data_64T # _chem_comp.id 64T _chem_comp.name "5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H17 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-11-27 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.224 _chem_comp.one_letter_code T _chem_comp.three_letter_code 64T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KEG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 64T P P P 0 1 N N N 7.827 28.456 65.494 -3.968 -1.665 3.118 P 64T 1 64T OP1 O1P O 0 1 N N N 6.708 29.337 65.906 -4.406 -2.599 4.208 OP1 64T 2 64T OP2 O2P O 0 1 N N N 7.608 27.443 64.432 -3.912 -2.311 1.636 OP2 64T 3 64T "O5'" O5* O 0 1 N N N 9.045 29.388 65.075 -2.493 -1.028 3.315 "O5'" 64T 4 64T "C5'" C5* C 0 1 N N N 9.723 30.160 66.061 -2.005 -0.136 2.327 "C5'" 64T 5 64T "C4'" C4* C 0 1 N N R 10.625 31.175 65.404 -0.611 0.328 2.728 "C4'" 64T 6 64T "O4'" O4* O 0 1 N N N 11.790 30.447 64.940 0.247 -0.829 2.764 "O4'" 64T 7 64T "C3'" C3* C 0 1 N N S 9.997 31.815 64.168 0.008 1.286 1.720 "C3'" 64T 8 64T "O3'" O3* O 0 1 N N N 9.612 33.179 64.274 0.965 2.121 2.368 "O3'" 64T 9 64T "C2'" C2* C 0 1 N N N 11.048 31.700 63.087 0.710 0.360 0.754 "C2'" 64T 10 64T "C1'" C1* C 0 1 N N R 12.189 30.885 63.657 1.157 -0.778 1.657 "C1'" 64T 11 64T N1 N1 N 0 1 N N N 12.487 29.702 62.749 1.164 -2.047 0.989 N1 64T 12 64T C2 C2 C 0 1 N N N 13.700 29.421 62.401 2.328 -2.529 0.385 C2 64T 13 64T O2 O2 O 0 1 N N N 14.688 30.075 62.776 3.395 -1.914 0.342 O2 64T 14 64T N3 N3 N 0 1 N N N 13.912 28.342 61.552 2.205 -3.796 -0.198 N3 64T 15 64T C4 C4 C 0 1 N N N 12.893 27.529 61.033 1.046 -4.538 -0.405 C4 64T 16 64T O4 O4 O 0 1 N N N 13.129 26.785 60.124 1.058 -5.660 -0.909 O4 64T 17 64T C5 C5 C 0 1 N N R 11.531 27.642 61.660 -0.235 -3.816 -0.023 C5 64T 18 64T C5M C5M C 0 1 N N N 11.444 26.653 62.819 -1.372 -4.797 0.256 C5M 64T 19 64T O5 O5 O 0 1 N N N 10.537 27.338 60.685 -0.594 -3.011 -1.143 O5 64T 20 64T C6 C6 C 0 1 N N N 11.256 29.081 62.185 -0.001 -2.908 1.177 C6 64T 21 64T OP3 O3P O 0 1 N Y N ? ? ? -4.901 -0.360 2.920 OP3 64T 22 64T HOP2 2HOP H 0 0 N N N 8.325 26.878 64.168 -4.684 -2.823 1.313 HOP2 64T 23 64T "H5'" 1H5* H 0 1 N N N 9.012 30.636 66.776 -1.971 -0.654 1.366 "H5'" 64T 24 64T "H5''" 2H5* H 0 0 N N N 10.278 29.516 66.783 -2.683 0.718 2.254 "H5''" 64T 25 64T "H4'" H4* H 0 1 N N N 10.844 31.980 66.143 -0.644 0.753 3.736 "H4'" 64T 26 64T "H3'" H3* H 0 1 N N N 9.037 31.281 63.973 -0.722 1.941 1.236 "H3'" 64T 27 64T "HO3'" H3T H 0 0 N Y N 9.221 33.577 63.505 1.142 2.873 1.775 "HO3'" 64T 28 64T "H2'" 1H2* H 0 1 N N N 10.648 31.284 62.132 -0.003 -0.001 0.003 "H2'" 64T 29 64T "H2''" 2H2* H 0 0 N N N 11.374 32.688 62.688 1.556 0.818 0.232 "H2''" 64T 30 64T "H1'" H1* H 0 1 N N N 13.120 31.493 63.729 2.163 -0.604 2.054 "H1'" 64T 31 64T H3 H3 H 0 1 N N N 