data_607 # _chem_comp.id 607 _chem_comp.name "2-(2'-AMINO-5-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-6-OXIDO-1,1'-BIPHENYL-3-YL)SUCCINATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H19 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CRA_18607 _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2003-03-14 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.438 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 607 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O36 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 607 C1 C1 C 0 1 Y N N 44.304 -3.064 26.271 5.884 0.106 0.018 C1 607 1 607 C2 C2 C 0 1 Y N N 44.684 -1.696 26.261 5.770 1.215 -0.828 C2 607 2 607 C3 C3 C 0 1 Y N N 44.652 -0.896 27.416 4.541 1.702 -1.171 C3 607 3 607 C4 C4 C 0 1 Y N N 44.235 -1.502 28.566 3.389 1.097 -0.681 C4 607 4 607 C5 C5 C 0 1 Y N N 43.874 -2.776 28.626 3.485 -0.020 0.171 C5 607 5 607 C6 C6 C 0 1 Y N N 43.885 -3.605 27.514 4.742 -0.516 0.514 C6 607 6 607 C7 C7 C 0 1 N N N 44.350 -3.836 25.079 7.220 -0.410 0.381 C7 607 7 607 N1 N1 N 0 1 N N N 44.178 -5.140 25.096 7.331 -1.466 1.186 N1 607 8 607 N2 N2 N 1 1 N N N 44.568 -3.223 23.940 8.315 0.180 -0.097 N2 607 9 607 N3 N3 N 0 1 Y N N 44.109 -1.035 29.759 2.042 1.346 -0.840 N3 607 10 607 N4 N4 N 0 1 Y N N 43.512 -3.148 29.846 2.219 -0.392 0.486 N4 607 11 607 C8 C8 C 0 1 Y N N 43.684 -2.019 30.488 1.366 0.407 -0.106 C8 607 12 607 "C1'" "C1'" C 0 1 Y N N 43.422 -1.902 31.869 -0.104 0.312 0.003 "C1'" 607 13 607 "C2'" "C2'" C 0 1 Y N N 43.104 -3.006 32.671 -0.727 -0.938 0.002 "C2'" 607 14 607 "C3'" "C3'" C 0 1 Y N N 42.843 -2.880 34.028 -2.100 -1.029 0.103 "C3'" 607 15 607 CVX "C31'" C 0 1 N N R 42.467 -4.125 34.870 -2.763 -2.382 0.101 CVX 607 16 607 CWX "C32'" C 0 1 N N N 40.958 -4.298 34.642 -2.255 -3.193 1.266 CWX 607 17 607 OXX "O33'" O 0 1 N N N 40.599 -5.104 33.806 -1.430 -2.715 2.027 OXX 607 18 607 OYX "O34'" O -1 1 N N N 40.203 -3.612 35.300 -2.668 -4.326 1.447 OYX 607 19 607 C6X "C42'" C 0 1 N N N 42.783 -3.981 36.433 -2.438 -3.108 -1.206 C6X 607 20 607 C7X "C43'" C 0 1 N N N 43.421 -5.251 37.109 -3.199 -4.407 -1.262 C7X 607 21 607 O8X "O44'" O 0 1 N N N 43.200 -6.353 36.628 -3.967 -4.738 -0.300 O8X 607 22 607 O9X "O45'" O -1 1 N N N 44.120 -5.080 38.109 -3.075 -5.176 -2.272 O9X 607 23 607 "C4'" "C4'" C 0 1 Y N N 42.911 -1.636 34.589 -2.871 0.114 0.207 "C4'" 607 24 607 "C5'" "C5'" C 0 1 Y N N 43.222 -0.496 33.867 -2.267 1.369 0.210 "C5'" 607 25 607 "C6'" "C6'" C 0 1 Y N N 43.475 -0.655 32.508 -0.877 1.472 0.113 "C6'" 607 26 607 "O6'" "O6'" O -1 1 N N N 