data_6II # _chem_comp.id 6II _chem_comp.name "beta-D-glucopyranosyl 1,3,4-trisphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H15 O15 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2R,3R,4R,5R,6S)-2-(hydroxymethyl)-5-oxidanyl-3,6-diphosphonooxy-oxan-4-yl] dihydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-12 _chem_comp.pdbx_modified_date 2024-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.096 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6II _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PPF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6II C2 C1 C 0 1 N N R N N N 9.784 29.802 85.481 -0.914 -0.996 -0.657 C2 6II 1 6II C3 C2 C 0 1 N N R N N N 11.176 29.677 86.070 0.426 -0.682 0.017 C3 6II 2 6II C4 C3 C 0 1 N N R N N N 11.809 28.366 85.654 0.742 0.805 -0.168 C4 6II 3 6II C5 C4 C 0 1 N N R N N N 11.825 28.263 84.140 -0.407 1.638 0.407 C5 6II 4 6II C6 C5 C 0 1 N N N N N N 12.387 26.951 83.636 -0.127 3.124 0.172 C6 6II 5 6II O01 O1 O 0 1 N N N N N N 8.688 29.634 83.365 -3.240 -0.341 -0.726 O01 6II 6 6II O04 O2 O 0 1 N N N N N N 9.278 29.379 80.944 -4.777 1.200 0.553 O04 6II 7 6II O03 O3 O 0 1 N N N N N N 6.866 29.688 81.598 -5.845 -0.401 -1.080 O03 6II 8 6II O02 O4 O 0 1 N N N N N N 8.518 31.584 81.897 -4.806 -1.244 1.184 O02 6II 9 6II P1 P1 P 0 1 N N N N N N 8.301 30.090 81.859 -4.669 -0.167 -0.005 P1 6II 10 6II O11 O5 O 0 1 N N N N N N 12.814 26.400 87.640 3.833 0.611 -1.247 O11 6II 11 6II O12 O6 O 0 1 N N N N N N 14.636 28.076 88.148 4.379 2.077 0.866 O12 6II 12 6II O08 O7 O 0 1 N N N N N N 11.122 29.732 87.507 1.458 -1.468 -0.582 O08 6II 13 6II P4 P2 P 0 1 N N N N N N 13.928 27.258 87.087 3.254 1.714 -0.227 P4 6II 14 6II O05 O8 O 0 1 N N N N N N 11.285 30.433 89.919 3.241 -1.732 1.331 O05 6II 15 6II O06 O9 O 0 1 N N N N N N 10.741 32.078 88.071 1.464 -3.482 0.939 O06 6II 16 6II O10 O10 O 0 1 N N N N N N 14.883 26.490 86.197 2.883 2.934 -0.978 O10 6II 17 6II O09 O11 O 0 1 N N N N N N 13.163 28.329 86.140 1.953 1.125 0.518 O09 6II 18 6II O07 O12 O 0 1 N N N N N N 13.074 31.138 88.280 3.318 -3.316 -0.766 O07 6II 19 6II P3 P3 P 0 1 N N N N N N 11.597 30.912 88.516 2.351 -2.521 0.246 P3 6II 20 6II C1 C6 C 0 1 N N S N N N 9.894 29.641 83.973 -1.999 -0.093 -0.063 C1 6II 21 6II O2 O13 O 0 1 N N N N N N 9.197 31.057 85.800 -1.254 -2.365 -0.428 O2 6II 22 6II O5 O14 O 0 1 N N N N N N 10.481 28.385 83.651 -1.628 1.275 -0.241 O5 6II 23 6II O6 O15 O 0 1 N N N N N N 12.635 26.986 82.231 -1.139 3.906 0.810 O6 6II 24 6II H1 H1 H 0 1 N N N N N N 9.161 28.986 85.876 -0.834 -0.814 -1.729 H1 6II 25 6II H2 H2 H 0 1 N N N N N N 11.795 30.503 85.690 0.362 -0.913 1.080 H2 6II 26 6II H3 H3 H 0 1 N N N N N N 11.227 27.530 86.071 0.855 1.024 -1.230 H3 6II 27 6II H4 H4 H 0 1 N N N N N N 12.439 29.084 83.741 -0.493 1.449 1.477 H4 6II 28 6II H5 