data_5ZN # _chem_comp.id 5ZN _chem_comp.name "2-chloro-4-[4-(2,6-dioxo-1,2,5,6-tetrahydropyrimidine-4-carbonyl)piperazin-1-yl]benzaldehyde" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H15 Cl N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-29 _chem_comp.pdbx_modified_date 2021-11-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 362.768 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5ZN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RMT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5ZN C8 C1 C 0 1 N N N 107.054 -1.061 110.297 0.731 2.199 0.172 C8 5ZN 1 5ZN C9 C2 C 0 1 N N N 108.463 -1.510 110.674 -0.634 2.722 -0.288 C9 5ZN 2 5ZN C1 C3 C 0 1 N N N 110.461 -3.740 108.304 -3.693 0.475 0.142 C1 5ZN 3 5ZN C10 C4 C 0 1 Y N N 104.764 -1.968 110.420 2.460 0.716 -0.431 C10 5ZN 4 5ZN C11 C5 C 0 1 Y N N 104.274 -1.085 111.419 3.488 1.656 -0.452 C11 5ZN 5 5ZN C12 C6 C 0 1 Y N N 102.922 -0.872 111.572 4.769 1.281 -0.169 C12 5ZN 6 5ZN C13 C7 C 0 1 Y N N 102.457 -2.375 109.782 4.022 -1.002 0.166 C13 5ZN 7 5ZN C14 C8 C 0 1 Y N N 103.806 -2.615 109.597 2.733 -0.614 -0.120 C14 5ZN 8 5ZN C16 C9 C 0 1 N N N 111.636 -5.855 108.490 -4.246 -1.583 -0.763 C16 5ZN 9 5ZN C19 C10 C 0 1 N N N 110.663 -5.130 106.326 -5.829 -0.812 0.786 C19 5ZN 10 5ZN C2 C11 C 0 1 N N N 110.051 -2.553 109.138 -2.769 1.635 0.233 C2 5ZN 11 5ZN C21 C12 C 0 1 N N N 110.199 -3.923 106.987 -4.962 0.421 0.970 C21 5ZN 12 5ZN C22 C13 C 0 1 Y N N 101.957 -1.503 110.766 5.056 -0.054 0.144 C22 5ZN 13 5ZN C23 C14 C 0 1 N N N 100.540 -1.231 110.985 6.432 -0.459 0.449 C23 5ZN 14 5ZN C5 C15 C 0 1 N N N 107.976 -3.767 109.885 -1.149 0.398 -1.130 C5 5ZN 15 5ZN C6 C16 C 0 1 N N N 106.589 -3.326 109.440 0.236 -0.034 -0.637 C6 5ZN 16 5ZN N15 N1 N 0 1 N N N 111.155 -4.681 109.023 -3.440 -0.522 -0.653 N15 5ZN 17 5ZN N18 N2 N 0 1 N N N 111.359 -6.018 107.147 -5.388 -1.748 -0.084 N18 5ZN 18 5ZN N4 N3 N 0 1 N N N 108.904 -2.633 109.841 -1.566 1.587 -0.370 N4 5ZN 19 5ZN N7 N4 N 0 1 N N N 106.116 -2.193 110.256 1.158 1.108 -0.715 N7 5ZN 20 5ZN O17 O1 O 0 1 N N N 112.254 -6.675 109.158 -3.918 -2.462 -1.536 O17 5ZN 21 5ZN O20 O2 O 0 1 N N N 110.484 -5.400 105.135 -6.865 -0.955 1.400 O20 5ZN 22 5ZN O24 O3 O 0 1 N N N 100.110 -0.542 111.913 7.325 0.363 0.429 O24 5ZN 23 5ZN O3 O4 O 0 1 N N N 110.805 -1.567 109.137 -3.099 2.627 0.852 O3 5ZN 24 5ZN CL25 CL1 CL 0 0 N N N 101.335 -3.222 108.711 4.367 -2.658 0.555 CL25 5ZN 25 5ZN H1 H1 H 0 1 N N N 107.084 -0.587 109.305 1.462 3.006 0.133 H1 5ZN 26 5ZN H2 H2 H 0 1 N N N 106.701 -0.332 111.041 0.653 1.828 1.194 H2 5ZN 27 5ZN H3 H3 H 0 1 N N N 108.470 -1.822 111.729 -1.007 3.451 0.431 H3 5ZN 28 5ZN H4 H4 H 0 1 N N N 109.157 -0.667 110.536 -0.535 3.191 -1.267 H4 5ZN 29 5ZN H5 H5 H 0 1 N N N 104.971 -0.574 112.067 3.270 2.686 -0.694 H5 5ZN 30 5ZN H6 H6 H 0 1 N N N 102.589 -0.193 112.343 5.563 2.014 -0.187 H6 5ZN 31 5ZN H7 H7 H 0 1 N N N 104.131 -3.296 108.825 1.934 -1.340 -0.104 H7 5ZN 32 5ZN H8 H8 H 0 1 N N N 110.646 -3.073 106.451 -4.685 0.487 2.022 H8 5ZN 33 5ZN H9 H9 H 0 1 N N N 109.105 -3.895 106.872 -5.563 1.297 0.727 H9 5ZN 34 5ZN H10 H10 H 0 1 N N N 99.827 -1.658 110.295 6.652 -1.488 0.691 H10 5ZN 35 5ZN H11 H11 H 0 1 N N N 107.922 -4.153 110.914 -1.100 0.640 -2.191 H11 5ZN 36 5ZN H12 H12 H 0 1 N N N 108.338 -4.560 109.214 -1.862 -0.410 -0.971 H12 5ZN 37 5ZN H13 H13 H 0 1 N N N 106.629 -3.019 108.384 0.165 -0.374 0.396 H13 5ZN 38 5ZN H14 H14 H 0 1 N N N 105.890 -4.168 109.551 0.609 -0.845 -1.262 H14 5ZN 39 5ZN H15 H15 H 0 1 N N N 111.691 -6.859 106.719 -5.915 -2.549 -0.228 H15 5ZN 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ZN O20 C19 DOUB N N 1 5ZN C19 C21 SING N N 2 5ZN C19 N18 SING N N 3 5ZN C21 C1 SING N N 4 5ZN N18 C16 SING N N 5 5ZN C1 N15 DOUB N N 6 5ZN C1 C2 SING N N 7 5ZN C16 N15 SING N N 8 5ZN C16 O17 DOUB N N 9 5ZN CL25 C13 SING N N 10 5ZN O3 C2 DOUB N N 11 5ZN C2 N4 SING N N 12 5ZN C6 C5 SING N N 13 5ZN C6 N7 SING N N 14 5ZN C14 C13 DOUB Y N 15 5ZN C14 C10 SING Y N 16 5ZN C13 C22 SING Y N 17 5ZN N4 C5 SING N N 18 5ZN N4 C9 SING N N 19 5ZN N7 C8 SING N N 20 5ZN N7 C10 SING N N 21 5ZN C8 C9 SING N N 22 5ZN C10 C11 DOUB Y N 23 5ZN C22 C23 SING N N 24 5ZN C22 C12 DOUB Y N 25 5ZN C23 O24 DOUB N N 26 5ZN C11 C12 SING Y N 27 5ZN C8 H1 SING N N 28 5ZN C8 H2 SING N N 29 5ZN C9 H3 SING N N 30 5ZN C9 H4 SING N N 31 5ZN C11 H5 SING N N 32 5ZN C12 H6 SING N N 33 5ZN C14 H7 SING N N 34 5ZN C21 H8 SING N N 35 5ZN C21 H9 SING N N 36 5ZN C23 H10 SING N N 37 5ZN C5 H11 SING N N 38 5ZN C5 H12 SING N N 39 5ZN C6 H13 SING N N 40 5ZN C6 H14 SING N N 41 5ZN N18 H15 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5ZN SMILES ACDLabs 12.01 "O=C(C=1CC(=O)NC(=O)N=1)N1CCN(CC1)c1ccc(C=O)c(Cl)c1" 5ZN InChI InChI 1.03 "InChI=1S/C16H15ClN4O4/c17-12-7-11(2-1-10(12)9-22)20-3-5-21(6-4-20)15(24)13-8-14(23)19-16(25)18-13/h1-2,7,9H,3-6,8H2,(H,19,23,25)" 5ZN InChIKey InChI 1.03 KUILKXDVCXJXPR-UHFFFAOYSA-N 5ZN SMILES_CANONICAL CACTVS 3.385 "Clc1cc(ccc1C=O)N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3" 5ZN SMILES CACTVS 3.385 "Clc1cc(ccc1C=O)N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3" 5ZN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3)Cl)C=O" 5ZN SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3)Cl)C=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5ZN "SYSTEMATIC NAME" ACDLabs 12.01 "2-chloro-4-[4-(2,6-dioxo-1,2,5,6-tetrahydropyrimidine-4-carbonyl)piperazin-1-yl]benzaldehyde" 5ZN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[4-[[2,6-bis(oxidanylidene)-5~{H}-pyrimidin-4-yl]carbonyl]piperazin-1-yl]-2-chloranyl-benzaldehyde" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5ZN "Create component" 2021-07-29 RCSB 5ZN "Initial release" 2021-11-10 RCSB ##