data_6S8 # _chem_comp.id 6S8 _chem_comp.name "(~{Z})-~{N}-[(~{E},2~{S},3~{R})-1-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-octadec-4-en-2-yl]octadec-9-enamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C42 H79 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-(9Z-octadecenoyl)-1-beta-galactosyl-sphing-4-enine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-06-13 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 726.079 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6S8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5KDI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6S8 C1 C1 C 0 1 N N N 55.258 15.352 18.895 3.519 3.802 -0.641 C1 6S8 1 6S8 C2 C2 C 0 1 N N S 55.788 15.144 20.296 3.123 2.440 -0.067 C2 6S8 2 6S8 N2 N1 N 0 1 N N N 56.017 13.721 20.502 1.732 2.490 0.392 N2 6S8 3 6S8 C3 C3 C 0 1 N N R 54.751 15.671 21.329 4.037 2.098 1.111 C3 6S8 4 6S8 O3 O1 O 0 1 N N N 54.520 17.061 21.015 5.400 2.135 0.682 O3 6S8 5 6S8 C4 C4 C 0 1 N N N 55.281 15.510 22.706 3.707 0.718 1.618 C4 6S8 6 6S8 C5 C5 C 0 1 N N N 54.642 14.755 23.603 4.648 -0.190 1.705 C5 6S8 7 6S8 C6 C6 C 0 1 N N N 55.064 14.527 25.028 4.318 -1.570 2.213 C6 6S8 8 6S8 C7 C7 C 0 1 N N N 56.375 15.116 25.483 4.760 -2.612 1.183 C7 6S8 9 6S8 C8 C8 C 0 1 N N N 56.235 15.169 26.979 4.425 -4.013 1.699 C8 6S8 10 6S8 C9 C9 C 0 1 N N N 57.597 15.032 27.554 4.868 -5.055 0.669 C9 6S8 11 6S8 C10 C10 C 0 1 N N N 57.994 13.580 27.525 4.533 -6.456 1.185 C10 6S8 12 6S8 C11 C11 C 0 1 N N N 58.180 13.038 28.955 4.975 -7.497 0.155 C11 6S8 13 6S8 C12 C12 C 0 1 N N N 59.147 11.868 28.909 4.640 -8.898 0.670 C12 6S8 14 6S8 C13 C13 C 0 1 N N N 58.680 10.592 29.594 5.083 -9.940 -0.359 C13 6S8 15 6S8 C14 C14 C 0 1 N N N 58.768 10.587 31.111 4.748 -11.341 0.156 C14 6S8 16 6S8 C15 C15 C 0 1 N N N 59.095 9.187 31.653 5.190 -12.382 -0.873 C15 6S8 17 6S8 C16 C16 C 0 1 N N N 58.246 8.645 32.789 4.855 -13.783 -0.358 C16 6S8 18 6S8 C17 C17 C 0 1 N N N 58.935 8.175 34.080 5.298 -14.825 -1.388 C17 6S8 19 6S8 C18 C18 C 0 1 N N N 59.828 6.948 33.973 4.963 -16.226 -0.872 C18 6S8 20 6S8 C1A C19 C 0 1 N N R 53.830 14.218 17.325 3.868 6.093 -0.031 C1A 6S8 21 6S8 O1A O2 O 0 1 N N N 54.050 14.631 18.657 3.511 4.779 0.401 O1A 6S8 22 6S8 C2A C20 C 0 1 N N R 52.901 13.036 17.310 3.707 7.075 1.132 C2A 6S8 23 6S8 O2A O3 O 0 1 N N N 53.534 11.956 18.023 2.336 7.116 1.535 O2A 6S8 24 6S8 C3A C21 C 0 1 N N S 52.475 12.668 15.890 4.149 8.470 0.678 C3A 6S8 25 6S8 O3A O4 O 0 1 N N N 51.491 11.660 15.945 4.071 9.378 