data_6CL # _chem_comp.id 6CL _chem_comp.name 6-CARBOXYLYSINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H15 N2 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2005-08-08 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 191.205 _chem_comp.one_letter_code K _chem_comp.three_letter_code 6CL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6CL N N N 0 1 N N N Y Y N -13.059 149.803 6.051 1.180 -1.596 1.102 N 6CL 1 6CL CA CA C 0 1 N N S Y N N -13.191 151.256 6.006 0.051 -2.015 1.935 CA 6CL 2 6CL CB CB C 0 1 N N N N N N -11.810 151.888 5.850 0.251 -3.470 2.377 CB 6CL 3 6CL CG CG C 0 1 N N N N N N -11.666 153.220 6.564 0.321 -4.440 1.191 CG 6CL 4 6CL CD CD C 0 1 N N N N N N -11.028 154.269 5.667 0.546 -5.897 1.615 CD 6CL 5 6CL CE CE C 0 1 N N R N N N -11.884 155.524 5.582 0.546 -6.910 0.467 CE 6CL 6 6CL CZ CZ C 0 1 N N N N N N -11.129 156.658 4.918 1.669 -6.657 -0.517 CZ 6CL 7 6CL OH1 OH1 O 0 1 N N N N N N -9.910 156.782 5.160 1.510 -6.289 -1.674 OH1 6CL 8 6CL OH2 OH2 O 0 1 N N N N N N -11.755 157.423 4.156 2.894 -6.868 0.028 OH2 6CL 9 6CL NZ NZ N 1 1 N N N N N N -12.370 155.934 6.932 -0.759 -6.773 -0.254 NZ 6CL 10 6CL C C C 0 1 N N N Y N Y -14.081 151.689 4.843 0.001 -1.081 3.127 C 6CL 11 6CL O O O 0 1 N N N Y N Y -14.381 152.873 4.689 0.798 -0.185 3.368 O 6CL 12 6CL OXT OXT O 0 1 N Y N Y N Y ? ? ? -1.082 -1.349 3.900 OXT 6CL 13 6CL H2 HN2 H 0 1 N Y N Y Y N -13.501 149.454 6.877 1.009 -1.431 0.135 H2 6CL 14 6CL H H H 0 1 N N N Y Y N -12.090 149.556 6.061 2.097 -1.690 1.479 H 6CL 15 6CL HA HA H 0 1 N N N Y N N -13.656 151.592 6.945 -0.863 -1.908 1.341 HA 6CL 16 6CL HB2 HB1 H 0 1 N N N N N N -11.659 152.077 4.777 -0.584 -3.770 3.024 HB2 6CL 17 6CL HB3 HB2 H 0 1 N N N N N N -11.067 151.193 6.269 1.165 -3.551 2.977 HB3 6CL 18 6CL HG2 HG1 H 0 1 N N N N N N -11.017 153.074 7.440 -0.626 -4.391 0.639 HG2 6CL 19 6CL HG3 HG2 H 0 1 N N N N N N -12.664 153.571 6.864 1.104 -4.133 0.489 HG3 6CL 20 6CL HD2 HD1 H 0 1 N N N N N N -10.930 153.847 4.656 1.496 -5.956 2.162 HD2 6CL 21 6CL HD3 HD2 H 0 1 N N N N N N -10.044 154.538 6.080 -0.241 -6.162 2.333 HD3 6CL 22 6CL HE HE H 0 1 N N N N N N -12.760 155.288 4.960 0.562 -7.948 0.812 HE 6CL 23 6CL HH2 HH2 H 0 1 N N N N N N -11.163 158.082 3.812 3.654 -6.704 -0.570 HH2 6CL 24 6CL HZ1 HZ1 H 0 1 N N N N N N -12.998 155.240 7.285 -1.094 -7.689 -0.554 HZ1 6CL 25 6CL HZ2 HZ2 H 0 1 N N N N N N -12.846 156.811 6.863 -0.646 -6.180 -1.077 HZ2 6CL 26 6CL HZ3 HZ3 H 0 1 N N N N N N -11.592 156.026 7.553 -1.458 -6.353 0.359 HZ3 6CL 27 6CL HXT HXT H 0 1 N Y N Y N Y -0.554 0.269 -0.723 -1.143 -0.741 4.668 HXT 6CL 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6CL N CA SING N N 1 6CL N H2 SING N N 2 6CL N H SING N N 3 6CL CA CB SING N N 4 6CL CA C SING N N 5 6CL CA HA SING N N 6 6CL CB CG SING N N 7 6CL CB HB2 SING N N 8 6CL CB HB3 SING N N 9 6CL CG CD SING N N 10 6CL CG HG2 SING N N 11 6CL CG HG3 SING N N 12 6CL CD CE SING N N 13 6CL CD HD2 SING N N 14 6CL CD HD3 SING N N 15 6CL CE CZ SING N N 16 6CL CE NZ SING N N 17 6CL CE HE SING N N 18 6CL CZ OH1 DOUB N N 19 6CL CZ OH2 SING N N 20 6CL OH2 HH2 SING N N 21 6CL NZ HZ1 SING N N 22 6CL NZ HZ2 SING N N 23 6CL NZ HZ3 SING N N 24 6CL C O DOUB N N 25 6CL C OXT SING N N 26 6CL OXT HXT SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6CL SMILES ACDLabs 10.04 "O=C(O)C(CCCC(N)C(=O)O)[NH3+]" 6CL SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCC[C@@H]([NH3+])C(O)=O)C(O)=O" 6CL SMILES CACTVS 3.341 "N[CH](CCC[CH]([NH3+])C(O)=O)C(O)=O" 6CL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(C[C@H](C(=O)O)[NH3+])C[C@@H](C(=O)O)N" 6CL SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(C(=O)O)[NH3+])CC(C(=O)O)N" 6CL InChI InChI 1.03 "InChI=1S/C7H14N2O4/c8-4(6(10)11)2-1-3-5(9)7(12)13/h4-5H,1-3,8-9H2,(H,10,11)(H,12,13)/p+1/t4-,5+" 6CL InChIKey InChI 1.03 GMKMEZVLHJARHF-SYDPRGILSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6CL "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,5S)-5-amino-1,5-dicarboxypentan-1-aminium" 6CL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,6S)-6-amino-1,7-dihydroxy-1,7-dioxo-heptan-2-yl]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6CL "Create component" 2005-08-08 RCSB 6CL "Modify descriptor" 2011-06-04 RCSB 6CL "Modify backbone" 2023-11-03 PDBE #