data_6DB # _chem_comp.id 6DB _chem_comp.name octopine _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-03-17 _chem_comp.pdbx_modified_date 2016-11-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.264 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6DB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ITP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6DB O O1 O 0 1 N N N -14.089 80.644 -1.048 3.241 -1.625 1.568 O 6DB 1 6DB C C1 C 0 1 N N N -14.973 81.190 -0.357 3.434 -1.604 0.375 C 6DB 2 6DB CA C2 C 0 1 N N R -16.103 80.318 0.194 2.520 -0.810 -0.522 CA 6DB 3 6DB CB C3 C 0 1 N N N -17.300 80.403 -0.687 1.861 -1.747 -1.536 CB 6DB 4 6DB N N1 N 0 1 N N N -15.707 78.919 0.377 1.482 -0.159 0.289 N 6DB 5 6DB CAI C4 C 0 1 N N S -14.516 78.647 1.176 0.962 1.038 -0.385 CAI 6DB 6 6DB CAE C5 C 0 1 N N N -14.384 77.171 1.466 1.851 2.215 -0.076 CAE 6DB 7 6DB OAB O2 O 0 1 N N N -15.287 76.369 1.118 2.819 2.071 0.633 OAB 6DB 8 6DB OAF O3 O 0 1 N N N -13.367 76.753 2.087 1.568 3.423 -0.588 OAF 6DB 9 6DB CAK C6 C 0 1 N N N -14.444 79.384 2.535 -0.456 1.327 0.111 CAK 6DB 10 6DB CAL C7 C 0 1 N N N -15.565 79.000 3.485 -1.386 0.188 -0.312 CAL 6DB 11 6DB CAM C8 C 0 1 N N N -15.540 79.660 4.866 -2.805 0.477 0.184 CAM 6DB 12 6DB NAN N2 N 0 1 N N N -16.906 79.590 5.449 -3.695 -0.614 -0.221 NAN 6DB 13 6DB CAP C9 C 0 1 N N N -17.339 80.313 6.604 -5.028 -0.574 0.115 CAP 6DB 14 6DB NAO N3 N 0 1 N N N -18.574 80.192 7.029 -5.499 0.434 0.793 NAO 6DB 15 6DB NAQ N4 N 0 1 N N N -16.460 81.011 7.238 -5.863 -1.598 -0.266 NAQ 6DB 16 6DB OXT O4 O 0 1 N N N -14.924 82.421 -0.114 4.466 -2.283 -0.150 OXT 6DB 17 6DB H1 H1 H 0 1 N N N -16.380 80.725 1.177 3.097 -0.052 -1.050 H1 6DB 18 6DB H2 H2 H 0 1 N N N -18.103 79.772 -0.278 1.283 -2.506 -1.008 H2 6DB 19 6DB H3 H3 H 0 1 N N N -17.644 81.446 -0.738 1.199 -1.173 -2.185 H3 6DB 20 6DB H4 H4 H 0 1 N N N -17.038 80.054 -1.697 2.630 -2.231 -2.138 H4 6DB 21 6DB H5 H5 H 0 1 N N N -16.473 78.447 0.813 0.737 -0.803 0.508 H5 6DB 22 6DB H7 H7 H 0 1 N N N -13.634 78.952 0.594 0.943 0.870 -1.462 H7 6DB 23 6DB H8 H8 H 0 1 N N N -13.436 75.814 2.213 2.167 4.148 -0.362 H8 6DB 24 6DB H9 H9 H 0 1 N N N -13.483 79.143 3.013 -0.452 1.407 1.198 H9 6DB 25 6DB H10 H10 H 0 1 N N N -14.499 80.467 2.349 -0.809 2.263 -0.321 H10 6DB 26 6DB H11 H11 H 0 1 N N N -16.518 79.266 3.004 -1.391 0.108 -1.399 H11 6DB 27 6DB H12 H12 H 0 1 N N N -15.520 77.911 3.633 -1.034 -0.748 0.120 H12 6DB 28 6DB H13 H13 H 0 1 N N N -14.831 79.129 5.518 -2.800 0.557 1.271 H13 6DB 29 6DB H14 H14 H 0 1 N N N -15.232 80.711 4.769 -3.157 1.413 -0.248 H14 6DB 30 6DB H15 H15 H 0 1 N N N -17.571 78.993 5.000 -3.344 -1.364 -0.726 H15 6DB 31 6DB H16 H16 H 0 1 N N N -18.729 80.697 7.878 -6.439 0.462 1.030 H16 6DB 32 6DB H18 H18 H 0 1 N N N -16.711 81.482 8.083 -5.512 -2.348 -0.771 H18 6DB 33 6DB H19 H19 H 0 1 N N N -15.527 81.081 6.884 -6.803 -1.570 -0.029 H19 6DB 34 6DB H20 H20 H 0 1 N N N -14.154 82.795 -0.526 5.027 -2.774 0.466 H20 6DB 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6DB O C DOUB N N 1 6DB CB CA SING N N 2 6DB C OXT SING N N 3 6DB C CA SING N N 4 6DB CA N SING N N 5 6DB N CAI SING N N 6 6DB OAB CAE DOUB N N 7 6DB CAI CAE SING N N 8 6DB CAI CAK SING N N 9 6DB CAE OAF SING N N 10 6DB CAK CAL SING N N 11 6DB CAL CAM SING N N 12 6DB CAM NAN SING N N 13 6DB NAN CAP SING N N 14 6DB CAP NAO DOUB N N 15 6DB CAP NAQ SING N N 16 6DB CA H1 SING N N 17 6DB CB H2 SING N N 18 6DB CB H3 SING N N 19 6DB CB H4 SING N N 20 6DB N H5 SING N N 21 6DB CAI H7 SING N N 22 6DB OAF H8 SING N N 23 6DB CAK H9 SING N N 24 6DB CAK H10 SING N N 25 6DB CAL H11 SING N N 26 6DB CAL H12 SING N N 27 6DB CAM H13 SING N N 28 6DB CAM H14 SING N N 29 6DB NAN H15 SING N N 30 6DB NAO H16 SING N N 31 6DB NAQ H18 SING N N 32 6DB NAQ H19 SING N N 33 6DB OXT H20 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6DB SMILES ACDLabs 12.01 "O=C(O)C(NC(C(O)=O)CCCN\C(=N)N)C" 6DB InChI InChI 1.03 "InChI=1S/C9H18N4O4/c1-5(7(14)15)13-6(8(16)17)3-2-4-12-9(10)11/h5-6,13H,2-4H2,1H3,(H,14,15)(H,16,17)(H4,10,11,12)/t5-,6+/m1/s1" 6DB InChIKey InChI 1.03 IMXSCCDUAFEIOE-RITPCOANSA-N 6DB SMILES_CANONICAL CACTVS 3.385 "C[C@@H](N[C@@H](CCCNC(N)=N)C(O)=O)C(O)=O" 6DB SMILES CACTVS 3.385 "C[CH](N[CH](CCCNC(N)=N)C(O)=O)C(O)=O" 6DB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C(/N)\NCCC[C@@H](C(=O)O)N[C@H](C)C(=O)O" 6DB SMILES "OpenEye OEToolkits" 2.0.4 "CC(C(=O)O)NC(CCCNC(=N)N)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6DB "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[(1R)-1-carboxyethyl]-L-arginine" 6DB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-5-carbamimidamido-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6DB "Create component" 2016-03-17 EBI 6DB "Initial release" 2016-11-30 RCSB #