1.778 O3A 6S8 26 6S8 C4A C22 C 0 1 N N R 51.961 13.905 15.179 5.594 8.396 0.176 C4A 6S8 27 6S8 O4A O5 O 0 1 N N N 50.662 14.262 15.645 6.454 8.008 1.249 O4A 6S8 28 6S8 O5A O6 O 0 1 N N N 53.326 17.399 14.938 7.201 6.365 -2.545 O5A 6S8 29 6S8 C5M C23 C 0 1 N N R 52.969 15.033 15.293 5.683 7.364 -0.951 C5M 6S8 30 6S8 C6A C24 C 0 1 N N N 52.464 16.285 14.625 7.135 7.241 -1.418 C6A 6S8 31 6S8 O6A O7 O 0 1 N N N 53.208 15.306 16.677 5.228 6.097 -0.471 O6A 6S8 32 6S8 CAA C25 C 0 1 N N N 57.185 13.224 20.880 0.727 2.270 -0.478 CAA 6S8 33 6S8 OAA O8 O 0 1 N N N 58.220 13.874 21.003 0.973 2.032 -1.641 OAA 6S8 34 6S8 CAB C26 C 0 1 N N N 57.174 11.740 21.092 -0.703 2.321 -0.005 CAB 6S8 35 6S8 CAC C27 C 0 1 N N N 56.742 11.747 22.588 -1.640 2.039 -1.182 CAC 6S8 36 6S8 CAD C28 C 0 1 N N N 57.686 10.938 23.366 -3.092 2.091 -0.702 CAD 6S8 37 6S8 CAE C29 C 0 1 N N N 56.882 9.802 23.932 -4.028 1.809 -1.878 CAE 6S8 38 6S8 CAF C30 C 0 1 N N N 57.875 8.970 24.730 -5.480 1.861 -1.398 CAF 6S8 39 6S8 CAG C31 C 0 1 N N N 57.733 7.477 24.383 -6.416 1.579 -2.575 CAG 6S8 40 6S8 CAH C32 C 0 1 N N N 57.902 6.604 25.632 -7.868 1.630 -2.095 CAH 6S8 41 6S8 CAI C33 C 0 1 N N N 59.338 6.715 26.053 -8.790 1.353 -3.254 CAI 6S8 42 6S8 CAJ C34 C 0 1 N N N 59.739 6.774 27.326 -9.708 0.424 -3.153 CAJ 6S8 43 6S8 CAK C35 C 0 1 N N N 58.838 6.700 28.517 -9.944 -0.261 -1.832 CAK 6S8 44 6S8 CAL C36 C 0 1 N N N 59.836 6.234 29.584 -11.427 -0.168 -1.466 CAL 6S8 45 6S8 CAM C37 C 0 1 N N N 59.205 5.561 30.785 -11.667 -0.863 -0.125 CAM 6S8 46 6S8 CAN C38 C 0 1 N N N 58.417 4.358 30.359 -13.149 -0.769 0.241 CAN 6S8 47 6S8 CAO C39 C 0 1 N N N 58.390 3.344 31.479 -13.389 -1.465 1.582 CAO 6S8 48 6S8 CAP C40 C 0 1 N N N 59.491 2.326 31.366 -14.872 -1.371 1.948 CAP 6S8 49 6S8 CAQ C41 C 0 1 N N N 58.965 0.931 31.475 -15.111 -2.066 3.289 CAQ 6S8 50 6S8 CAR C42 C 0 1 N N N 59.781 0.087 30.580 -16.594 -1.972 3.655 CAR 6S8 51 6S8 H1 H1 H 0 1 N N N 56.019 15.014 18.176 4.518 3.738 -1.072 H1 6S8 52 6S8 H2 H2 H 0 1 N N N 55.064 16.425 18.746 2.807 4.090 -1.416 H2 6S8 53 6S8 H3 H3 H 0 1 N N N 56.728 15.702 20.419 3.223 1.677 -0.839 H3 6S8 54 6S8 H4 H4 H 0 1 N N N 55.257 13.089 20.351 1.536 2.680 1.323 H4 6S8 55 6S8 H5 H5 H 0 1 N N N 53.820 15.096 21.220 3.888 2.824 1.910 H5 6S8 56 6S8 H6 H6 H 0 1 N N N 53.889 17.423 21.626 5.587 1.572 -0.082 H6 6S8 57 6S8 H7 H7 H 0 1 N N N 56.196 16.010 22.986 2.696 0.478 1.911 H7 6S8 58 6S8 H8 H8 H 0 1 N N N 53.739 14.263 23.275 5.659 0.050 1.413 H8 6S8 59 6S8 H9 H9 H 0 1 N N N 54.277 