data_6V6 # _chem_comp.id 6V6 _chem_comp.name "[(2~{S})-3-[[(2~{R})-2,3-bis(oxidanyl)propoxy]-oxidanyl-phosphoryl]oxy-2-hexadec-9-enoyloxy-propyl] hexadecanoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H73 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-07-01 _chem_comp.pdbx_modified_date 2016-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 720.954 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6V6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LFB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6V6 C2 C1 C 0 1 N N N 53.978 59.450 40.113 1.327 3.219 1.948 C2 6V6 1 6V6 C3 C2 C 0 1 N N N 57.522 61.436 38.506 -2.284 4.557 -1.663 C3 6V6 2 6V6 O3 O1 O 0 1 N N N 56.069 61.507 41.143 -0.763 5.322 0.959 O3 6V6 3 6V6 C4 C3 C 0 1 N N R 58.888 61.825 37.997 -3.345 3.724 -2.385 C4 6V6 4 6V6 C5 C4 C 0 1 N N N 58.840 62.824 36.862 -4.273 4.652 -3.171 C5 6V6 5 6V6 P1 P1 P 0 1 N N N 56.460 60.205 40.553 -0.274 4.245 0.070 P1 6V6 6 6V6 C1 C5 C 0 1 N N N 53.061 59.044 39.037 1.646 1.875 2.605 C1 6V6 7 6V6 O1 O2 O 0 1 N N N 55.286 59.750 39.558 0.310 3.037 0.961 O1 6V6 8 6V6 O2 O3 O 0 1 N N N 56.797 59.067 41.442 0.891 4.821 -0.881 O2 6V6 9 6V6 O4 O4 O 0 1 N N N 57.691 60.482 39.562 -1.489 3.704 -0.837 O4 6V6 10 6V6 O5 O5 O 0 1 N N N 59.649 62.351 39.081 -2.706 2.816 -3.285 O5 6V6 11 6V6 O6 O6 O 0 1 N N N 60.147 63.157 36.405 -5.332 3.886 -3.751 O6 6V6 12 6V6 H1 H1 H 0 1 N N N 53.580 60.345 40.614 0.977 3.920 2.706 H1 6V6 13 6V6 H2 H2 H 0 1 N N N 54.070 58.632 40.843 2.226 3.615 1.475 H2 6V6 14 6V6 H3 H3 H 0 1 N N N 57.000 62.326 38.888 -1.646 5.049 -2.397 H3 6V6 15 6V6 H4 H4 H 0 1 N N N 56.935 60.988 37.691 -2.772 5.309 -1.043 H4 6V6 16 6V6 H5 H5 H 0 1 N N N 59.380 60.915 37.624 -3.926 3.162 -1.654 H5 6V6 17 6V6 H6 H6 H 0 1 N N N 58.340 63.739 37.212 -4.692 5.401 -2.499 H6 6V6 18 6V6 H7 H7 H 0 1 N N N 58.269 62.390 36.028 -3.709 5.147 -3.961 H7 6V6 19 6V6 H11 H11 H 0 1 N N N 56.713 59.337 42.349 1.259 4.168 -1.492 H11 6V6 20 6V6 H12 H12 H 0 1 N N N 59.673 61.717 39.788 -2.170 3.247 -3.965 H12 6V6 21 6V6 H13 H13 H 0 1 N N N 60.084 63.784 35.694 -5.961 4.411 -4.265 H13 6V6 22 6V6 C6 C6 C 0 1 N N N ? ? ? 0.360 1.261 3.161 C6 6V6 23 6V6 O7 O7 O 0 1 N N N ? ? ? 