data_5VN # _chem_comp.id 5VN _chem_comp.name Caulophyllogenin _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H48 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-12-09 _chem_comp.pdbx_modified_date 2016-06-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.699 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5VN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5F9B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5VN C21 C1 C 0 1 N N N 38.688 -9.672 40.073 0.723 0.895 -1.591 C21 5VN 1 5VN C20 C2 C 0 1 N N S 37.673 -10.058 41.098 0.879 -0.247 -0.570 C20 5VN 2 5VN C34 C3 C 0 1 N N N 37.910 -11.518 41.327 1.638 -1.370 -1.252 C34 5VN 3 5VN C31 C4 C 0 1 N N R 39.243 -11.804 42.118 3.139 -1.116 -1.355 C31 5VN 4 5VN O33 O1 O 0 1 N N N 40.467 -11.386 41.474 3.415 -0.133 -2.345 O33 5VN 5 5VN C27 C5 C 0 1 N N R 38.997 -11.168 43.426 3.753 -0.764 -0.011 C27 5VN 6 5VN C28 C6 C 0 1 N N N 37.721 -11.911 43.785 3.502 -1.918 0.947 C28 5VN 7 5VN O30 O2 O 0 1 N N N 36.637 -11.281 43.875 3.980 -3.140 0.664 O30 5VN 8 5VN O29 O3 O 0 1 N N N 37.842 -13.148 43.807 2.873 -1.736 1.962 O29 5VN 9 5VN C35 C7 C 0 1 N N N 40.084 -11.447 44.478 5.264 -0.606 -0.118 C35 5VN 10 5VN C36 C8 C 0 1 N N N 41.339 -10.598 44.273 5.679 0.670 -0.829 C36 5VN 11 5VN C37 C9 C 0 1 N N N 40.972 -9.122 44.322 5.032 1.906 -0.211 C37 5VN 12 5VN C38 C10 C 0 1 N N N 40.342 -8.782 45.657 5.582 2.151 1.195 C38 5VN 13 5VN C39 C11 C 0 1 N N N 42.194 -8.228 44.210 5.366 3.126 -1.087 C39 5VN 14 5VN C40 C12 C 0 1 N N N 40.036 -8.836 43.173 3.513 1.744 -0.161 C40 5VN 15 5VN C25 C13 C 0 1 N N S 38.744 -9.653 43.320 3.117 0.483 0.583 C25 5VN 16 5VN C22 C14 C 0 1 N N N 37.854 -9.299 42.294 1.608 0.322 0.609 C22 5VN 17 5VN C23 C15 C 0 1 N N N 37.213 -8.080 42.523 1.013 0.711 1.706 C23 5VN 18 5VN C24 C16 C 0 1 N N N 36.307 -7.535 41.631 -0.459 0.569 1.969 C24 5VN 19 5VN C14 C17 C 0 1 N N R 36.586 -8.143 40.259 -1.204 0.397 0.645 C14 5VN 20 5VN C16 C18 C 0 1 N N R 36.372 -9.702 40.349 -0.543 -0.697 -0.178 C16 5VN 21 5VN C17 C19 C 0 1 N N N 35.099 -10.210 41.079 -0.395 -1.976 0.662 C17 5VN 22 5VN C18 C20 C 0 1 N N N 36.423 -10.312 38.907 -1.342 -1.031 -1.436 C18 5VN 23 5VN C19 C21 C 0 1 N N N 35.585 -9.537 37.876 -2.808 -1.319 -1.074 C19 5VN 24 5VN C1 C22 C 0 1 N N R 36.124 -8.104 37.820 -3.376 -0.041 -0.461 C1 5VN 25 5VN C3 C23 C 0 1 N N R 35.845 -7.395 39.175 -2.706 0.220 0.882 C3 5VN 26 5VN C4 C24 C 0 1 N N N 34.402 -7.283 39.623 -2.983 -0.880 1.899 C4 5VN 27 5VN C5 C25 C 0 1 N N N 36.381 -6.006 39.067 -3.252 1.541 1.451 