data_611 # _chem_comp.id 611 _chem_comp.name "N-[(E)-3-[(2R,3S,4R,5S)-3,4-dihydroxy-5-pyridin-4-ylsulfanyl-oxolan-2-yl]prop-2-enyl]-2,3-dihydroxy-5-nitro-benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-08-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.434 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 611 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3OE5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 611 C1 C1 C 0 1 N N S 20.464 -30.329 13.322 -2.953 2.700 1.389 C1 611 1 611 C2 C2 C 0 1 N N R 19.387 -31.433 13.330 -3.842 1.552 1.917 C2 611 2 611 C3 C3 C 0 1 N N S 18.068 -30.667 13.201 -4.069 0.655 0.680 C3 611 3 611 O4 O4 O 0 1 N N N 18.423 -29.406 12.616 -2.950 0.933 -0.189 O4 611 4 611 C5 C5 C 0 1 N N R 19.784 -29.416 12.256 -2.748 2.361 -0.104 C5 611 5 611 C6 C6 C 0 1 N N N 19.918 -30.003 10.916 -1.350 2.720 -0.536 C6 611 6 611 S7 S7 S 0 1 N N N 16.950 -31.614 12.158 -4.075 -1.094 1.161 S7 611 7 611 O8 O8 O 0 1 N N N 20.477 -29.620 14.559 -3.620 3.956 1.530 O8 611 8 611 O9 O9 O 0 1 N N N 19.380 -32.212 14.533 -5.086 2.063 2.400 O9 611 9 611 C10 C10 C 0 1 N N N 20.680 -29.442 10.019 -0.583 1.814 -1.093 C10 611 10 611 C11 C11 C 0 1 Y N N 15.409 -31.140 12.597 -4.491 -1.917 -0.341 C11 611 11 611 C12 C12 C 0 1 N N N 20.846 -29.974 8.634 0.815 2.174 -1.525 C12 611 12 611 N13 N13 N 0 1 N N N 21.798 -29.219 7.860 1.770 1.253 -0.903 N13 611 13 611 C14 C14 C 0 1 N N N 22.614 -29.700 6.904 3.089 1.385 -1.147 C14 611 14 611 C15 C15 C 0 1 Y N N 23.668 -28.849 6.296 4.051 0.458 -0.520 C15 611 15 611 C16 C16 C 0 1 Y N N 23.693 -27.440 6.500 5.422 0.591 -0.772 C16 611 16 611 C17 C17 C 0 1 Y N N 24.767 -26.726 5.902 6.320 -0.289 -0.175 C17 611 17 611 C18 C18 C 0 1 Y N N 25.743 -27.290 5.130 5.856 -1.289 0.663 C18 611 18 611 C19 C19 C 0 1 Y N N 25.693 -28.692 4.965 4.499 -1.420 0.911 C19 611 19 611 C20 C20 C 0 1 Y N N 24.662 -29.466 5.541 3.599 -0.554 0.332 C20 611 20 611 N21 N21 N 1 1 N N N 26.693 -29.360 4.162 4.015 -2.494 1.808 N21 611 21 611 O22 O22 O 0 1 N N N 22.782 -26.746 7.191 5.872 1.572 -1.594 O22 611 22 611 O23 O23 O 0 1 N N N 24.812 -25.357 6.088 7.653 -0.167 -0.414 O23 611 23 611 O24 O24 O 0 1 N N N 22.504 -30.901 6.519 3.486 2.266 -1.884 O24 611 24 611 O25 O25 O 0 1 N N N 27.496 -28.742 3.514 4.809 -3.259 2.326 O25 611 25 611 O26 O26 O -1 1 N N N 26.658 -30.582 4.153 2.823 -2.612 2.029 O26 611 26 611 C27 C27 C 0 1 Y N N 14.235 -31.884 12.159 -4.598 -3.308 -0.389 C27 611 27 611 C28 C28 C 0 1 Y N N 12.955 -31.486 12.564 -4.925 -3.913 -1.584 C28 611 28 611 N29 N29 N 0 1 Y N N 12.699 -30.395 13.361 -5.135 -3.194 -2.672 N29 611 29 611 C30 C30 C 0 1 Y N N 13.814 -29.677 13.773 -5.043 -1.877 -2.667 C30 611 30 611 C31 C31 C 0 1 Y N N 15.119 -30.017 13.429 -4.726 -1.195 -1.511 C31 611 31 611 H1 H1 H 0 1 N N N 21.497 -30.666 13.148 -1.997 2.714 1.912 H1 611 32 611 H2 H2 H 0 1 N N N 19.568 -32.157 12.522 -3.326 0.998 2.701 H2 611 33 611 H3 H3 H 0 1 N N N 17.551 -30.510 14.159 -5.006 0.917 0.188 H3 611 34 611 H5 H5 H 0 1 N N N 20.235 -28.413 12.228 -3.482 2.885 -0.716 H5 611 35 611 H6 H6 H 0 1 N N N 19.381 -30.907 10.672 -0.979 3.723 -0.388 H6 611 36 611 HO8 HO8 H 0 1 N N N 21.146 -28.946 14.531 -3.828 4.190 2.445 HO8 611 37 611 HO9 HO9 H 0 1 N N N 18.699 -32.872 14.479 -5.683 1.385 2.743 HO9 611 38 611 H10 H10 H 0 1 N N N 21.219 -28.547 10.292 -0.954 0.811 -1.241 H10 611 39 611 H12 H12 H 0 1 N N N 21.199 -31.014 8.701 0.891 2.097 -2.610 