H5 H 0 1 N N N N N N 11.666 26.149 83.850 0.847 3.381 0.589 H5 6II 29 6II H6 H6 H 0 1 N N N N N N 13.332 26.744 84.159 -0.130 3.330 -0.898 H6 6II 30 6II H7 H7 H 0 1 N N N N N N 6.838 29.051 80.894 -6.735 -0.312 -0.714 H7 6II 31 6II H8 H8 H 0 1 N N N N N N 9.243 31.814 81.328 -4.744 -2.164 0.890 H8 6II 32 6II H9 H9 H 0 1 N N N N N N 12.913 25.510 87.324 4.097 -0.217 -0.823 H9 6II 33 6II H10 H10 H 0 1 N N N N N N 15.575 27.959 88.064 5.193 2.438 0.487 H10 6II 34 6II H11 H11 H 0 1 N N N N N N 10.587 30.962 90.287 3.847 -1.084 0.947 H11 6II 35 6II H12 H12 H 0 1 N N N N N N 13.205 31.992 87.885 3.887 -3.969 -0.335 H12 6II 36 6II H13 H13 H 0 1 N N N N N N 10.523 30.455 83.583 -2.106 -0.305 1.001 H13 6II 37 6II H14 H14 H 0 1 N N N N N N 9.657 31.444 86.536 -2.093 -2.634 -0.828 H14 6II 38 6II H15 H15 H 0 1 N N N N N N 12.986 26.149 81.950 -1.025 4.860 0.702 H15 6II 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6II O04 P1 DOUB N N 1 6II O03 P1 SING N N 2 6II P1 O02 SING N N 3 6II P1 O01 SING N N 4 6II O6 C6 SING N N 5 6II O01 C1 SING N N 6 6II C6 C5 SING N N 7 6II O5 C1 SING N N 8 6II O5 C5 SING N N 9 6II C1 C2 SING N N 10 6II C5 C4 SING N N 11 6II C2 O2 SING N N 12 6II C2 C3 SING N N 13 6II C4 C3 SING N N 14 6II C4 O09 SING N N 15 6II C3 O08 SING N N 16 6II O09 P4 SING N N 17 6II O10 P4 DOUB N N 18 6II P4 O11 SING N N 19 6II P4 O12 SING N N 20 6II O08 P3 SING N N 21 6II O06 P3 DOUB N N 22 6II O07 P3 SING N N 23 6II P3 O05 SING N N 24 6II C2 H1 SING N N 25 6II C3 H2 SING N N 26 6II C4 H3 SING N N 27 6II C5 H4 SING N N 28 6II C6 H5 SING N N 29 6II C6 H6 SING N N 30 6II O03 H7 SING N N 31 6II O02 H8 SING N N 32 6II O11 H9 SING N N 33 6II O12 H10 SING N N 34 6II O05 H11 SING N N 35 6II O07 H12 SING N N 36 6II C1 H13 SING N N 37 6II O2 H14 SING N N 38 6II O6 H15 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6II InChI InChI 1.06 "InChI=1S/C6H15O15P3/c7-1-2-4(19-22(9,10)11)5(20-23(12,13)14)3(8)6(18-2)21-24(15,16)17/h2-8H,1H2,(H2,9,10,11)(H2,12,13,14)(H2,15,16,17)/t2-,3-,4-,5-,6+/m1/s1" 6II InChIKey InChI 1.06 IXJMLEYTDGNHLU-UKFBFLRUSA-N 6II SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O[P](O)(O)=O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O" 6II SMILES CACTVS 3.385 "OC[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O" 6II SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O" 6II SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id 6II _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-5-oxidanyl-3,6-diphosphonooxy-oxan-4-yl] dihydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6II _pdbx_chem_comp_synonyms.name "[(2R,3R,4R,5R,6S)-2-(hydroxymethyl)-5-oxidanyl-3,6-diphosphonooxy-oxan-4-yl] dihydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6II "Create component" 2023-07-12 PDBE 6II "Initial release" 2024-02-28 RCSB #