C5 5VN 28 5VN C6 C26 C 0 1 N N N 35.651 -5.272 37.952 -4.764 1.427 1.633 C6 5VN 29 5VN C7 C27 C 0 1 N N S 36.092 -5.870 36.657 -5.438 1.214 0.285 C7 5VN 30 5VN O9 O4 O 0 1 N N N 35.536 -5.139 35.561 -6.848 1.036 0.485 O9 5VN 31 5VN C10 C28 C 0 1 N N R 35.626 -7.307 36.576 -4.887 -0.000 -0.460 C10 5VN 32 5VN C11 C29 C 0 1 N N N 34.113 -7.333 36.419 -5.516 -1.279 0.090 C11 5VN 33 5VN C12 C30 C 0 1 N N N 36.238 -7.898 35.321 -5.366 0.138 -1.926 C12 5VN 34 5VN O13 O5 O 0 1 N N N 35.709 -7.244 34.165 -6.794 0.157 -1.961 O13 5VN 35 5VN H1 H1 H 0 1 N N N 39.697 -9.869 40.463 0.192 0.528 -2.469 H1 5VN 36 5VN H2 H2 H 0 1 N N N 38.527 -10.261 39.158 0.158 1.711 -1.140 H2 5VN 37 5VN H3 H3 H 0 1 N N N 38.587 -8.601 39.842 1.709 1.256 -1.886 H3 5VN 38 5VN H4 H4 H 0 1 N N N 37.066 -11.925 41.903 1.481 -2.339 -0.783 H4 5VN 39 5VN H5 H5 H 0 1 N N N 37.965 -12.022 40.351 1.247 -1.468 -2.284 H5 5VN 40 5VN H6 H6 H 0 1 N N N 39.290 -12.892 42.275 3.602 -2.059 -1.698 H6 5VN 41 5VN H7 H7 H 0 1 N N N 41.207 -11.602 42.029 3.116 -0.373 -3.232 H7 5VN 42 5VN H8 H8 H 0 1 N N N 35.919 -11.897 43.963 3.795 -3.843 1.303 H8 5VN 43 5VN H9 H9 H 0 1 N N N 39.672 -11.230 45.475 5.694 -0.629 0.888 H9 5VN 44 5VN H10 H10 H 0 1 N N N 40.365 -12.509 44.420 5.670 -1.469 -0.666 H10 5VN 45 5VN H11 H11 H 0 1 N N N 41.783 -10.832 43.294 6.772 0.776 -0.754 H11 5VN 46 5VN H12 H12 H 0 1 N N N 42.065 -10.821 45.068 5.439 0.616 -1.888 H12 5VN 47 5VN H13 H13 H 0 1 N N N 41.054 -9.004 46.466 6.659 2.304 1.142 H13 5VN 48 5VN H14 H14 H 0 1 N N N 40.084 -7.713 45.679 5.109 3.036 1.621 H14 5VN 49 5VN H15 H15 H 0 1 N N N 39.431 -9.382 45.796 5.368 1.286 1.824 H15 5VN 50 5VN H16 H16 H 0 1 N N N 42.878 -8.434 45.046 4.978 2.968 -2.093 H16 5VN 51 5VN H17 H17 H 0 1 N N N 42.708 -8.428 43.258 4.909 4.018 -0.657 H17 5VN 52 5VN H18 H18 H 0 1 N N N 41.881 -7.174 44.244 6.447 3.257 -1.130 H18 5VN 53 5VN H19 H19 H 0 1 N N N 40.530 -9.105 42.228 3.088 2.619 0.350 H19 5VN 54 5VN H20 H20 H 0 1 N N N 39.788 -7.764 43.165 3.138 1.737 -1.185 H20 5VN 55 5VN H21 H21 H 0 1 N N N 38.294 -9.349 44.277 3.453 0.569 1.634 H21 5VN 56 5VN H22 H22 H 0 1 N N N 37.433 -7.541 43.433 1.633 1.136 2.485 H22 5VN 57 5VN H23 H23 H 0 1 N N N 36.432 -6.443 41.590 -0.615 -0.268 2.641 H23 5VN 58 5VN H24 H24 H 0 1 N N N 35.281 -7.775 41.946 -0.807 1.478 2.468 H24 5VN 59 5VN H25 H25 H 0 1 N N N 37.659 -7.996 40.066 -1.103 1.358 0.098 H25 5VN 60 5VN H26 H26 H 0 1 N N N 35.061 -9.783 42.092 -1.382 -2.382 0.882 H26 5VN 61 5VN H27 H27 H 0 1 N N N 34.206 -9.900 40.517 0.184 -2.712 