H12 611 40 611 H12A H12A H 0 0 N N N 19.872 -29.930 8.126 1.040 3.194 -1.217 H12A 611 41 611 HN13 HN13 H 0 0 N N N 21.859 -28.240 8.052 1.453 0.550 -0.315 HN13 611 42 611 H18 H18 H 0 1 N N N 26.515 -26.693 4.668 6.555 -1.971 1.124 H18 611 43 611 H20 H20 H 0 1 N N N 24.644 -30.536 5.396 2.543 -0.658 0.534 H20 611 44 611 HO22 HO22 H 0 0 N N N 23.014 -25.825 7.186 6.077 2.402 -1.140 HO22 611 45 611 HO23 HO23 H 0 0 N N N 25.571 -25.001 5.642 8.113 0.413 0.208 HO23 611 46 611 H27 H27 H 0 1 N N N 14.353 -32.746 11.519 -4.428 -3.901 0.497 H27 611 47 611 H28 H28 H 0 1 N N N 12.114 -32.074 12.228 -5.011 -4.988 -1.631 H28 611 48 611 H30 H30 H 0 1 N N N 13.660 -28.807 14.394 -5.222 -1.327 -3.579 H30 611 49 611 H31 H31 H 0 1 N N N 15.934 -29.415 13.802 -4.657 -0.117 -1.513 H31 611 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 611 C1 C2 SING N N 1 611 C1 C5 SING N N 2 611 C1 O8 SING N N 3 611 C2 C3 SING N N 4 611 C2 O9 SING N N 5 611 C3 O4 SING N N 6 611 C3 S7 SING N N 7 611 O4 C5 SING N N 8 611 C5 C6 SING N N 9 611 C6 C10 DOUB N N 10 611 S7 C11 SING N N 11 611 C10 C12 SING N N 12 611 C11 C27 DOUB Y N 13 611 C11 C31 SING Y E 14 611 C12 N13 SING N N 15 611 N13 C14 SING N N 16 611 C14 C15 SING N N 17 611 C14 O24 DOUB N N 18 611 C15 C16 DOUB Y N 19 611 C15 C20 SING Y N 20 611 C16 C17 SING Y N 21 611 C16 O22 SING N N 22 611 C17 C18 DOUB Y N 23 611 C17 O23 SING N N 24 611 C18 C19 SING Y N 25 611 C19 C20 DOUB Y N 26 611 C19 N21 SING N N 27 611 N21 O25 DOUB N N 28 611 N21 O26 SING N N 29 611 C27 C28 SING Y N 30 611 C28 N29 DOUB Y N 31 611 N29 C30 SING Y N 32 611 C30 C31 DOUB Y N 33 611 C1 H1 SING N N 34 611 C2 H2 SING N N 35 611 C3 H3 SING N N 36 611 C5 H5 SING N N 37 611 C6 H6 SING N N 38 611 O8 HO8 SING N N 39 611 O9 HO9 SING N N 40 611 C10 H10 SING N N 41 611 C12 H12 SING N N 42 611 C12 H12A SING N N 43 611 N13 HN13 SING N N 44 611 C18 H18 SING N N 45 611 C20 H20 SING N N 46 611 O22 HO22 SING N N 47 611 O23 HO23 SING N N 48 611 C27 H27 SING N N 49 611 C28 H28 SING N N 50 611 C30 H30 SING N N 51 611 C31 H31 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 611 SMILES ACDLabs 12.01 "[O-][N+](=O)c1cc(c(O)c(O)c1)C(=O)NC/C=C/C3OC(Sc2ccncc2)C(O)C3O" 611 SMILES_CANONICAL CACTVS 3.370 "O[C@@H]1[C@H](O)[C@H](O[C@H]1Sc2ccncc2)\C=C\CNC(=O)c3cc(cc(O)c3O)[N+]([O-])=O" 611 SMILES CACTVS 3.370 "O[CH]1[CH](O)[CH](O[CH]1Sc2ccncc2)C=CCNC(=O)c3cc(cc(O)c3O)[N+]([O-])=O" 611 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cnccc1S[C@H]2[C@@H]([C@@H]([C@H](O2)/C=C/CNC(=O)c3cc(cc(c3O)O)[N+](=O)[O-])O)O" 611 SMILES "OpenEye OEToolkits" 1.7.0 "c1cnccc1SC2C(C(C(O2)C=CCNC(=O)c3cc(cc(c3O)O)[N+](=O)[O-])O)O" 611 InChI InChI 1.03 "InChI=1S/C19H19N3O8S/c23-13-9-10(22(28)29)8-12(15(13)24)18(27)21-5-1-2-14-16(25)17(26)19(30-14)31-11-3-6-20-7-4-11/h1-4,6-9,14,16-17,19,23-26H,5H2,(H,21,27)/b2-1+/t14-,16-,17-,19+/m1/s1" 611 InChIKey InChI 1.03 XRZIENNFYKGKSZ-GXSCOFJOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 611 "SYSTEMATIC NAME" ACDLabs 12.01 "pyridin-4-yl (5E)-5,6,7-trideoxy-7-[(2,3-dihydroxy-5-nitrobenzoyl)amino]-1-thio-beta-D-ribo-hept-5-enofuranoside" 611 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N-[(E)-3-[(2R,3S,4R,5S)-3,4-dihydroxy-5-pyridin-4-ylsulfanyl-oxolan-2-yl]prop-2-enyl]-2,3-dihydroxy-5-nitro-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 611 "Create component" 2010-08-24 PDBJ 611 "Modify aromatic_flag" 2011-06-04 RCSB 611 "Modify descriptor" 2011-06-04 RCSB #