2.223 0.979 1.620 O7 6V6 24 6V6 O9 O9 O 0 1 N N N ? ? ? -0.629 1.167 2.102 O9 6V6 25 6V6 C8 C8 C 0 1 N N N ? ? ? -1.822 0.646 2.427 C8 6V6 26 6V6 C9 C9 C 0 1 N N N ? ? ? -2.898 0.517 1.380 C9 6V6 27 6V6 C10 C10 C 0 1 N N N ? ? ? -4.149 -0.102 2.007 C10 6V6 28 6V6 C11 C11 C 0 1 N N N ? ? ? -5.241 -0.233 0.944 C11 6V6 29 6V6 C12 C12 C 0 1 N N N ? ? ? -6.492 -0.853 1.572 C12 6V6 30 6V6 C13 C13 C 0 1 N N N ? ? ? -7.584 -0.984 0.509 C13 6V6 31 6V6 C14 C14 C 0 1 N N N ? ? ? -8.835 -1.603 1.136 C14 6V6 32 6V6 C15 C15 C 0 1 N N N ? ? ? -9.928 -1.734 0.073 C15 6V6 33 6V6 C16 C16 C 0 1 N N N ? ? ? -11.178 -2.353 0.701 C16 6V6 34 6V6 C17 C17 C 0 1 N N N ? ? ? -12.271 -2.484 -0.362 C17 6V6 35 6V6 C18 C18 C 0 1 N N N ? ? ? -13.521 -3.103 0.265 C18 6V6 36 6V6 C19 C19 C 0 1 N N N ? ? ? -14.614 -3.234 -0.798 C19 6V6 37 6V6 C20 C20 C 0 1 N N N ? ? ? -15.864 -3.854 -0.170 C20 6V6 38 6V6 C21 C21 C 0 1 N N N ? ? ? -16.957 -3.985 -1.234 C21 6V6 39 6V6 C22 C22 C 0 1 N N N ? ? ? -18.207 -4.604 -0.606 C22 6V6 40 6V6 C23 C23 C 0 1 N N N ? ? ? -19.300 -4.735 -1.669 C23 6V6 41 6V6 O8 O8 O 0 1 N N N ? ? ? -2.034 0.280 3.559 O8 6V6 42 6V6 C24 C24 C 0 1 N N N ? ? ? 3.559 1.000 1.485 C24 6V6 43 6V6 O10 O10 O 0 1 N N N ? ? ? 4.223 1.742 2.169 O10 6V6 44 6V6 C25 C25 C 0 1 N N N ? ? ? 4.229 0.097 0.482 C25 6V6 45 6V6 C26 C26 C 0 1 N N N ? ? ? 5.743 0.316 0.530 C26 6V6 46 6V6 C27 C27 C 0 1 N N N ? ? ? 6.424 -0.600 -0.488 C27 6V6 47 6V6 C28 C28 C 0 1 N N N ? ? ? 7.937 -0.382 -0.440 C28 6V6 48 6V6 C29 C29 C 0 1 N N N ? ? ? 8.618 -1.298 -1.458 C29 6V6 49 6V6 C30 C30 C 0 1 N N N ? ? ? 10.131 -1.079 -1.410 C30 6V6 50 6V6 C31 C31 C 0 1 N N N ? ? ? 10.812 -1.996 -2.429 C31 6V6 51 6V6 C32 C32 C 0 1 N N N ? ? ? 12.303 -1.780 -2.381 C32 6V6 52 6V6 C33 C33 C 0 1 N N N ? ? ? 13.105 -2.796 -2.180 C33 6V6 53 6V6 C34 C34 C 0 1 N N N ? ? ? 14.596 -2.581 -2.132 C34 6V6 54 6V6 C35 C35 C 0 1 N N N ? ? ? 15.150 -3.137 -0.819 C35 6V6 55 6V6 C36 C36 C 0 1 N N N ? ? ? 16.663 -2.918 -0.770 C36 6V6 56 6V6 C37 C37 C 0 1 N N N ? ? ? 17.217 -3.474 0.543 C37 6V6 57 6V6 C38 C38 C 0 1 N N N ? ? ? 18.730 -3.256 0.592 C38 6V6 58 6V6 C39 C39 C 0 1 N N N ? ? ? 19.284 -3.812 1.905 C39 6V6 59 6V6 H9 H9 H 0 1 N N N ? ? ? 0.571 0.265 3.550 H9 6V6 60 6V6 H10 H10 H 0 1 N N N ? ? ? -0.026 1.890 3.964 H10 6V6 61 6V6 H16 H16 H 0 1 N N N ? ? ? -3.141 1.503 0.984 H16 6V6 62 6V6 H17 H17 H 0 1 N N N ? ? ? -2.544 -0.122 0.571 H17 6V6 63 6V6 H18 H18 H 0 1 N N N ? ? ? -3.907 -1.089 2.403 H18 6V6 64 6V6 H19 H19 H 0 1 N N N ? ? ? -4.504 0.536 2.816 H19 6V6 65 6V6 H20 H20 H 0 1 N N N ? ? ? -5.484 0.753 0.549 H20 6V6 66 6V6 H21 H21 H 0 1 N N N ? ? ? -4.887 -0.872 0.135 H21 6V6 67 6V6 H22 H22 H 0 1 N N N ? ? ? -6.250 -1.839 1.967 H22 6V6 68 6V6 H23 H23 H 0 1 N N N ? ? ? -6.847 -0.214 2.381 H23 6V6 69 6V6 H24 H24 H 0 1 N N N ? ? ? -7.827 0.003 0.113 H24 6V6 70 6V6 H25 H25 H 0 1 N N N ? ? ? -7.230 -1.622 -0.300 H25 6V6 71 6V6 H26 H26 H 0 1 N N N ? ? ? -8.593 -2.589 1.532 H26 6V6 72 6V6 H27 H27 H 0 1 N N N ? ? ? -9.190 -0.964 1.945 H27 6V6 73 6V6 H28 H28 H 0 1 N N N ? ? ? -10.170 -0.748 -0.322 H28 6V6 74 6V6 H29 H29 H 0 1 N N N ? ? ? -9.573 -2.373 -0.736 H29 6V6 75 6V6 H30 H30 H 0 1 N N N ? ? ? -10.936 -3.339 1.096 H30 6V6 76 6V6 H31 H31 H 0 1 N N N ? ? ? -11.533 -1.714 1.510 H31 6V6 77 6V6 H32 H32 H 0 1 N N N ? ? ? -12.513 -1.498 -0.758 H32 6V6 78 6V6 H33 H33 H 0 1 N N N ? ? ? -11.916 -3.123 -1.171 H33 6V6 79 6V6 H34 H34 H 0 1 N N N ? ? ? -13.279 -4.090 0.661 H34 6V6 80 6V6 H35 H35 H 0 1 N N N ? ? ? -13.876 -2.465 1.074 H35 6V6 81 6V6 H36 H36 H 0 1 N N N ? ? ? -14.856 -2.248 -1.194 H36 6V6 82 6V6 H37 H37 H 0 1 N N N ? ? ? -14.259 -3.873 -1.607 H37 6V6 83 6V6 H38 H38 H 0 1 N N N ? ? ? -15.622 -4.840 0.225 H38 6V6 84 6V6 H39 H39 H 0 1 N N N ? ? ? -16.219 -3.215 0.638 H39 6V6 85 6V6 H40 H40 H 0 1 N N N ? ? ? -17.199 -2.998 -1.629 H40 6V6 86 6V6 H41 H41 H 0 1 N N N ? ? ? -16.602 -4.623 -2.042 H41 6V6 87 6V6 H42 H42 H 0 1 N N N ? ? ? -17.965 -5.590 -0.211 H42 6V6 88 6V6 H43 H43 H 0 1 N N N ? ? ? -18.562 -3.965 0.203 H43 6V6 89 6V6 H44 H44 H 0 1 N N N ? ? ? -20.191 -5.176 -1.222 H44 6V6 90 6V6 H45 H45 H 0 1 N N N ? ? ? -19.542 -3.749 -2.065 H45 6V6 91 6V6 H46 H46 H 0 1 N N N ? ? ? -18.945 -5.374 -2.478 H46 6V6 92 6V6 H47 H47 H 0 1 N N N ? ? ? 4.004 -0.942 0.721 H47 6V6 93 6V6 H48 H48 H 0 1 N N N ? ? ? 3.861 0.328 -0.518 H48 6V6 94 6V6 H49 H49 H 0 1 N N N ? ? ? 5.968 1.355 0.291 H49 6V6 95 6V6 H50 H50 H 0 1 N N N ? ? ? 6.111 0.085 1.530 H50 6V6 96 6V6 H51 H51 H 0 1 N N N ? ? ? 6.199 -1.640 -0.249 H51 6V6 97 6V6 H52 H52 H 0 1 N N N ? ? ? 6.055 -0.370 -1.488 H52 6V6 98 6V6 H53 H53 H 0 1 N N N ? ? ? 8.162 0.658 -0.679 H53 6V6 99 6V6 H54 H54 H 0 1 N N N ? ? ? 8.306 -0.613 0.560 H54 6V6 100 6V6 H55 H55 H 0 1 N N N ? ? ? 8.393 -2.338 -1.219 H55 6V6 101 6V6 H56 H56 H 0 1 N N N ? ? ? 8.249 -1.067 -2.458 H56 6V6 102 6V6 H57 H57 H 0 1 N N N ? ? ? 10.356 -0.040 -1.649 H57 6V6 103 6V6 H58 H58 H 0 1 N N N ? ? ? 10.500 -1.310 -0.410 H58 6V6 104 6V6 H59 H59 H 0 1 N N N ? ? ? 10.587 -3.035 -2.190 H59 6V6 105 6V6 H60 H60 H 0 1 N N N ? ? ? 10.443 -1.765 -3.428 H60 6V6 106 6V6 H61 H61 H 0 1 N N N ? ? ? 12.709 -0.789 -2.512 H61 6V6 107 6V6 H62 H62 H 0 1 N N N ? ? ? 12.698 -3.788 -2.049 H62 6V6 108 6V6 H63 H63 H 0 1 N N N ? ? ? 