43.780 0.447 31.746 -0.281 2.691 0.116 "O6'" 607 27 607 C1B "C1''" C 0 1 Y N N 43.279 0.733 34.544 -3.098 2.593 0.320 C1B 607 28 607 C2B "C2''" C 0 1 Y N N 44.474 1.440 34.703 -3.148 3.507 -0.739 C2B 607 29 607 C3B "C3''" C 0 1 Y N N 44.557 2.635 35.404 -3.933 4.646 -0.627 C3B 607 30 607 C4B "C4''" C 0 1 Y N N 43.429 3.178 35.974 -4.651 4.881 0.529 C4B 607 31 607 C5B "C5''" C 0 1 Y N N 42.216 2.523 35.841 -4.598 3.981 1.580 C5B 607 32 607 C6B "C6''" C 0 1 Y N N 42.143 1.317 35.135 -3.826 2.841 1.481 C6B 607 33 607 N2B "N2''" N 0 1 N N N 45.628 1.083 34.203 -2.422 3.267 -1.906 N2B 607 34 607 HC2 HC2 H 0 1 N N N 45.008 -1.237 25.341 6.660 1.690 -1.213 HC2 607 35 607 HC3 HC3 H 0 1 N N N 44.939 0.142 27.403 4.464 2.558 -1.824 HC3 607 36 607 HC6 HC6 H 0 1 N N N 43.580 -4.638 27.600 4.829 -1.375 1.163 HC6 607 37 607 HH11 HH11 H 0 0 N N N 44.011 -5.584 25.991 8.208 -1.804 1.425 HH11 607 38 607 HH12 HH12 H 0 0 N N N 44.162 -5.764 24.319 6.534 -1.896 1.535 HH12 607 39 607 HH21 HH21 H 0 0 N N N 44.691 -2.229 23.923 8.234 0.949 -0.683 HH21 607 40 607 HH22 HH22 H 0 0 N N N 44.663 -3.725 23.082 9.192 -0.156 0.144 HH22 607 41 607 HN3 HN3 H 0 1 N N N 44.276 -0.118 30.071 1.646 2.054 -1.372 HN3 607 42 607 "HC2'" "HC2'" H 0 0 N N N 43.052 -3.985 32.220 -0.132 -1.836 -0.079 "HC2'" 607 43 607 H31B H31B H 0 0 N N N 42.986 -4.981 34.466 -3.843 -2.258 0.189 H31B 607 44 607 H42A H42A H 0 0 N N N 43.451 -3.151 36.601 -2.725 -2.481 -2.050 H42A 607 45 607 H42B H42B H 0 0 N N N 41.879 -3.759 36.982 -1.368 -3.311 -1.252 H42B 607 46 607 "HC4'" "HC4'" H 0 0 N N N 42.707 -1.525 35.642 -3.945 0.033 0.285 "HC4'" 607 47 607 H3B "H3''" H 0 1 N N N 45.502 3.146 35.508 -3.978 5.351 -1.444 H3B 607 48 607 H4B "H4''" H 0 1 N N N 43.494 4.110 36.519 -5.256 5.771 0.614 H4B 607 49 607 H5B "H5''" H 0 1 N N N 41.321 2.967 36.253 -5.162 4.172 2.480 H5B 607 50 607 H6B "H6''" H 0 1 N N N 41.183 0.825 35.046 -3.788 2.142 2.303 H6B 607 51 607 HN2A HN2A H 0 0 N N N 46.325 1.783 34.215 -2.465 3.898 -2.642 HN2A 607 52 607 HN2B HN2B H 0 0 N N N 45.562 0.561 33.377 -1.874 2.470 -1.981 HN2B 607 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 607 C1 C2 DOUB Y N 1 607 C1 C6 SING Y N 2 607 C1 C7 SING N N 3 607 C2 C3 SING Y N 4 607 C2 HC2 SING N N 5 607 C3 C4 DOUB Y N 6 607 C3 HC3 SING N N 7 607 C4 C5 SING Y N 8 607 C4 N3 SING Y N 9 607 C5 C6 DOUB Y N 10 607 C5 N4 SING Y N 11 607 C6 HC6 SING N N 12 607 C7 N1 SING N N 13 607 C7 N2 DOUB N N 14 607 N1 HH11 SING N N 15 607 N1 HH12 SING N N 16 607 N2 HH21 SING N N 17 607 N2 HH22 SING N N 18 607 N3 C8 SING Y N 19 607 N3 HN3 SING N N 20 