0.104 H27 5VN 62 5VN H28 H28 H 0 1 N N N 35.128 -11.308 41.145 0.117 -1.741 1.595 H28 5VN 63 5VN H29 H29 H 0 1 N N N 36.047 -11.345 38.954 -1.350 -0.214 -2.146 H29 5VN 64 5VN H30 H30 H 0 1 N N N 37.470 -10.318 38.569 -0.919 -1.914 -1.912 H30 5VN 65 5VN H31 H31 H 0 1 N N N 34.529 -9.528 38.182 -3.335 -1.563 -1.999 H31 5VN 66 5VN H32 H32 H 0 1 N N N 35.676 -10.010 36.887 -2.871 -2.159 -0.400 H32 5VN 67 5VN H33 H33 H 0 1 N N N 37.217 -8.179 37.725 -3.041 0.786 -1.133 H33 5VN 68 5VN H34 H34 H 0 1 N N N 34.357 -6.762 40.591 -2.790 -1.852 1.445 H34 5VN 69 5VN H35 H35 H 0 1 N N N 33.829 -6.716 38.875 -2.332 -0.747 2.763 H35 5VN 70 5VN H36 H36 H 0 1 N N N 33.972 -8.290 39.728 -4.024 -0.827 2.216 H36 5VN 71 5VN H37 H37 H 0 1 N N N 37.457 -6.044 38.840 -2.781 1.729 2.415 H37 5VN 72 5VN H38 H38 H 0 1 N N N 36.226 -5.477 40.019 -3.020 2.350 0.762 H38 5VN 73 5VN H39 H39 H 0 1 N N N 35.905 -4.202 37.977 -5.017 0.626 2.319 H39 5VN 74 5VN H40 H40 H 0 1 N N N 34.564 -5.394 38.071 -5.134 2.364 2.072 H40 5VN 75 5VN H41 H41 H 0 1 N N N 37.191 -5.849 36.605 -5.290 2.106 -0.333 H41 5VN 76 5VN H42 H42 H 0 1 N N N 35.824 -4.235 35.604 -7.283 1.789 0.909 H42 5VN 77 5VN H43 H43 H 0 1 N N N 33.643 -6.908 37.318 -6.578 -1.296 -0.158 H43 5VN 78 5VN H44 H44 H 0 1 N N N 33.825 -6.738 35.540 -5.026 -2.145 -0.354 H44 5VN 79 5VN H45 H45 H 0 1 N N N 33.776 -8.372 36.285 -5.395 -1.307 1.173 H45 5VN 80 5VN H46 H46 H 0 1 N N N 36.003 -8.972 35.272 -4.980 1.066 -2.349 H46 5VN 81 5VN H47 H47 H 0 1 N N N 37.329 -7.762 35.349 -4.999 -0.706 -2.510 H47 5VN 82 5VN H48 H48 H 0 1 N N N 36.097 -7.619 33.383 -7.165 0.241 -2.850 H48 5VN 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5VN O13 C12 SING N N 1 5VN C12 C10 SING N N 2 5VN O9 C7 SING N N 3 5VN C11 C10 SING N N 4 5VN C10 C7 SING N N 5 5VN C10 C1 SING N N 6 5VN C7 C6 SING N N 7 5VN C1 C19 SING N N 8 5VN C1 C3 SING N N 9 5VN C19 C18 SING N N 10 5VN C6 C5 SING N N 11 5VN C18 C16 SING N N 12 5VN C5 C3 SING N N 13 5VN C3 C4 SING N N 14 5VN C3 C14 SING N N 15 5VN C21 C20 SING N N 16 5VN C14 C16 SING N N 17 5VN C14 C24 SING N N 18 5VN C16 C17 SING N N 19 5VN C16 C20 SING N N 20 5VN C20 C34 SING N N 21 5VN C20 C22 SING N N 22 5VN C34 C31 SING N N 23 5VN O33 C31 SING N N 24 5VN C24 C23 SING N N 25 5VN C31 C27 SING N N 26 5VN C22 C23 DOUB N N 27 5VN C22 C25 SING N N 28 5VN C40 C25 SING N N 29 5VN C40 C37 SING N N 30 5VN C25 C27 SING N N 31 5VN C27 C28 SING N N 32 5VN C27 C35 SING N N 33 5VN C28 O29 DOUB N N 34 5VN C28 O30 SING N N 35 5VN C39 C37 SING N N 36 5VN C36 C37 SING N