15.064 -3.095 -2.971 H63 6V6 109 6V6 H64 H64 H 0 1 N N N ? ? ? 14.811 -1.514 -2.195 H64 6V6 110 6V6 H65 H65 H 0 1 N N N ? ? ? 14.681 -2.622 0.020 H65 6V6 111 6V6 H66 H66 H 0 1 N N N ? ? ? 14.934 -4.204 -0.757 H66 6V6 112 6V6 H67 H67 H 0 1 N N N ? ? ? 17.132 -3.433 -1.609 H67 6V6 113 6V6 H68 H68 H 0 1 N N N ? ? ? 16.878 -1.851 -0.833 H68 6V6 114 6V6 H69 H69 H 0 1 N N N ? ? ? 16.748 -2.960 1.382 H69 6V6 115 6V6 H70 H70 H 0 1 N N N ? ? ? 17.002 -4.541 0.605 H70 6V6 116 6V6 H71 H71 H 0 1 N N N ? ? ? 19.199 -3.770 -0.247 H71 6V6 117 6V6 H72 H72 H 0 1 N N N ? ? ? 18.945 -2.189 0.529 H72 6V6 118 6V6 H73 H73 H 0 1 N N N ? ? ? 18.816 -3.297 2.744 H73 6V6 119 6V6 H74 H74 H 0 1 N N N ? ? ? 19.069 -4.878 1.967 H74 6V6 120 6V6 H75 H75 H 0 1 N N N ? ? ? 20.362 -3.656 1.940 H75 6V6 121 6V6 H8 H8 H 0 1 N N N ? ? ? 2.357 2.028 3.418 H8 6V6 122 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6V6 O6 C5 SING N N 1 6V6 C5 C4 SING N N 2 6V6 C4 C3 SING N N 3 6V6 C4 O5 SING N N 4 6V6 C3 O4 SING N N 5 6V6 C1 C2 SING N N 6 6V6 O1 C2 SING N N 7 6V6 O1 P1 SING N N 8 6V6 O4 P1 SING N N 9 6V6 P1 O3 DOUB N N 10 6V6 P1 O2 SING N N 11 6V6 C2 H1 SING N N 12 6V6 C2 H2 SING N N 13 6V6 C3 H3 SING N N 14 6V6 C3 H4 SING N N 15 6V6 C4 H5 SING N N 16 6V6 C5 H6 SING N N 17 6V6 C5 H7 SING N N 18 6V6 O2 H11 SING N N 19 6V6 O5 H12 SING N N 20 6V6 O6 H13 SING N N 21 6V6 C1 C6 SING N N 22 6V6 C1 O7 SING N N 23 6V6 C6 O9 SING N N 24 6V6 O9 C8 SING N N 25 6V6 C8 C9 SING N N 26 6V6 C9 C10 SING N N 27 6V6 C10 C11 SING N N 28 6V6 C11 C12 SING N N 29 6V6 C12 C13 SING N N 30 6V6 C13 C14 SING N N 31 6V6 C14 C15 SING N N 32 6V6 C15 C16 SING N N 33 6V6 C16 C17 SING N N 34 6V6 C17 C18 SING N N 35 6V6 C18 C19 SING N N 36 6V6 C19 C20 SING N N 37 6V6 C20 C21 SING N N 38 6V6 C21 C22 SING N N 39 6V6 C22 C23 SING N N 40 6V6 C8 O8 DOUB N N 41 6V6 O7 C24 SING N N 42 6V6 C24 O10 DOUB N N 43 6V6 C24 C25 SING N N 44 6V6 C25 C26 SING N N 45 6V6 C26 C27 SING N N 46 6V6 C27 C28 SING N N 47 6V6 C28 C29 SING N N 48 6V6 C29 C30 SING N N 49 6V6 C30 C31 SING N N 50 6V6 C31 C32 SING N N 51 6V6 C32 C33 DOUB N N 52 6V6 C33 C34 SING N N 53 6V6 C34 C35 SING N N 54 6V6 C35 C36 SING N N 55 6V6 C36 C37 SING N N 56 6V6 C37 C38 SING N N 57 6V6 C38 C39 SING N N 58 6V6 C6 H9 SING N N 59 6V6 C6 H10 SING N N 60 6V6 C9 H16 SING N N 61 6V6 C9 H17 SING N N 62 6V6 C10 H18 SING N N 63 6V6 C10 H19 SING N N 64 6V6 C11 H20 SING N N 65 6V6 C11 H21 SING N N 66 6V6 C12 H22 SING N N 67 6V6 C12 H23 SING N N 68 6V6 C13 H24 SING N