607 N4 C8 DOUB Y N 21 607 C8 "C1'" SING Y N 22 607 "C1'" "C2'" DOUB Y N 23 607 "C1'" "C6'" SING Y N 24 607 "C2'" "C3'" SING Y N 25 607 "C2'" "HC2'" SING N N 26 607 "C3'" CVX SING N N 27 607 "C3'" "C4'" DOUB Y N 28 607 CVX CWX SING N N 29 607 CVX C6X SING N N 30 607 CVX H31B SING N N 31 607 CWX OXX DOUB N N 32 607 CWX OYX SING N N 33 607 C6X C7X SING N N 34 607 C6X H42A SING N N 35 607 C6X H42B SING N N 36 607 C7X O8X DOUB N N 37 607 C7X O9X SING N N 38 607 "C4'" "C5'" SING Y N 39 607 "C4'" "HC4'" SING N N 40 607 "C5'" "C6'" DOUB Y N 41 607 "C5'" C1B SING Y N 42 607 "C6'" "O6'" SING N N 43 607 C1B C2B DOUB Y N 44 607 C1B C6B SING Y N 45 607 C2B C3B SING Y N 46 607 C2B N2B SING N N 47 607 C3B C4B DOUB Y N 48 607 C3B H3B SING N N 49 607 C4B C5B SING Y N 50 607 C4B H4B SING N N 51 607 C5B C6B DOUB Y N 52 607 C5B H5B SING N N 53 607 C6B H6B SING N N 54 607 N2B HN2A SING N N 55 607 N2B HN2B SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 607 SMILES ACDLabs 10.04 "[O-]C(=O)CC(C([O-])=O)c4cc(c2nc1cc(ccc1n2)\C(=[NH2+])N)c([O-])c(c3ccccc3N)c4" 607 SMILES_CANONICAL CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(cc(c3[O-])c4ccccc4N)[C@@H](CC([O-])=O)C([O-])=O" 607 SMILES CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(cc(c3[O-])c4ccccc4N)[CH](CC([O-])=O)C([O-])=O" 607 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(c(c1)c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)[C@@H](CC(=O)[O-])C(=O)[O-])N" 607 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(c(c1)c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)C(CC(=O)[O-])C(=O)[O-])N" 607 InChI InChI 1.03 "InChI=1S/C24H21N5O5/c25-17-4-2-1-3-13(17)15-7-12(14(24(33)34)10-20(30)31)8-16(21(15)32)23-28-18-6-5-11(22(26)27)9-19(18)29-23/h1-9,14,32H,10,25H2,(H3,26,27)(H,28,29)(H,30,31)(H,33,34)/p-2/t14-/m1/s1" 607 InChIKey InChI 1.03 KLIWSPNZLMZLEF-CQSZACIVSA-L # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 607 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R)-2-(2'-amino-5-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-6-oxidobiphenyl-3-yl)butanedioate" 607 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[3-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-5-(2-aminophenyl)-4-oxido-phenyl]butanedioate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 607 "Create component" 2003-03-14 RCSB 607 "Modify aromatic_flag" 2011-06-04 RCSB 607 "Modify descriptor" 2011-06-04 RCSB 607 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 607 _pdbx_chem_comp_synonyms.name CRA_18607 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##