14.945 25.673 4.839 -1.745 3.154 H9 6S8 60 6S8 H10 H10 H 0 1 N N N 55.124 13.439 25.181 3.242 -1.651 2.373 H10 6S8 61 6S8 H11 H11 H 0 1 N N N 57.218 14.473 25.189 4.239 -2.437 0.242 H11 6S8 62 6S8 H12 H12 H 0 1 N N N 56.519 16.123 25.066 5.835 -2.531 1.023 H12 6S8 63 6S8 H13 H13 H 0 1 N N N 55.793 16.130 27.282 4.946 -4.188 2.640 H13 6S8 64 6S8 H14 H14 H 0 1 N N N 55.595 14.345 27.327 3.350 -4.094 1.859 H14 6S8 65 6S8 H15 H15 H 0 1 N N N 58.310 15.622 26.959 4.346 -4.879 -0.272 H15 6S8 66 6S8 H16 H16 H 0 1 N N N 57.598 15.394 28.593 5.943 -4.974 0.509 H16 6S8 67 6S8 H17 H17 H 0 1 N N N 57.208 13.001 27.019 5.054 -6.631 2.126 H17 6S8 68 6S8 H18 H18 H 0 1 N N N 58.940 13.475 26.973 3.457 -6.536 1.344 H18 6S8 69 6S8 H19 H19 H 0 1 N N N 58.587 13.830 29.601 4.454 -7.322 -0.786 H19 6S8 70 6S8 H20 H20 H 0 1 N N N 57.211 12.702 29.353 6.050 -7.416 -0.005 H20 6S8 71 6S8 H21 H21 H 0 1 N N N 59.340 11.632 27.852 5.161 -9.073 1.612 H21 6S8 72 6S8 H22 H22 H 0 1 N N N 60.083 12.186 29.391 3.565 -8.979 0.830 H22 6S8 73 6S8 H23 H23 H 0 1 N N N 57.629 10.425 29.316 4.561 -9.765 -1.300 H23 6S8 74 6S8 H24 H24 H 0 1 N N N 59.295 9.762 29.217 6.158 -9.859 -0.519 H24 6S8 75 6S8 H25 H25 H 0 1 N N N 59.558 11.285 31.425 5.269 -11.516 1.097 H25 6S8 76 6S8 H26 H26 H 0 1 N N N 57.803 10.914 31.526 3.672 -11.422 0.316 H26 6S8 77 6S8 H27 H27 H 0 1 N N N 59.006 8.482 30.813 4.669 -12.207 -1.814 H27 6S8 78 6S8 H28 H28 H 0 1 N N N 60.137 9.208 32.005 6.265 -12.302 -1.033 H28 6S8 79 6S8 H29 H29 H 0 1 N N N 57.541 9.441 33.072 5.377 -13.959 0.583 H29 6S8 80 6S8 H30 H30 H 0 1 N N N 57.687 7.785 32.391 3.780 -13.865 -0.198 H30 6S8 81 6S8 H31 H31 H 0 1 N N N 59.554 9.006 34.448 4.776 -14.650 -2.329 H31 6S8 82 6S8 H32 H32 H 0 1 N N N 58.148 7.951 34.815 6.373 -14.744 -1.547 H32 6S8 83 6S8 H33 H33 H 0 1 N N N 60.257 6.719 34.960 3.888 -16.307 -0.712 H33 6S8 84 6S8 H34 H34 H 0 1 N N N 59.233 6.091 33.624 5.278 -16.968 -1.605 H34 6S8 85 6S8 H35 H35 H 0 1 N N N 60.640 7.147 33.258 5.484 -16.401 0.069 H35 6S8 86 6S8 H36 H36 H 0 1 N N N 54.777 13.952 16.832 3.220 6.394 -0.854 H36 6S8 87 6S8 H37 H37 H 0 1 N N N 51.992 13.324 17.858 4.323 6.751 1.970 H37 6S8 88 6S8 H38 H38 H 0 1 N N N 53.773 12.249 18.895 1.987 6.265 1.831 H38 6S8 89 6S8 H39 H39 H 0 1 N N N 53.359 12.299 15.349 3.499 8.815 -0.126 H39 6S8 90 6S8 H40 H40 H 0 1 N N N 51.841 10.900 16.395 3.184 9.468 2.152 H40 6S8 91 6S8 H41 H41 H 0 1 N N N 51.883 13.652 14.111 5.900 9.373 -0.201 H41 6S8 92 6S8 H42 H42 H 0 1 N N N 50.076 13.520 15.550 6.448 