data_5OC # _chem_comp.id 5OC _chem_comp.name ;2'-deoxy-5-hydroxycytidine 5'-(dihydrogen phosphate) ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H14 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-08-15 _chem_comp.pdbx_modified_date 2011-11-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.197 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5OC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3TAB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5OC P P P 0 1 N N N -69.495 14.529 42.122 4.274 -1.050 -0.066 P 5OC 1 5OC N1 N1 N 0 1 N N N -73.031 10.288 43.484 -2.284 0.307 -0.415 N1 5OC 2 5OC C2 C2 C 0 1 N N N -73.661 9.191 44.081 -2.286 -0.148 0.852 C2 5OC 3 5OC O2 O2 O 0 1 N N N -74.883 9.046 43.928 -1.328 0.082 1.572 O2 5OC 4 5OC N3 N3 N 0 1 N N N -72.924 8.317 44.804 -3.315 -0.843 1.333 N3 5OC 5 5OC C4 C4 C 0 1 N N N -71.610 8.509 44.946 -4.370 -1.107 0.574 C4 5OC 6 5OC N4 N4 N 0 1 N N N -70.923 7.619 45.663 -5.427 -1.827 1.084 N4 5OC 7 5OC C5 C5 C 0 1 N N N -70.944 9.624 44.358 -4.403 -0.645 -0.761 C5 5OC 8 5OC O5 O5 O 0 1 N N N -69.644 9.826 44.489 -5.477 -0.905 -1.557 O5 5OC 9 5OC C6 C6 C 0 1 N N N -71.687 10.483 43.646 -3.347 0.062 -1.237 C6 5OC 10 5OC "C1'" "C1'" C 0 1 N N R -73.852 11.236 42.714 -1.140 1.074 -0.912 "C1'" 5OC 11 5OC "C2'" "C2'" C 0 1 N N N -74.517 12.309 43.575 -1.025 2.404 -0.141 "C2'" 5OC 12 5OC "C3'" "C3'" C 0 1 N N S -73.649 13.528 43.337 0.388 2.356 0.489 "C3'" 5OC 13 5OC "O3'" "O3'" O 0 1 N N N -74.389 14.735 43.513 1.029 3.631 0.400 "O3'" 5OC 14 5OC "C4'" "C4'" C 0 1 N N R -73.232 13.333 41.889 1.107 1.313 -0.404 "C4'" 5OC 15 5OC "O4'" "O4'" O 0 1 N N N -73.006 11.911 41.783 0.076 0.342 -0.684 "O4'" 5OC 16 5OC "C5'" "C5'" C 0 1 N N N -72.005 14.104 41.462 2.270 0.667 0.352 "C5'" 5OC 17 5OC "O5'" "O5'" O 0 1 N N N -70.949 13.959 42.430 2.985 -0.203 -0.528 "O5'" 5OC 18 5OC OP1 OP1 O 0 1 N N N -69.684 15.952 41.749 5.471 -0.043 0.312 OP1 5OC 19 5OC OP3 OP3 O 0 1 N N N -68.603 14.180 43.256 3.927 -1.870 1.116 OP3 5OC 20 5OC HN4 HN4 H 0 1 N N N -71.393 6.838 46.074 -5.401 -2.142 2.001 HN4 5OC 21 5OC HN4A HN4A H 0 0 N N N -69.938 7.732 45.789 -6.197 -2.018 0.527 HN4A 5OC 22 5OC H6 H6 H 0 1 N N N -71.217 11.343 43.193 -3.347 0.426 -2.254 H6 5OC 23 5OC "H1'" "H1'" H 0 1 N N N -74.646 10.647 42.232 -1.261 1.272 -1.977 "H1'" 5OC 24 5OC "H2'" "H2'" H 0 1 N N N -75.559 12.487 43.269 -1.110 3.249 -0.824 "H2'" 5OC 25 5OC "H2'A" "H2'A" H 0 0 N N N -74.534 12.024 44.637 -1.789 2.462 0.634 "H2'A" 5OC 26 5OC "H3'" "H3'" H 0 1 N N N -72.803 13.618 44.034 0.342 2.018 1.523 "H3'" 5OC 27 5OC "HO3'" "HO3'" H 0 0 N N N -73.821 