data_648 # _chem_comp.id 648 _chem_comp.name "1-[3-(thiophen-3-yl)benzyl]piperidin-2-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H17 N O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-01-23 _chem_comp.pdbx_modified_date 2023-02-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 271.377 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 648 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5F6P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 648 C2 C1 C 0 1 N N N 17.815 -10.905 -0.279 -4.207 -1.265 1.554 C2 648 1 648 C7 C2 C 0 1 Y N N 17.493 -12.927 4.049 0.400 0.481 -0.673 C7 648 2 648 C6 C3 C 0 1 Y N N 17.828 -11.823 4.687 -0.743 1.248 -0.777 C6 648 3 648 C4 C4 C 0 1 N N N 19.250 -10.953 1.732 -3.839 0.765 0.163 C4 648 4 648 C10 C5 C 0 1 Y N N 17.482 -12.859 6.914 0.330 3.028 0.421 C10 648 5 648 C9 C6 C 0 1 Y N N 17.114 -14.128 6.190 1.479 2.270 0.530 C9 648 6 648 C15 C7 C 0 1 Y N N 17.396 -16.136 3.195 3.902 0.623 0.741 C15 648 7 648 C13 C8 C 0 1 Y N N 15.616 -16.210 4.791 2.849 -1.072 -0.411 C13 648 8 648 O O1 O 0 1 N N N 15.829 -10.243 2.614 -1.676 -1.829 -0.928 O 648 9 648 C C9 C 0 1 N N N 16.754 -10.489 1.911 -2.591 -1.304 -0.329 C 648 10 648 N N1 N 0 1 N N N 18.071 -10.660 2.523 -2.807 -0.002 -0.523 N 648 11 648 C3 C10 C 0 1 N N N 18.707 -11.783 0.581 -4.904 -0.167 0.742 C3 648 12 648 C1 C11 C 0 1 N N N 16.484 -10.589 0.399 -3.420 -2.155 0.589 C1 648 13 648 C5 C12 C 0 1 N N N 18.226 -10.537 3.959 -1.954 0.700 -1.485 C5 648 14 648 C11 C13 C 0 1 Y N N 17.811 -11.791 6.213 -0.778 2.519 -0.231 C11 648 15 648 C8 C14 C 0 1 Y N N 17.116 -14.155 4.880 1.520 0.989 -0.018 C8 648 16 648 C12 C15 C 0 1 Y N N 16.712 -15.478 4.279 2.751 0.170 0.097 C12 648 17 648 C14 C16 C 0 1 Y N N 16.790 -17.365 2.853 4.916 -0.238 0.747 C14 648 18 648 S S1 S 0 1 Y N N 15.418 -17.727 3.912 4.454 -1.715 -0.087 S 648 19 648 H3 H1 H 0 1 N N N 17.614 -11.426 -1.227 -3.526 -0.812 2.274 H3 648 20 648 H2 H2 H 0 1 N N N 18.340 -9.961 -0.484 -4.953 -1.862 2.079 H2 648 21 648 H10 H3 H 0 1 N N N 17.485 -12.964 2.970 0.425 -0.512 -1.096 H10 648 22 648 H7 H4 H 0 1 N N N 19.984 -11.526 2.318 -3.384 1.338 0.971 H7 648 23 648 H6 H5 H 0 1 N N N 19.716 -10.027 1.364 -4.308 1.450 -0.543 H6 648 24 648 H12 H6 H 0 1 N N N 17.477 -12.824 7.993 0.297 4.020 0.845 H12 648 25 648 H11 H7 H 0 1 N N N 16.849 -15.013 6.749 2.344 2.669 1.039 H11 648 26 648 H16 H8 H 0 1 N N N 18.270 -15.736 2.702 3.966 1.600 1.196 H16 648 27 648 H14 H9 H 0 1 N N N 14.987 -15.886 5.607 2.066 -1.592 -0.942 H14 648 28 648 H4 H10 H 0 1 N N N 18.123 -12.627 0.977 -5.474 -0.619 -0.070 H4 648 29 648 H5 H11 H 0 1 N N N 19.542 -12.167 -0.024 -5.573 0.400 1.390 H5 648 30 648 H1 H12 H 0 1 N N N 16.087 -9.634 0.023 -2.767 -2.816 1.158 H1 648 31 648 H H13 H 0 1 N N N 15.759 -11.392 0.198 -4.115 -2.753 0.000 H 648 32 648 H9 H14 H 0 1 N N N 19.279 -10.311 4.185 -2.514 1.520 -1.936 H9 648 33 648 H8 H15 H 0 1 N N N 17.589 -9.714 4.316 -1.637 0.005 -2.264 H8 648 34 648 H13 H16 H 0 1 N N N 18.073 -10.878 6.728 -1.674 3.115 -0.315 H13 648 35 648 H15 H17 H 0 1 N N N 17.122 -18.003 2.047 5.880 -0.057 1.198 H15 648 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 648 C2 C1 SING N N 1 648 C2 C3 SING N N 2 648 C1 C SING N N 3 648 C3 C4 SING N N 4 648 C4 N SING N N 5 648 C N SING N N 6 648 C O DOUB N N 7 648 N C5 SING N N 8 648 C14 C15 DOUB Y N 9 648 C14 S SING Y N 10 648 C15 C12 SING Y N 11 648 S C13 SING Y N 12 648 C5 C6 SING N N 13 648 C7 C6 DOUB Y N 14 648 C7 C8 SING Y N 15 648 C12 C13 DOUB Y N 16 648 C12 C8 SING N N 17 648 C6 C11 SING Y N 18 648 C8 C9 DOUB Y N 19 648 C9 C10 SING Y N 20 648 C11 C10 DOUB Y N 21 648 C2 H3 SING N N 22 648 C2 H2 SING N N 23 648 C7 H10 SING N N 24 648 C4 H7 SING N N 25 648 C4 H6 SING N N 26 648 C10 H12 SING N N 27 648 C9 H11 SING N N 28 648 C15 H16 SING N N 29 648 C13 H14 SING N N 30 648 C3 H4 SING N N 31 648 C3 H5 SING N N 32 648 C1 H1 SING N N 33 648 C1 H SING N N 34 648 C5 H9 SING N N 35 648 C5 H8 SING N N 36 648 C11 H13 SING N N 37 648 C14 H15 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 648 SMILES ACDLabs 12.01 "C1CC(=O)N(CC1)Cc2cc(ccc2)c3ccsc3" 648 InChI InChI 1.03 "InChI=1S/C16H17NOS/c18-16-6-1-2-8-17(16)11-13-4-3-5-14(10-13)15-7-9-19-12-15/h3-5,7,9-10,12H,1-2,6,8,11H2" 648 InChIKey InChI 1.03 UMRKGGGHCYSVML-UHFFFAOYSA-N 648 SMILES_CANONICAL CACTVS 3.385 "O=C1CCCCN1Cc2cccc(c2)c3cscc3" 648 SMILES CACTVS 3.385 "O=C1CCCCN1Cc2cccc(c2)c3cscc3" 648 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1cc(cc(c1)c2ccsc2)CN3CCCCC3=O" 648 SMILES "OpenEye OEToolkits" 2.0.4 "c1cc(cc(c1)c2ccsc2)CN3CCCCC3=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 648 "SYSTEMATIC NAME" ACDLabs 12.01 "1-[3-(thiophen-3-yl)benzyl]piperidin-2-one" 648 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "1-[(3-thiophen-3-ylphenyl)methyl]piperidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 648 "Create component" 2016-01-23 RCSB 648 "Initial release" 2023-02-08 RCSB #