8.618 1.999 H42 6S8 93 6S8 H43 H43 H 0 1 N N N 52.999 18.183 14.512 8.094 6.240 -2.894 H43 6S8 94 6S8 H44 H44 H 0 1 N N N 53.905 14.722 14.805 5.058 7.681 -1.786 H44 6S8 95 6S8 H45 H45 H 0 1 N N N 51.446 16.502 14.981 7.744 6.838 -0.608 H45 6S8 96 6S8 H46 H46 H 0 1 N N N 52.447 16.134 13.536 7.510 8.224 -1.699 H46 6S8 97 6S8 H47 H47 H 0 1 N N N 56.442 11.231 20.448 -0.857 1.570 0.770 H47 6S8 98 6S8 H48 H48 H 0 1 N N N 58.167 11.289 20.946 -0.917 3.310 0.401 H48 6S8 99 6S8 H49 H49 H 0 1 N N N 56.743 12.780 22.967 -1.486 2.791 -1.956 H49 6S8 100 6S8 H50 H50 H 0 1 N N N 55.731 11.324 22.681 -1.426 1.050 -1.587 H50 6S8 101 6S8 H51 H51 H 0 1 N N N 58.487 10.554 22.717 -3.245 1.340 0.073 H51 6S8 102 6S8 H52 H52 H 0 1 N N N 58.126 11.537 24.177 -3.305 3.080 -0.296 H52 6S8 103 6S8 H53 H53 H 0 1 N N N 56.084 10.183 24.586 -3.874 2.560 -2.653 H53 6S8 104 6S8 H54 H54 H 0 1 N N N 56.439 9.203 23.123 -3.814 0.820 -2.284 H54 6S8 105 6S8 H55 H55 H 0 1 N N N 58.897 9.301 24.493 -5.633 1.109 -0.624 H55 6S8 106 6S8 H56 H56 H 0 1 N N N 57.684 9.111 25.804 -5.693 2.850 -0.993 H56 6S8 107 6S8 H57 H57 H 0 1 N N N 56.736 7.301 23.953 -6.263 2.330 -3.350 H57 6S8 108 6S8 H58 H58 H 0 1 N N N 58.503 7.204 23.646 -6.203 0.590 -2.981 H58 6S8 109 6S8 H59 H59 H 0 1 N N N 57.244 6.964 26.436 -8.022 0.879 -1.321 H59 6S8 110 6S8 H60 H60 H 0 1 N N N 57.657 5.558 25.398 -8.082 2.619 -1.690 H60 6S8 111 6S8 H61 H61 H 0 1 N N N 60.092 6.749 25.281 -8.695 1.920 -4.168 H61 6S8 112 6S8 H62 H62 H 0 1 N N N 60.798 6.884 27.509 -10.296 0.148 -4.016 H62 6S8 113 6S8 H63 H63 H 0 1 N N N 58.407 7.682 28.763 -9.655 -1.309 -1.909 H63 6S8 114 6S8 H64 H64 H 0 1 N N N 58.028 5.970 28.370 -9.348 0.224 -1.059 H64 6S8 115 6S8 H65 H65 H 0 1 N N N 60.530 5.521 29.116 -11.717 0.881 -1.389 H65 6S8 116 6S8 H66 H66 H 0 1 N N N 60.396 7.112 29.937 -12.023 -0.653 -2.239 H66 6S8 117 6S8 H67 H67 H 0 1 N N N 59.996 5.247 31.482 -11.377 -1.911 -0.202 H67 6S8 118 6S8 H68 H68 H 0 1 N N N 58.535 6.273 31.288 -11.071 -0.377 0.648 H68 6S8 119 6S8 H69 H69 H 0 1 N N N 57.388 4.662 30.116 -13.439 0.279 0.318 H69 6S8 120 6S8 H70 H70 H 0 1 N N N 58.886 3.909 29.471 -13.745 -1.255 -0.532 H70 6S8 121 6S8 H71 H71 H 0 1 N N N 58.498 3.874 32.437 -13.100 -2.513 1.505 H71 6S8 122 6S8 H72 H72 H 0 1 N N N 57.423 2.820 31.457 -12.793 -0.979 2.355 H72 6S8 123 6S8 H73 H73 H 0 1 N N N 60.219 2.497 32.173 -15.161 -0.323 2.025 H73 6S8 124 6S8 H74 H74 H 0 1 N N N 59.988 2.445 30.392 -15.468 -1.856 1.175 H74 6S8 125 6S8 H75 H75 H 0 1 N N N 57.910 0.900 