15.481 43.358 0.565 4.338 0.870 "HO3'" 5OC 28 5OC "H4'" "H4'" H 0 1 N N N -74.012 13.722 41.218 1.460 1.775 -1.326 "H4'" 5OC 29 5OC "H5'" "H5'" H 0 1 N N N -71.658 13.718 40.492 2.940 1.444 0.720 "H5'" 5OC 30 5OC "H5'A" "H5'A" H 0 0 N N N -72.264 15.169 41.370 1.882 0.093 1.194 "H5'A" 5OC 31 5OC HOP1 HOP1 H 0 0 N N N -69.170 16.503 42.328 5.751 0.526 -0.418 HOP1 5OC 32 5OC OP2 OP2 O 0 1 N Y N -68.094 15.240 41.421 4.741 -2.013 -1.269 OP2 5OC 33 5OC H13 H13 H 0 1 N N N -69.398 10.618 44.026 -6.174 -1.415 -1.122 H13 5OC 34 5OC HOP2 HOP2 H 0 0 N Y N -67.355 15.130 42.008 5.515 -2.555 -1.060 HOP2 5OC 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5OC P "O5'" SING N N 1 5OC P OP3 DOUB N N 2 5OC N1 C6 SING N N 3 5OC N1 C2 SING N N 4 5OC C2 N3 SING N N 5 5OC O2 C2 DOUB N N 6 5OC N3 C4 DOUB N N 7 5OC C4 N4 SING N N 8 5OC N4 HN4 SING N N 9 5OC N4 HN4A SING N N 10 5OC C5 C4 SING N N 11 5OC C5 O5 SING N N 12 5OC C6 C5 DOUB N N 13 5OC C6 H6 SING N N 14 5OC "C1'" N1 SING N N 15 5OC "C1'" "C2'" SING N N 16 5OC "C1'" "H1'" SING N N 17 5OC "C2'" "H2'" SING N N 18 5OC "C2'" "H2'A" SING N N 19 5OC "C3'" "C2'" SING N N 20 5OC "C3'" "O3'" SING N N 21 5OC "C3'" "H3'" SING N N 22 5OC "O3'" "HO3'" SING N N 23 5OC "C4'" "C3'" SING N N 24 5OC "C4'" "H4'" SING N N 25 5OC "O4'" "C1'" SING N N 26 5OC "O4'" "C4'" SING N N 27 5OC "C5'" "C4'" SING N N 28 5OC "C5'" "O5'" SING N N 29 5OC "C5'" "H5'" SING N N 30 5OC "C5'" "H5'A" SING N N 31 5OC OP1 P SING N N 32 5OC OP1 HOP1 SING N N 33 5OC P OP2 SING N N 34 5OC O5 H13 SING N N 35 5OC OP2 HOP2 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5OC SMILES ACDLabs 12.01 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C(O)=C1)CC2O" 5OC InChI InChI 1.03 "InChI=1S/C9H14N3O8P/c10-8-5(14)2-12(9(15)11-8)7-1-4(13)6(20-7)3-19-21(16,17)18/h2,4,6-7,13-14H,1,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6+,7+/m0/s1" 5OC InChIKey InChI 1.03 IHMAXICTBCXOER-UBKIQSJTSA-N 5OC SMILES_CANONICAL CACTVS 3.370 "NC1=NC(=O)N(C=C1O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2" 5OC SMILES CACTVS 3.370 "NC1=NC(=O)N(C=C1O)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2" 5OC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)O)COP(=O)(O)O)O" 5OC SMILES "OpenEye OEToolkits" 1.7.2 "C1C(C(OC1N2C=C(C(=NC2=O)N)O)COP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5OC "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-5-hydroxycytidine 5'-(dihydrogen phosphate) ; 5OC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,5R)-5-(4-azanyl-5-oxidanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5OC "Create component" 2011-08-15 RCSB #