data_66P # _chem_comp.id 66P _chem_comp.name "4-[(4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)-1H-pyridin-2-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H21 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-[(cis-4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)pyridin-2(1H)-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-02-04 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.392 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 66P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5HX8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 66P C2 C1 C 0 1 N N N 5.871 57.839 0.587 -1.042 -1.545 -0.236 C2 66P 1 66P C3 C2 C 0 1 N N N 4.634 58.002 1.259 -1.961 -2.611 -0.212 C3 66P 2 66P N4 N1 N 0 1 Y N N 8.497 57.773 -0.965 1.032 0.547 -0.132 N4 66P 3 66P C5 C3 C 0 1 N N N 5.962 55.352 1.110 -2.864 -0.005 -0.851 C5 66P 4 66P C7 C4 C 0 1 N N N 7.973 55.064 2.615 -2.429 2.455 -0.815 C7 66P 5 66P C9 C5 C 0 1 N N N 7.935 53.957 0.333 -3.177 1.288 1.264 C9 66P 6 66P C10 C6 C 0 1 N N N 6.410 54.152 0.285 -3.704 0.125 0.421 C10 66P 7 66P C11 C7 C 0 1 Y N N 7.826 58.897 -0.775 1.309 -0.732 -0.019 C11 66P 8 66P C12 C8 C 0 1 Y N N 9.544 59.510 -2.012 3.242 0.352 0.027 C12 66P 9 66P C13 C9 C 0 1 Y N N 9.590 58.142 -1.754 2.182 1.266 -0.110 C13 66P 10 66P C15 C10 C 0 1 Y N N 11.640 58.012 -2.993 3.764 3.071 -0.142 C15 66P 11 66P O O1 O 0 1 N N N 6.358 61.343 -0.311 1.880 -3.413 0.453 O 66P 12 66P C C11 C 0 1 N N N 5.892 60.291 0.116 0.706 -3.150 0.247 C 66P 13 66P C1 C12 C 0 1 N N N 6.518 58.988 0.001 0.314 -1.816 -0.003 C1 66P 14 66P N1 N2 N 0 1 N N N 6.450 56.594 0.511 -1.467 -0.258 -0.490 N1 66P 15 66P C8 C13 C 0 1 N N N 8.417 53.861 1.780 -3.269 2.585 0.457 C8 66P 16 66P N2 N3 N 0 1 N N N 9.906 53.738 1.812 -2.763 3.702 1.266 N2 66P 17 66P C6 C14 C 0 1 N N N 6.454 55.231 2.548 -2.956 1.291 -1.658 C6 66P 18 66P C4 C15 C 0 1 N N N 4.070 59.224 1.338 -1.529 -3.868 0.032 C4 66P 19 66P N N4 N 0 1 N N N 4.670 60.315 0.796 -0.215 -4.131 0.259 N 66P 20 66P C14 C16 C 0 1 Y N N 10.641 57.373 -2.257 2.460 2.633 -0.195 C14 66P 21 66P C16 C17 C 0 1 Y N N 11.587 59.389 -3.235 4.806 2.165 -0.005 C16 66P 22 66P C17 C18 C 0 1 Y N N 10.529 60.156 -2.756 4.549 0.812 0.078 C17 66P 23 66P N3 N5 N 0 1 Y N N 8.410 59.970 -1.374 2.665 -0.904 0.083 N3 66P 24 66P H1 H1 H 0 1 N N N 4.144 57.150 1.707 -3.010 -2.425 -0.389 H1 66P 25 66P H3 H3 H 0 1 N N N 4.862 55.369 1.123 -3.240 -0.834 -1.451 H3 66P 26 66P H4 H4 H 0 1 N N N 8.274 54.909 3.662 -2.495 3.378 -1.390 H4 66P 27 66P H5 H5 H 0 1 N N N 8.455 55.973 2.225 -1.389 2.267 -0.547 H5 66P 28 66P H6 H6 H 0 1 N N N 8.198 53.031 -0.198 -3.775 1.381 2.170 H6 66P 29 66P H7 H7 H 0 1 N N N 8.425 54.812 -0.156 -2.137 1.100 1.532 H7 66P 30 66P H8 H8 H 0 1 N N N 6.104 54.306 -0.760 -4.744 0.313 0.153 H8 66P 31 66P H9 H9 H 0 1 N N N 5.924 53.248 0.680 -3.638 -0.799 0.996 H9 66P 32 66P H10 H10 H 0 1 N N N 12.466 57.435 -3.381 3.978 4.127 -0.207 H10 66P 33 66P H12 H12 H 0 1 N N N 6.512 56.399 -0.468 -0.841 0.480 -0.430 H12 66P 34 66P H13 H13 H 0 1 N N N 7.981 52.955 2.227 -4.308 2.773 0.188 H13 66P 35 66P H14 H14 H 0 1 N N N 10.215 53.676 2.761 -2.813 4.570 0.754 H14 