data_6V0 # _chem_comp.id 6V0 _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(5-aminocarbonyl-2~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H29 N7 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 6DHNAD _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-06-30 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 665.441 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6V0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5KKA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6V0 PA P1 P 0 1 N N N -24.252 -24.799 24.616 0.719 1.540 -1.487 PA 6V0 1 6V0 O1A O1 O 0 1 N N N -25.648 -24.440 25.020 -0.015 2.970 -1.410 O1A 6V0 2 6V0 O2A O2 O 0 1 N N N -23.886 -26.269 24.835 1.231 1.322 -2.859 O2A 6V0 3 6V0 O5B O3 O 0 1 N N N -23.999 -24.312 23.050 1.947 1.510 -0.446 O5B 6V0 4 6V0 C5B C1 C 0 1 N N N -22.795 -24.609 22.338 3.095 2.352 -0.572 C5B 6V0 5 6V0 C4B C2 C 0 1 N N R -23.142 -24.798 20.961 4.063 2.069 0.578 C4B 6V0 6 6V0 O4B O4 O 0 1 N N N -21.877 -25.013 20.189 4.599 0.741 0.450 O4B 6V0 7 6V0 C3B C3 C 0 1 N N S -24.029 -26.081 20.699 5.248 3.052 0.519 C3B 6V0 8 6V0 O3B O5 O 0 1 N N N -25.385 -25.619 20.128 5.312 3.831 1.715 O3B 6V0 9 6V0 C2B C4 C 0 1 N N R -23.319 -26.837 19.915 6.493 2.139 0.398 C2B 6V0 10 6V0 O2B O6 O 0 1 N N N -24.122 -27.597 18.928 7.564 2.626 1.209 O2B 6V0 11 6V0 C1B C5 C 0 1 N N R -22.301 -25.758 19.203 5.956 0.785 0.940 C1B 6V0 12 6V0 N9A N1 N 0 1 Y N N -21.175 -26.372 18.521 6.737 -0.332 0.402 N9A 6V0 13 6V0 C8A C6 C 0 1 Y N N -20.380 -27.339 18.946 6.427 -1.077 -0.697 C8A 6V0 14 6V0 N7A N2 N 0 1 Y N N -19.478 -27.598 18.000 7.339 -1.985 -0.890 N7A 6V0 15 6V0 C5A C7 C 0 1 Y N N -19.721 -26.783 16.962 8.289 -1.881 0.070 C5A 6V0 16 6V0 C6A C8 C 0 1 Y N N -19.129 -26.586 15.697 9.479 -2.570 0.361 C6A 6V0 17 6V0 N6A N3 N 0 1 N N N -18.017 -27.404 15.298 9.896 -3.627 -0.428 N6A 6V0 18 6V0 N1A N4 N 0 1 Y N N -19.650 -25.657 14.872 10.194 -2.181 1.412 N1A 6V0 19 6V0 C2A C9 C 0 1 Y N N -20.692 -24.924 15.225 9.803 -1.173 2.171 C2A 6V0 20 6V0 N3A N5 N 0 1 Y N N -21.283 -25.084 16.407 8.696 -0.500 1.936 N3A 6V0 21 6V0 C4A C10 C 0 1 Y N N -20.815 -26.004 17.297 7.917 -0.816 0.907 C4A 6V0 22 6V0 O3 O7 O 0 1 N N N -23.158 -24.051 25.557 -0.329 0.377 -1.114 O3 6V0 23 6V0 PN P2 P 0 1 N N N -23.193 -22.461 25.949 -1.493 -0.383 -1.927 PN 6V0 24 6V0 O1N O8 O 0 1 N N N -23.893 -21.666 24.965 -2.219 0.590 -2.775 O1N 6V0 25 6V0 O2N O9 O 0 1 N N N -23.806 -22.317 27.326 -0.840 -1.523 -2.858 O2N 6V0 26 6V0 O5D O10 O 0 1 N N N -21.614 -22.164 26.071 -2.519 -1.060 -0.888 O5D 6V0 27 6V0 C5D C11 C 0 1 N N N -20.834 -22.122 24.898 -3.719 -1.720 -1.298 C5D 6V0 28 6V0 C4D C12 C 0 1 N N R -19.445 -21.595 25.244 -4.457 -2.247 -0.065 C4D 6V0 29 6V0 O4D O11 O 0 1 N N N -19.477 -20.399 25.747 -4.923 -1.146 0.733 O4D 6V0 30 6V0 C3D C13 C 0 1 N N S -18.738 -22.568 26.362 -5.696 -3.053 -0.501 C3D 6V0 31 6V0 O3D O12 O 0 1 N N N -17.507 -22.947 25.731 -5.606 -4.400 -0.033 O3D 6V0 32 6V0 C2D C14 C 0 1 N N R -18.349 -21.853 27.338 -6.881 -2.322 0.175 C2D 6V0 33 6V0 O2D O13 O 0 1 N N N -16.881 -22.191 27.458 -7.827 -3.259 0.696 O2D 6V0 34 6V0 C1D C15 C 0 1 N N R -18.411 -20.389 26.832 -6.177 -1.553 1.321 C1D 6V0 35 6V0 N1N N6 N 0 1 N N N -18.731 -19.475 27.773 -6.965 -0.383 1.717 N1N 6V0 36 6V0 C2N C16 C 0 1 N N N -18.092 -18.174 27.615 -7.242 0.607 0.814 C2N 6V0 37 6V0 C3N C17 C 0 1 N N N -18.287 -17.062 28.594 -8.422 1.288 0.937 C3N 6V0 38 6V0 C7N C18 C 0 1 N N N -17.330 -15.851 28.460 -8.763 2.362 -0.002 C7N 6V0 39 6V0 O7N O14 O 0 1 N N N -17.379 -14.985 29.309 -7.993 2.654 -0.899 O7N 6V0 40 6V0 N7N N7 N 0 1 N N N -16.413 -15.770 27.332 -9.929 3.026 0.128 N7N 6V0 41 6V0 C4N C19 C 0 1 N N N -19.294 -17.178 29.650 -9.349 0.923 2.029 C4N 6V0 42 6V0 C5N C20 C 0 1 N N N -20.231 -18.327 29.543 -8.910 0.193 3.048 C5N 6V0 43 6V0 C6N C21 C 0 1 N N N -19.687 -19.635 28.934 -7.475 -0.255 3.088 C6N 6V0 44 6V0 H1 H1 H 0 1 N N N -26.089 -25.211 25.357 -0.376 3.181 -0.538 H1 6V0 45 6V0 H51A H2 H 0 0 N N N -22.338 -25.526 22.739 3.590 2.152 -1.522 H51A 6V0 46 6V0 H52A H3 H 0 0 N N N -22.086 -23.774 22.435 2.785 3.397 -0.537 H52A 6V0 47 6V0 H4B H4 H 0 1 N N N -23.672 -23.917 20.569 3.545 2.169 1.532 H4B 6V0 48 6V0 H3B H5 H 0 1 N N N -24.213 -26.563 21.670 5.164 3.700 -0.353 H3B 6V0 49 6V0 HO3A H6 H 0 0 N N N -25.830 -25.075 20.767 6.040 4.468 1.732 HO3A 6V0 50 6V0 H2B H7 H 0 1 N N N -22.694 -27.541 20.485 6.806 2.045 -0.642 H2B 6V0 51 6V0 HO2A H8 H 0 0 N N N -24.692 -28.205 19.384 7.872 3.510 0.965 HO2A 6V0 52 6V0 H1B H9 H 0 1 N N N -22.896 -25.179 18.481 5.971 0.775 2.030 H1B 6V0 53 6V0 H8A H10 H 0 1 N N N -20.450 -27.837 19.902 5.554 -0.935 -1.316 H8A 6V0 54 6V0 H62A H11 H 0 0 N N N -17.740 -27.160 14.369 9.366 -3.901 -1.192 H62A 6V0 55 6V0 H61A H12 H 0 0 N N N -17.252 -27.254 15.924 10.720 -4.095 -0.216 H61A 6V0 56 6V0 H2A H13 H 0 1 N N N -21.072 -24.180 14.540 10.414 -0.891 3.015 H2A 6V0 57 6V0 H2 H14 H 0 1 N N N -24.546 -21.723 27.283 -0.348 -2.196 -2.368 H2 6V0 58 6V0 H52N H15 H 0 0 N N N -21.309 -21.455 24.163 -4.358 -1.016 -1.830 H52N 6V0 59 6V0 H51N H16 H 0 0 N N N -20.750 -23.134 24.475 -3.469 -2.553 -1.955 H51N 6V0 60 6V0 H4D H17 H 0 1 N N N -18.822 -21.639 24.339 -3.791 -2.877 0.525 H4D 6V0 61 6V0 H3D H18 H 0 1 N N N -19.392 -23.420 26.599 -5.803 -3.031 -1.586 H3D 6V0 62 6V0 HO3N H19 H 0 0 N N N -17.018 -23.521 26.309 -6.360 -4.953 -0.280 HO3N 6V0 63 6V0 H2D H20 H 0 1 N N N -18.886 -21.978 28.290 -7.361 -1.633 -0.520 H2D 6V0 64 6V0 HO2N H21 H 0 0 N N N -16.499 -21.696 28.173 -8.229 -3.827 0.024 HO2N 6V0 65 6V0 H1D H22 H 0 1 N N N -17.444 -20.148 26.366 -6.005 -2.208 2.175 H1D 6V0 66 6V0 H2N H23 H 0 1 N N N -17.454 -18.008 26.759 -6.546 0.846 0.024 H2N 6V0 67 6V0 H72N H24 H 0 0 N N N -15.800 -14.985 27.241 -10.542 2.793 0.842 H72N 6V0 68 6V0 H71N H25 H 0 0 N N N -16.396 -16.500 26.648 -10.154 3.736 -0.493 H71N 6V0 69 6V0 H42N H26 H 0 0 N N N -19.353 -16.468 30.462 -10.378 1.249 1.999 H42N 6V0 70 6V0 H5N H28 H 0 1 N N N -21.254 -18.249 29.879 -9.583 -0.081 3.847 H5N 6V0 71 6V0 H382 H30 H 0 0 N N N -20.546 -20.227 28.584 -7.409 -1.219 3.592 H382 6V0 72 6V0 H6N H31 H 0 1 N N N -19.162 -20.185 