31.164 -14.822 -3.114 3.212 H75 6S8 126 6S8 H76 H76 H 0 1 N N N 59.052 0.575 32.512 -14.515 -1.581 4.062 H76 6S8 127 6S8 H77 H77 H 0 1 N N N 59.425 -0.953 30.630 -16.884 -0.924 3.732 H77 6S8 128 6S8 H78 H78 H 0 1 N N N 59.692 0.455 29.547 -17.190 -2.458 2.882 H78 6S8 129 6S8 H79 H79 H 0 1 N N N 60.834 0.130 30.895 -16.765 -2.468 4.610 H79 6S8 130 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6S8 C6A O5A SING N N 1 6S8 C6A C5M SING N N 2 6S8 C4A C5M SING N N 3 6S8 C4A O4A SING N N 4 6S8 C4A C3A SING N N 5 6S8 C5M O6A SING N N 6 6S8 C3A O3A SING N N 7 6S8 C3A C2A SING N N 8 6S8 O6A C1A SING N N 9 6S8 C2A C1A SING N N 10 6S8 C2A O2A SING N N 11 6S8 C1A O1A SING N N 12 6S8 O1A C1 SING N N 13 6S8 C1 C2 SING N N 14 6S8 C2 N2 SING N N 15 6S8 C2 C3 SING N N 16 6S8 N2 CAA SING N N 17 6S8 CAA OAA DOUB N N 18 6S8 CAA CAB SING N N 19 6S8 O3 C3 SING N N 20 6S8 CAB CAC SING N N 21 6S8 C3 C4 SING N N 22 6S8 CAC CAD SING N N 23 6S8 C4 C5 DOUB N E 24 6S8 CAD CAE SING N N 25 6S8 C5 C6 SING N N 26 6S8 CAE CAF SING N N 27 6S8 CAG CAF SING N N 28 6S8 CAG CAH SING N N 29 6S8 C6 C7 SING N N 30 6S8 C7 C8 SING N N 31 6S8 CAH CAI SING N N 32 6S8 CAI CAJ DOUB N Z 33 6S8 C8 C9 SING N N 34 6S8 CAJ CAK SING N N 35 6S8 C10 C9 SING N N 36 6S8 C10 C11 SING N N 37 6S8 CAK CAL SING N N 38 6S8 C12 C11 SING N N 39 6S8 C12 C13 SING N N 40 6S8 CAL CAM SING N N 41 6S8 C13 C14 SING N N 42 6S8 CAN CAM SING N N 43 6S8 CAN CAO SING N N 44 6S8 CAR CAQ SING N N 45 6S8 C14 C15 SING N N 46 6S8 CAP CAQ SING N N 47 6S8 CAP CAO SING N N 48 6S8 C15 C16 SING N N 49 6S8 C16 C17 SING N N 50 6S8 C18 C17 SING N N 51 6S8 C1 H1 SING N N 52 6S8 C1 H2 SING N N 53 6S8 C2 H3 SING N N 54 6S8 N2 H4 SING N N 55 6S8 C3 H5 SING N N 56 6S8 O3 H6 SING N N 57 6S8 C4 H7 SING N N 58 6S8 C5 H8 SING N N 59 6S8 C6 H9 SING N N 60 6S8 C6 H10 SING N N 61 6S8 C7 H11 SING N N 62 6S8 C7 H12 SING N N 63 6S8 C8 H13 SING N N 64 6S8 C8 H14 SING N N 65 6S8 C9 H15 SING N N 66 6S8 C9 H16 SING N N 67 6S8 C10 H17 SING N N 68 6S8 C10 H18 SING N N 69 6S8 C11 H19 SING N N 70 6S8 C11 H20 SING N N 71 6S8 C12 H21 SING N N 72 6S8 C12 H22 SING N N 73 6S8 C13 H23 SING N N 74 6S8 C13 H24 SING N N 75 6S8 C14 H25 SING N N 76 6S8 C14 H26 SING N N 77 6S8 C15 H27 SING N N 78 6S8 C15 H28 SING N N 79 6S8 C16 H29 SING N N 80 6S8 C16 H30 SING N N 81 6S8 C17 H31 SING N N 82 6S8 C17 H32 SING N N 83 6S8 C18 H33 SING N N 84 6S8 C18 H34 SING N N 85 6S8 C18 H35 SING N N 86 6S8 C1A H36 SING N N 87 6S8 C2A H37 SING N N 88 6S8 O2A H38 SING N N 89 6S8 C3A H39 SING N N 90 