66P 36 66P H15 H15 H 0 1 N N N 10.183 52.915 1.316 -3.259 3.768 2.141 H15 66P 37 66P H17 H17 H 0 1 N N N 6.171 56.140 3.099 -2.358 1.199 -2.564 H17 66P 38 66P H18 H18 H 0 1 N N N 5.978 54.356 3.015 -3.996 1.479 -1.926 H18 66P 39 66P H19 H19 H 0 1 N N N 3.122 59.338 1.843 -2.242 -4.678 0.049 H19 66P 40 66P H20 H20 H 0 1 N N N 10.680 56.308 -2.081 1.654 3.345 -0.301 H20 66P 41 66P H21 H21 H 0 1 N N N 12.376 59.862 -3.800 5.825 2.521 0.034 H21 66P 42 66P H22 H22 H 0 1 N N N 10.473 61.216 -2.954 5.365 0.112 0.185 H22 66P 43 66P H2 H2 H 0 1 N N N 4.206 61.196 0.889 0.064 -5.044 0.431 H2 66P 44 66P H11 H11 H 0 1 N N N 8.080 60.914 -1.355 3.133 -1.749 0.177 H11 66P 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 66P C16 C15 DOUB Y N 1 66P C16 C17 SING Y N 2 66P C15 C14 SING Y N 3 66P C17 C12 DOUB Y N 4 66P C14 C13 DOUB Y N 5 66P C12 C13 SING Y N 6 66P C12 N3 SING Y N 7 66P C13 N4 SING Y N 8 66P N3 C11 SING Y N 9 66P N4 C11 DOUB Y N 10 66P C11 C1 SING N N 11 66P O C DOUB N N 12 66P C1 C SING N N 13 66P C1 C2 DOUB N N 14 66P C N SING N N 15 66P C10 C9 SING N N 16 66P C10 C5 SING N N 17 66P C9 C8 SING N N 18 66P N1 C2 SING N N 19 66P N1 C5 SING N N 20 66P C2 C3 SING N N 21 66P N C4 SING N N 22 66P C5 C6 SING N N 23 66P C3 C4 DOUB N N 24 66P C8 N2 SING N N 25 66P C8 C7 SING N N 26 66P C6 C7 SING N N 27 66P C3 H1 SING N N 28 66P C5 H3 SING N N 29 66P C7 H4 SING N N 30 66P C7 H5 SING N N 31 66P C9 H6 SING N N 32 66P C9 H7 SING N N 33 66P C10 H8 SING N N 34 66P C10 H9 SING N N 35 66P C15 H10 SING N N 36 66P N1 H12 SING N N 37 66P C8 H13 SING N N 38 66P N2 H14 SING N N 39 66P N2 H15 SING N N 40 66P C6 H17 SING N N 41 66P C6 H18 SING N N 42 66P C4 H19 SING N N 43 66P C14 H20 SING N N 44 66P C16 H21 SING N N 45 66P C17 H22 SING N N 46 66P N H2 SING N N 47 66P N3 H11 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 66P SMILES ACDLabs 12.01 "C=1(C=CNC(=O)C=1c2nc3c(n2)cccc3)NC4CCC(CC4)N" 66P InChI InChI 1.03 "InChI=1S/C18H21N5O/c19-11-5-7-12(8-6-11)21-15-9-10-20-18(24)16(15)17-22-13-3-1-2-4-14(13)23-17/h1-4,9-12H,5-8,19H2,(H,22,23)(H2,20,21,24)/t11-,12+" 66P InChIKey InChI 1.03 JLWGOAGEDWMEBT-TXEJJXNPSA-N 66P SMILES_CANONICAL CACTVS 3.385 "N[C@H]1CC[C@H](CC1)NC2=C(C(=O)NC=C2)c3[nH]c4ccccc4n3" 66P SMILES CACTVS 3.385 "N[CH]1CC[CH](CC1)NC2=C(C(=O)NC=C2)c3[nH]c4ccccc4n3" 66P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1ccc2c(c1)[nH]c(n2)C3=C(C=CNC3=O)NC4CCC(CC4)N" 66P SMILES "OpenEye OEToolkits" 2.0.4 "c1ccc2c(c1)[nH]c(n2)C3=C(C=CNC3=O)NC4CCC(CC4)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 66P "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(cis-4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)pyridin-2(1H)-one" 66P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "4-[(4-azanylcyclohexyl)amino]-3-(1~{H}-benzimidazol-2-yl)-1~{H}-pyridin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 66P "Create component" 2016-02-04 RCSB 66P "Initial release" 2016-03-16 RCSB 66P "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 66P _pdbx_chem_comp_synonyms.name "4-[(cis-4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)pyridin-2(1H)-one" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##