N 69 6V6 C13 H25 SING N N 70 6V6 C14 H26 SING N N 71 6V6 C14 H27 SING N N 72 6V6 C15 H28 SING N N 73 6V6 C15 H29 SING N N 74 6V6 C16 H30 SING N N 75 6V6 C16 H31 SING N N 76 6V6 C17 H32 SING N N 77 6V6 C17 H33 SING N N 78 6V6 C18 H34 SING N N 79 6V6 C18 H35 SING N N 80 6V6 C19 H36 SING N N 81 6V6 C19 H37 SING N N 82 6V6 C20 H38 SING N N 83 6V6 C20 H39 SING N N 84 6V6 C21 H40 SING N N 85 6V6 C21 H41 SING N N 86 6V6 C22 H42 SING N N 87 6V6 C22 H43 SING N N 88 6V6 C23 H44 SING N N 89 6V6 C23 H45 SING N N 90 6V6 C23 H46 SING N N 91 6V6 C25 H47 SING N N 92 6V6 C25 H48 SING N N 93 6V6 C26 H49 SING N N 94 6V6 C26 H50 SING N N 95 6V6 C27 H51 SING N N 96 6V6 C27 H52 SING N N 97 6V6 C28 H53 SING N N 98 6V6 C28 H54 SING N N 99 6V6 C29 H55 SING N N 100 6V6 C29 H56 SING N N 101 6V6 C30 H57 SING N N 102 6V6 C30 H58 SING N N 103 6V6 C31 H59 SING N N 104 6V6 C31 H60 SING N N 105 6V6 C32 H61 SING N N 106 6V6 C33 H62 SING N N 107 6V6 C34 H63 SING N N 108 6V6 C34 H64 SING N N 109 6V6 C35 H65 SING N N 110 6V6 C35 H66 SING N N 111 6V6 C36 H67 SING N N 112 6V6 C36 H68 SING N N 113 6V6 C37 H69 SING N N 114 6V6 C37 H70 SING N N 115 6V6 C38 H71 SING N N 116 6V6 C38 H72 SING N N 117 6V6 C39 H73 SING N N 118 6V6 C39 H74 SING N N 119 6V6 C39 H75 SING N N 120 6V6 C1 H8 SING N N 121 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6V6 InChI InChI 1.03 "InChI=1S/C38H73O10P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-37(41)45-33-36(34-47-49(43,44)46-32-35(40)31-39)48-38(42)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h14,16,35-36,39-40H,3-13,15,17-34H2,1-2H3,(H,43,44)/t35-,36?/m1/s1" 6V6 InChIKey InChI 1.03 NOFOTAHTYLXZNV-RERZGLEZSA-N 6V6 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OCC(CO[P](O)(=O)OC[C@H](O)CO)OC(=O)CCCCCCCC=CCCCCCC" 6V6 SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OCC(CO[P](O)(=O)OC[CH](O)CO)OC(=O)CCCCCCCC=CCCCCCC" 6V6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCCCCCCCCCCCCCCC(=O)OC[C@@H](COP(=O)(O)OC[C@@H](CO)O)OC(=O)CCCCCCCC=CCCCCCC" 6V6 SMILES "OpenEye OEToolkits" 2.0.5 "CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCC(CO)O)OC(=O)CCCCCCCC=CCCCCCC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6V6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "[(2~{S})-3-[[(2~{R})-2,3-bis(oxidanyl)propoxy]-oxidanyl-phosphoryl]oxy-2-hexadec-9-enoyloxy-propyl] hexadecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6V6 "Create component" 2016-07-01 RCSB 6V6 "Initial release" 2016-11-02 RCSB #