N 37 5VN C36 C35 SING N N 38 5VN C37 C38 SING N N 39 5VN C21 H1 SING N N 40 5VN C21 H2 SING N N 41 5VN C21 H3 SING N N 42 5VN C34 H4 SING N N 43 5VN C34 H5 SING N N 44 5VN C31 H6 SING N N 45 5VN O33 H7 SING N N 46 5VN O30 H8 SING N N 47 5VN C35 H9 SING N N 48 5VN C35 H10 SING N N 49 5VN C36 H11 SING N N 50 5VN C36 H12 SING N N 51 5VN C38 H13 SING N N 52 5VN C38 H14 SING N N 53 5VN C38 H15 SING N N 54 5VN C39 H16 SING N N 55 5VN C39 H17 SING N N 56 5VN C39 H18 SING N N 57 5VN C40 H19 SING N N 58 5VN C40 H20 SING N N 59 5VN C25 H21 SING N N 60 5VN C23 H22 SING N N 61 5VN C24 H23 SING N N 62 5VN C24 H24 SING N N 63 5VN C14 H25 SING N N 64 5VN C17 H26 SING N N 65 5VN C17 H27 SING N N 66 5VN C17 H28 SING N N 67 5VN C18 H29 SING N N 68 5VN C18 H30 SING N N 69 5VN C19 H31 SING N N 70 5VN C19 H32 SING N N 71 5VN C1 H33 SING N N 72 5VN C4 H34 SING N N 73 5VN C4 H35 SING N N 74 5VN C4 H36 SING N N 75 5VN C5 H37 SING N N 76 5VN C5 H38 SING N N 77 5VN C6 H39 SING N N 78 5VN C6 H40 SING N N 79 5VN C7 H41 SING N N 80 5VN O9 H42 SING N N 81 5VN C11 H43 SING N N 82 5VN C11 H44 SING N N 83 5VN C11 H45 SING N N 84 5VN C12 H46 SING N N 85 5VN C12 H47 SING N N 86 5VN O13 H48 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5VN InChI InChI 1.03 "InChI=1S/C30H48O5/c1-25(2)13-14-30(24(34)35)19(15-25)18-7-8-21-26(3)11-10-22(32)27(4,17-31)20(26)9-12-28(21,5)29(18,6)16-23(30)33/h7,19-23,31-33H,8-17H2,1-6H3,(H,34,35)/t19-,20+,21+,22-,23+,26-,27-,28+,29+,30+/m0/s1" 5VN InChIKey InChI 1.03 FABOBEOYNMHSHB-UAWZMHPWSA-N 5VN SMILES_CANONICAL CACTVS 3.385 "CC1(C)CC[C@@]2([C@H](O)C[C@]3(C)C(=CC[C@@H]4[C@@]5(C)CC[C@H](O)[C@@](C)(CO)[C@@H]5CC[C@@]34C)[C@@H]2C1)C(O)=O" 5VN SMILES CACTVS 3.385 "CC1(C)CC[C]2([CH](O)C[C]3(C)C(=CC[CH]4[C]5(C)CC[CH](O)[C](C)(CO)[CH]5CC[C]34C)[CH]2C1)C(O)=O" 5VN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@]12CC[C@@H]([C@@]([C@@H]1CC[C@@]3([C@@H]2CC=C4[C@]3(C[C@H]([C@@]5([C@H]4CC(CC5)(C)C)C(=O)O)O)C)C)(C)CO)O" 5VN SMILES "OpenEye OEToolkits" 2.0.4 "CC1(CCC2(C(C1)C3=CCC4C5(CCC(C(C5CCC4(C3(CC2O)C)C)(C)CO)O)C)C(=O)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5VN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(4~{a}~{R},5~{R},6~{a}~{R},6~{a}~{S},6~{b}~{R},8~{a}~{R},9~{R},10~{S},12~{a}~{R},14~{b}~{S})-9-(hydroxymethyl)-2,2,6~{a},6~{b},9,12~{a}-hexamethyl-5,10-bis(oxidanyl)-1,3,4,5,6,6~{a},7,8,8~{a},10,11,12,13,14~{b}-tetradecahydropicene-4~{a}-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5VN "Create component" 2015-12-09 EBI 5VN "Initial release" 2016-06-29 RCSB #