14.876 28.133 61.293 3.067 -4.212 -0.541 H3 64T 32 64T H71 1H5M H 0 1 N N N 10.434 26.736 63.283 -2.339 -4.287 0.212 H71 64T 33 64T H72 2H5M H 0 1 N N N 11.686 25.609 62.509 -1.375 -5.604 -0.483 H72 64T 34 64T H73 3H5M H 0 1 N N N 12.267 26.788 63.558 -1.262 -5.240 1.250 H73 64T 35 64T HO5 HO5 H 0 1 N N N 9.676 27.409 61.081 -0.192 -2.139 -1.000 HO5 64T 36 64T H61 1H6 H 0 1 N N N 10.419 29.093 62.921 -0.872 -2.260 1.335 H61 64T 37 64T H62 2H6 H 0 1 N N N 10.800 29.723 61.395 0.177 -3.491 2.088 H62 64T 38 64T HOP3 3HOP H 0 0 N N N 0.717 -0.564 -0.264 -5.874 -0.475 2.871 HOP3 64T 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 64T P OP1 DOUB N N 1 64T P OP2 SING N N 2 64T P "O5'" SING N N 3 64T P OP3 SING N N 4 64T OP2 HOP2 SING N N 5 64T "O5'" "C5'" SING N N 6 64T "C5'" "C4'" SING N N 7 64T "C5'" "H5'" SING N N 8 64T "C5'" "H5''" SING N N 9 64T "C4'" "O4'" SING N N 10 64T "C4'" "C3'" SING N N 11 64T "C4'" "H4'" SING N N 12 64T "O4'" "C1'" SING N N 13 64T "C3'" "O3'" SING N N 14 64T "C3'" "C2'" SING N N 15 64T "C3'" "H3'" SING N N 16 64T "O3'" "HO3'" SING N N 17 64T "C2'" "C1'" SING N N 18 64T "C2'" "H2'" SING N N 19 64T "C2'" "H2''" SING N N 20 64T "C1'" N1 SING N N 21 64T "C1'" "H1'" SING N N 22 64T N1 C2 SING N N 23 64T N1 C6 SING N N 24 64T C2 O2 DOUB N N 25 64T C2 N3 SING N N 26 64T N3 C4 SING N N 27 64T N3 H3 SING N N 28 64T C4 O4 DOUB N N 29 64T C4 C5 SING N N 30 64T C5 C5M SING N N 31 64T C5 O5 SING N N 32 64T C5 C6 SING N N 33 64T C5M H71 SING N N 34 64T C5M H72 SING N N 35 64T C5M H73 SING N N 36 64T O5 HO5 SING N N 37 64T C6 H61 SING N N 38 64T C6 H62 SING N N 39 64T OP3 HOP3 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 64T SMILES ACDLabs 10.04 "O=C1N(CC(O)(C(=O)N1)C)C2OC(C(O)C2)COP(=O)(O)O" 64T SMILES_CANONICAL CACTVS 3.341 "C[C@@]1(O)CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O" 64T SMILES CACTVS 3.341 "C[C]1(O)CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O" 64T SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@]1(CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)O" 64T SMILES "OpenEye OEToolkits" 1.5.0 "CC1(CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)O)O" 64T InChI InChI 1.03 "InChI=1S/C10H17N2O9P/c1-10(16)4-12(9(15)11-8(10)14)7-2-5(13)6(21-7)3-20-22(17,18)19/h5-7,13,16H,2-4H2,1H3,(H,11,14,15)(H2,17,18,19)/t5-,6+,7+,10+/m0/s1" 64T InChIKey InChI 1.03 KFLPOBSZNOOWQL-MPXCPUAZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 64T "SYSTEMATIC NAME" ACDLabs 10.04 ;5-hydroxythymidine 5'-(dihydrogen phosphate) ; 64T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-[(5R)-5-hydroxy-5-methyl-2,4-dioxo-1,3-diazinan-1-yl]oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 64T "Create component" 2001-11-27 RCSB 64T "Modify descriptor" 2011-06-04 RCSB #