data_6NQ # _chem_comp.id 6NQ _chem_comp.name ;2'-Bromo-2'-deoxyadenosine 5'-[beta,gamma-imide]triphosphoric acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 Br N6 O11 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-11 _chem_comp.pdbx_modified_date 2017-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 569.093 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6NQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JVL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6NQ C4 C1 C 0 1 Y N N 62.200 12.853 -61.868 4.834 -1.491 0.315 C4 6NQ 1 6NQ C5 C2 C 0 1 Y N N 62.717 12.665 -60.602 4.997 -2.674 -0.424 C5 6NQ 2 6NQ C6 C3 C 0 1 Y N N 63.984 13.215 -60.339 6.189 -3.400 -0.260 C6 6NQ 3 6NQ C8 C4 C 0 1 Y N N 60.828 11.711 -60.629 3.056 -1.855 -0.936 C8 6NQ 4 6NQ N1 N1 N 0 1 Y N N 64.608 13.869 -61.345 7.103 -2.934 0.585 N1 6NQ 5 6NQ N3 N2 N 0 1 Y N N 62.790 13.472 -62.878 5.805 -1.103 1.137 N3 6NQ 6 6NQ PG P1 P 0 1 N N N 54.497 5.359 -60.792 -7.460 -1.218 0.954 PG 6NQ 7 6NQ O1G O1 O 0 1 N N N 55.396 5.181 -59.617 -7.912 -2.236 2.117 O1G 6NQ 8 6NQ O2G O2 O 0 1 N N N 53.363 4.335 -60.893 -7.913 -1.802 -0.477 O2G 6NQ 9 6NQ O3G O3 O 0 1 N N N 55.571 5.246 -61.855 -8.099 0.098 1.174 O3G 6NQ 10 6NQ PB P2 P 0 1 N N N 54.708 8.155 -61.686 -5.271 0.017 -0.221 PB 6NQ 11 6NQ O1B O4 O 0 1 N N N 54.311 9.512 -61.258 -5.947 1.461 0.009 O1B 6NQ 12 6NQ O2B O5 O 0 1 N N N 54.190 7.914 -63.087 -5.670 -0.509 -1.545 O2B 6NQ 13 6NQ N3B N3 N 0 1 N N N 53.911 6.976 -60.732 -5.786 -1.041 0.982 N3B 6NQ 14 6NQ PA P3 P 0 1 N N N 57.143 8.745 -60.834 -2.587 0.995 -1.011 PA 6NQ 15 6NQ O1A O6 O 0 1 N N N 56.219 9.053 -59.694 -2.380 0.297 -2.448 O1A 6NQ 16 6NQ O2A O7 O 0 1 N N N 58.454 8.123 -60.662 -3.071 2.380 -1.201 O2A 6NQ 17 6NQ O3A O8 O 0 1 N N N 56.320 7.967 -61.853 -3.669 0.160 -0.160 O3A 6NQ 18 6NQ "O5'" O9 O 0 1 N N N 57.618 10.153 -61.370 -1.185 1.020 -0.220 "O5'" 6NQ 19 6NQ "C5'" C5 C 0 1 N N N 56.824 10.957 -62.279 -0.053 1.770 -0.666 "C5'" 6NQ 20 6NQ "C4'" C6 C 0 1 N N R 57.800 11.596 -63.249 1.107 1.573 0.312 "C4'" 6NQ 21 6NQ "O4'" O10 O 0 1 N N N 58.779 12.347 -62.501 1.556 0.208 0.269 "O4'" 6NQ 22 6NQ "C3'" C7 C 0 1 N N R 58.582 10.608 -64.120 2.297 2.461 -0.100 "C3'" 6NQ 23 6NQ "O3'" O11 O 0 1 N N N 58.656 10.965 -65.498 2.622 3.379 0.946 "O3'" 6NQ 24 6NQ "C2'" C8 C 0 1 N N R 60.000 10.681 -63.528 3.457 1.461 -0.323 "C2'" 6NQ 25 6NQ BR BR1 BR 0 0 N N N 61.327 10.450 -64.978 5.143 2.170 0.398 BR 6NQ 26 6NQ "C1'" C9 C 0 1 N N R 60.068 12.113 -62.997 2.984 0.228 0.487 "C1'" 6NQ 27 6NQ N9 N4 N 0 1 Y N N 60.993 12.220 -61.884 3.601 -0.997 -0.028 N9 6NQ 28 6NQ N7 N5 N 0 1 Y N N 61.837 11.946 -59.820 3.879 -2.835 -1.171 N7 6NQ 29 6NQ N6 N6 N 0 1 N N N 64.609 13.112 -59.158 6.406 -4.573 -0.961 N6 6NQ 30 6NQ C2 C10 C 0 1 Y N N 63.991 13.947 -62.524 6.905 -1.816 1.259 C2 6NQ 31 6NQ H1 H1 H 0 1 N N N 59.947 11.164 -60.327 2.086 -1.735 -1.397 H1 6NQ 32 6NQ H2 H2 H 0 1 N N N 56.290 5.063 -59.917 -8.866 -2.385 2.159 H2 6NQ 33 6NQ H3 H3 H 0 1 N N N 53.516 3.765 -61.637 -7.531 -2.665 -0.688 H3 6NQ 34 6NQ H4 H4 H 0 1 N N N 53.820 9.933 -61.954 -5.728 1.867 0.859 H4 6NQ 35 6NQ H5 H5 H 