29.729 -6.881 0.481 3.630 H6N 6V0 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6V0 N1A C2A DOUB Y N 1 6V0 N1A C6A SING Y N 2 6V0 C2A N3A SING Y N 3 6V0 N6A C6A SING N N 4 6V0 C6A C5A DOUB Y N 5 6V0 N3A C4A DOUB Y N 6 6V0 C5A C4A SING Y N 7 6V0 C5A N7A SING Y N 8 6V0 C4A N9A SING Y N 9 6V0 N7A C8A DOUB Y N 10 6V0 N9A C8A SING Y N 11 6V0 N9A C1B SING N N 12 6V0 O2B C2B SING N N 13 6V0 C1B C2B SING N N 14 6V0 C1B O4B SING N N 15 6V0 C2B C3B SING N N 16 6V0 O3B C3B SING N N 17 6V0 O4B C4B SING N N 18 6V0 C3B C4B SING N N 19 6V0 C4B C5B SING N N 20 6V0 C5B O5B SING N N 21 6V0 O5B PA SING N N 22 6V0 PA O2A DOUB N N 23 6V0 PA O1A SING N N 24 6V0 PA O3 SING N N 25 6V0 C5D C4D SING N N 26 6V0 C5D O5D SING N N 27 6V0 O1N PN DOUB N N 28 6V0 C4D O4D SING N N 29 6V0 C4D C3D SING N N 30 6V0 O3 PN SING N N 31 6V0 O3D C3D SING N N 32 6V0 O4D C1D SING N N 33 6V0 PN O5D SING N N 34 6V0 PN O2N SING N N 35 6V0 C3D C2D SING N N 36 6V0 C1D C2D SING N N 37 6V0 C1D N1N SING N N 38 6V0 N7N C7N SING N N 39 6V0 C2D O2D SING N N 40 6V0 C2N N1N SING N N 41 6V0 C2N C3N DOUB N N 42 6V0 N1N C6N SING N N 43 6V0 C7N C3N SING N N 44 6V0 C7N O7N DOUB N N 45 6V0 C3N C4N SING N N 46 6V0 C6N C5N SING N N 47 6V0 C5N C4N DOUB N N 48 6V0 O1A H1 SING N N 49 6V0 C5B H51A SING N N 50 6V0 C5B H52A SING N N 51 6V0 C4B H4B SING N N 52 6V0 C3B H3B SING N N 53 6V0 O3B HO3A SING N N 54 6V0 C2B H2B SING N N 55 6V0 O2B HO2A SING N N 56 6V0 C1B H1B SING N N 57 6V0 C8A H8A SING N N 58 6V0 N6A H62A SING N N 59 6V0 N6A H61A SING N N 60 6V0 C2A H2A SING N N 61 6V0 O2N H2 SING N N 62 6V0 C5D H52N SING N N 63 6V0 C5D H51N SING N N 64 6V0 C4D H4D SING N N 65 6V0 C3D H3D SING N N 66 6V0 O3D HO3N SING N N 67 6V0 C2D H2D SING N N 68 6V0 O2D HO2N SING N N 69 6V0 C1D H1D SING N N 70 6V0 C2N H2N SING N N 71 6V0 N7N H72N SING N N 72 6V0 N7N H71N SING N N 73 6V0 C4N H42N SING N N 74 6V0 C5N H5N SING N N 75 6V0 C6N H382 SING N N 76 6V0 C6N H6N SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6V0 InChI InChI 1.03 "InChI=1S/C21H29N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-2,4,7-8,10-11,13-16,20-21,29-32H,3,5-6H2,(H2,23,33)(H,34,35)(H,36,37)(H2,22,24,25)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1" 6V0 InChIKey InChI 1.03 QVQHBKNZCMZBKP-NNYOXOHSSA-N 6V0 SMILES_CANONICAL CACTVS 3.385 "NC(=O)C1=CN(CC=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" 6V0 SMILES CACTVS 3.385 "NC(=O)C1=CN(CC=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" 6V0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5CC=CC(=C5)C(=O)N)O)O)O)O)N" 6V0 SMILES "OpenEye OEToolkits" 2.0.5 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5CC=CC(=C5)C(=O)N)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id 6V0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(5-aminocarbonyl-2~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6V0 "Create component" 2016-06-30 RCSB 6V0 "Initial release" 2016-11-02 RCSB 6V0 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6V0 _pdbx_chem_comp_synonyms.name 6DHNAD _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##