XIORYVGXAQRYQA-UHFFFAOYSA-O 5O2 SMILES_CANONICAL CACTVS 3.385 "Nc1ccc2c3ccc(N)cc3[n+](CCCCCc4cn(CCNc5c6CCCCc6nc7ccccc57)nn4)c(c8ccccc8)c2c1" 5O2 SMILES CACTVS 3.385 "Nc1ccc2c3ccc(N)cc3[n+](CCCCCc4cn(CCNc5c6CCCCc6nc7ccccc57)nn4)c(c8ccccc8)c2c1" 5O2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1ccc(cc1)c2c3cc(ccc3c4ccc(cc4[n+]2CCCCCc5cn(nn5)CCNc6c7ccccc7nc8c6CCCC8)N)N" 5O2 SMILES "OpenEye OEToolkits" 2.0.4 "c1ccc(cc1)c2c3cc(ccc3c4ccc(cc4[n+]2CCCCCc5cn(nn5)CCNc6c7ccccc7nc8c6CCCC8)N)N" # _pdbx_chem_comp_identifier.comp_id 5O2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.4 _pdbx_chem_comp_identifier.identifier "6-phenyl-5-[5-[1-[2-(1,2,3,4-tetrahydroacridin-9-ylamino)ethyl]-1,2,3-triazol-4-yl]pentyl]phenanthridin-5-ium-3,8-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5O2 "Create component" 2015-10-29 EBI 5O2 "Initial release" 2016-01-20 RCSB 5O2 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5O2 _pdbx_chem_comp_synonyms.name "anti TZ2PA5" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##