0 1 N N N 53.965 7.277 -59.780 -5.326 -1.935 0.898 H5 6NQ 36 6NQ H6 H6 H 0 1 N N N 56.622 8.783 -58.877 -2.063 -0.615 -2.400 H6 6NQ 37 6NQ H7 H7 H 0 1 N N N 56.278 11.733 -61.723 0.244 1.425 -1.656 H7 6NQ 38 6NQ H8 H8 H 0 1 N N N 56.108 10.322 -62.822 -0.313 2.827 -0.712 H8 6NQ 39 6NQ H9 H9 H 0 1 N N N 57.242 12.275 -63.911 0.786 1.825 1.323 H9 6NQ 40 6NQ H10 H10 H 0 1 N N N 58.177 9.594 -63.990 2.072 2.996 -1.022 H10 6NQ 41 6NQ H11 H11 H 0 1 N N N 57.788 10.926 -65.883 3.400 3.923 0.764 H11 6NQ 42 6NQ H12 H12 H 0 1 N N N 60.195 9.916 -62.762 3.560 1.215 -1.380 H12 6NQ 43 6NQ H13 H13 H 0 1 N N N 60.334 12.807 -63.808 3.208 0.355 1.546 H13 6NQ 44 6NQ H14 H14 H 0 1 N N N 65.499 13.566 -59.210 5.731 -4.903 -1.575 H14 6NQ 45 6NQ H15 H15 H 0 1 N N N 64.054 13.547 -58.448 7.233 -5.065 -0.839 H15 6NQ 46 6NQ H16 H16 H 0 1 N N N 64.534 14.465 -63.301 7.674 -1.473 1.935 H16 6NQ 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6NQ "O3'" "C3'" SING N N 1 6NQ BR "C2'" SING N N 2 6NQ "C3'" "C2'" SING N N 3 6NQ "C3'" "C4'" SING N N 4 6NQ "C2'" "C1'" SING N N 5 6NQ "C4'" "O4'" SING N N 6 6NQ "C4'" "C5'" SING N N 7 6NQ O2B PB DOUB N N 8 6NQ "C1'" "O4'" SING N N 9 6NQ "C1'" N9 SING N N 10 6NQ N3 C2 DOUB Y N 11 6NQ N3 C4 SING Y N 12 6NQ C2 N1 SING Y N 13 6NQ "C5'" "O5'" SING N N 14 6NQ N9 C4 SING Y N 15 6NQ N9 C8 SING Y N 16 6NQ C4 C5 DOUB Y N 17 6NQ O3G PG DOUB N N 18 6NQ O3A PB SING N N 19 6NQ O3A PA SING N N 20 6NQ PB O1B SING N N 21 6NQ PB N3B SING N N 22 6NQ "O5'" PA SING N N 23 6NQ N1 C6 DOUB Y N 24 6NQ O2G PG SING N N 25 6NQ PA O2A DOUB N N 26 6NQ PA O1A SING N N 27 6NQ PG N3B SING N N 28 6NQ PG O1G SING N N 29 6NQ C8 N7 DOUB Y N 30 6NQ C5 C6 SING Y N 31 6NQ C5 N7 SING Y N 32 6NQ C6 N6 SING N N 33 6NQ C8 H1 SING N N 34 6NQ O1G H2 SING N N 35 6NQ O2G H3 SING N N 36 6NQ O1B H4 SING N N 37 6NQ N3B H5 SING N N 38 6NQ O1A H6 SING N N 39 6NQ "C5'" H7 SING N N 40 6NQ "C5'" H8 SING N N 41 6NQ "C4'" H9 SING N N 42 6NQ "C3'" H10 SING N N 43 6NQ "O3'" H11 SING N N 44 6NQ "C2'" H12 SING N N 45 6NQ "C1'" H13 SING N N 46 6NQ N6 H14 SING N N 47 6NQ N6 H15 SING N N 48 6NQ C2 H16 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6NQ SMILES ACDLabs 12.01 "c12c(c(N)ncn1)ncn2C3OC(COP(=O)(O)OP(O)(NP(O)(O)=O)=O)C(C3Br)O" 6NQ InChI InChI 1.03 "InChI=1S/C10H16BrN6O11P3/c11-5-7(18)4(1-26-31(24,25)28-30(22,23)16-29(19,20)21)27-10(5)17-3-15-6-8(12)13-2-14-9(6)17/h2-5,7,10,18H,1H2,(H,24,25)(H2,12,13,14)(H4,16,19,20,21,22,23)/t4-,5-,7-,10-/m1/s1" 6NQ InChIKey InChI 1.03 GLCRVGHVCJLAHS-QYYRPYCUSA-N 6NQ SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3Br" 6NQ SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3Br" 6NQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)Br)N" 6NQ SMILES "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)Br)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6NQ "SYSTEMATIC NAME" ACDLabs 12.01 "2'-bromo-2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]adenosine" 6NQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-bromanyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6NQ "Create component" 2016-05-11 EBI 6NQ "Initial release" 2017-04-05 RCSB #