6S8 O3A H40 SING N N 91 6S8 C4A H41 SING N N 92 6S8 O4A H42 SING N N 93 6S8 O5A H43 SING N N 94 6S8 C5M H44 SING N N 95 6S8 C6A H45 SING N N 96 6S8 C6A H46 SING N N 97 6S8 CAB H47 SING N N 98 6S8 CAB H48 SING N N 99 6S8 CAC H49 SING N N 100 6S8 CAC H50 SING N N 101 6S8 CAD H51 SING N N 102 6S8 CAD H52 SING N N 103 6S8 CAE H53 SING N N 104 6S8 CAE H54 SING N N 105 6S8 CAF H55 SING N N 106 6S8 CAF H56 SING N N 107 6S8 CAG H57 SING N N 108 6S8 CAG H58 SING N N 109 6S8 CAH H59 SING N N 110 6S8 CAH H60 SING N N 111 6S8 CAI H61 SING N N 112 6S8 CAJ H62 SING N N 113 6S8 CAK H63 SING N N 114 6S8 CAK H64 SING N N 115 6S8 CAL H65 SING N N 116 6S8 CAL H66 SING N N 117 6S8 CAM H67 SING N N 118 6S8 CAM H68 SING N N 119 6S8 CAN H69 SING N N 120 6S8 CAN H70 SING N N 121 6S8 CAO H71 SING N N 122 6S8 CAO H72 SING N N 123 6S8 CAP H73 SING N N 124 6S8 CAP H74 SING N N 125 6S8 CAQ H75 SING N N 126 6S8 CAQ H76 SING N N 127 6S8 CAR H77 SING N N 128 6S8 CAR H78 SING N N 129 6S8 CAR H79 SING N N 130 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6S8 InChI InChI 1.03 "InChI=1S/C42H79NO8/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-38(46)43-35(34-50-42-41(49)40(48)39(47)37(33-44)51-42)36(45)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h17-18,29,31,35-37,39-42,44-45,47-49H,3-16,19-28,30,32-34H2,1-2H3,(H,43,46)/b18-17-,31-29+/t35-,36+,37+,39-,40-,41+,42+/m0/s1" 6S8 InChIKey InChI 1.03 MVGFIPNJBNBHNC-VTRIZHIOSA-N 6S8 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCC/C=C/[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCC\C=C/CCCCCCCC" 6S8 SMILES CACTVS 3.385 "CCCCCCCCCCCCCC=C[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCCC=CCCCCCCCC" 6S8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCCCCCCCCCCCC/C=C/[C@H]([C@H](CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCC/C=C\CCCCCCCC)O" 6S8 SMILES "OpenEye OEToolkits" 2.0.5 "CCCCCCCCCCCCCC=CC(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCCC=CCCCCCCCC)O" # _pdbx_chem_comp_identifier.comp_id 6S8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "(~{Z})-~{N}-[(~{E},2~{S},3~{R})-1-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-octadec-4-en-2-yl]octadec-9-enamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6S8 "Create component" 2016-06-13 RCSB 6S8 "Initial release" 2017-12-13 RCSB 6S8 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6S8 _pdbx_chem_comp_synonyms.name "N-(9Z-octadecenoyl)-1-beta-galactosyl-sphing-4-enine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##