data_6Z4 # _chem_comp.id 6Z4 _chem_comp.name "(3~{S})-8-[2-azanyl-6-[(1~{R})-1-(4-chloranyl-2-phenyl-phenyl)-2,2,2-tris(fluoranyl)ethoxy]pyrimidin-4-yl]-2,8-diazaspiro[4.5]decane-3-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 Cl F3 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-07-27 _chem_comp.pdbx_modified_date 2017-01-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 561.983 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6Z4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5L01 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6Z4 C1 C1 C 0 1 Y N N 47.536 -0.619 74.917 0.510 2.323 0.101 C1 6Z4 1 6Z4 C2 C2 C 0 1 Y N N 48.910 1.092 75.750 1.955 0.657 -0.580 C2 6Z4 2 6Z4 C12 C3 C 0 1 Y N N 48.137 1.146 76.898 0.863 -0.164 -0.851 C12 6Z4 3 6Z4 C13 C4 C 0 1 Y N N 47.073 0.246 76.983 -0.413 0.335 -0.623 C13 6Z4 4 6Z4 C14 C5 C 0 1 N N R 45.625 -1.116 78.384 -2.781 0.156 -0.612 C14 6Z4 5 6Z4 C22 C6 C 0 1 Y N N 43.617 -2.468 76.117 -5.059 0.775 1.060 C22 6Z4 6 6Z4 C23 C7 C 0 1 Y N N 44.186 -3.713 76.366 -4.064 1.417 1.795 C23 6Z4 7 6Z4 C25 C8 C 0 1 Y N N 44.213 -4.230 73.963 -5.445 3.367 1.951 C25 6Z4 8 6Z4 C26 C9 C 0 1 Y N N 43.675 -2.990 73.671 -6.440 2.731 1.230 C26 6Z4 9 6Z4 N1 N1 N 0 1 N N N 47.109 -1.514 73.953 0.326 3.602 0.597 N1 6Z4 10 6Z4 N2 N2 N 0 1 Y N N 48.599 0.194 74.766 1.741 1.883 -0.109 N2 6Z4 11 6Z4 N3 N3 N 0 1 N N N 50.031 1.910 75.602 3.246 0.201 -0.792 N3 6Z4 12 6Z4 CE1 C10 C 0 1 N N N 50.329 3.001 76.475 4.232 1.231 -0.439 CE1 6Z4 13 6Z4 CD1 C11 C 0 1 N N N 51.171 4.037 75.752 5.633 0.753 -0.834 CD1 6Z4 14 6Z4 CG C12 C 0 1 N N N 52.447 3.494 75.159 5.937 -0.561 -0.119 CG 6Z4 15 6Z4 CD2 C13 C 0 1 N N N 52.029 2.339 74.265 4.867 -1.601 -0.438 CD2 6Z4 16 6Z4 CE2 C14 C 0 1 N N N 51.226 1.285 75.006 3.491 -1.046 -0.057 CE2 6Z4 17 6Z4 C8 C15 C 0 1 N N N 53.450 3.072 76.248 6.016 -0.331 1.401 C8 6Z4 18 6Z4 N N4 N 0 1 N N N 54.640 3.916 76.059 7.465 -0.144 1.673 N 6Z4 19 6Z4 CA C16 C 0 1 N N S 54.573 4.286 74.620 8.136 -1.127 0.784 CA 6Z4 20 6Z4 C C17 C 0 1 N N N 55.447 5.471 74.215 9.566 -0.722 0.536 C 6Z4 21 6Z4 O O1 O 0 1 N N N 55.520 5.766 72.981 9.916 0.416 0.743 O 6Z4 22 6Z4 O2 O2 O 0 1 N N N 55.993 6.070 75.203 10.451 -1.624 0.084 O2 6Z4 23 6Z4 CB C18 C 0 1 N N N 53.125 4.567 74.349 7.324 -1.081 -0.530 CB 6Z4 24 6Z4 OH O3 O 0 1 N N N 46.311 0.204 78.170 -1.504 -0.430 -0.873 OH 6Z4 25 6Z4 C15 C19 C 0 1 N N N 45.937 -1.696 79.781 -3.281 0.870 -1.870 C15 6Z4 26 6Z4 F1 F1 F 0 1 N N N 45.177 -2.812 79.921 -3.396 -0.052 -2.915 F1 6Z4 27 6Z4 F2 F2 F 0 1 N N N 47.233 -2.066 79.974 -4.531 1.444 -1.614 F2 6Z4 28 6Z4 F3 F3 F 0 1 N N N 45.677 -0.854 80.828 -2.373 1.872 -2.229 F3 6Z4 29 6Z4 C16 C20 C 0 1 Y N N 44.138 -0.865 78.095 -3.759 -0.922 -0.224 C16 6Z4 30 6Z4 C17 C21 C 0 1 Y N N 43.638 0.169 78.858 -3.571 -2.217 -0.664 C17 6Z4 31 6Z4 C18 C22 C 0 1 Y N N 42.375 0.640 78.772 -4.468 -3.208 -0.310 C18 6Z4 32 6Z4 C19 C23 C 0 1 Y N N 41.544 0.093 77.870 -5.558 -2.909 0.488 C19 6Z4 33 6Z4 CL1 CL1 CL 0 0 N N N 39.988 0.776 77.815 -6.680 -4.159 0.928 CL1 6Z4 34 6Z4 C20 C24 C 0 1 Y N N 41.998 -0.897 77.045 -5.756 -1.616 0.934 C20 6Z4 35 6Z4 C21 C25 C 0 1 Y N N 43.281 -1.440 77.138 -4.852 -0.615 0.584 C21 6Z4 36 6Z4 C24 C26 C 0 1 Y N N 44.474 -4.577 75.298 -4.262 2.710 2.236 C24 6Z4 37 6Z4 C27 C27 C 0 1 Y N N 43.389 -2.146 74.753 -6.251 1.440 0.780 C27 6Z4 38 6Z4 N5 N5 N 0 1 Y N N 46.737 -0.603 75.966 -0.551 1.568 -0.146 N5 6Z4 39 6Z4 H1 H1 H 0 1 N N N 48.347 1.850 77.689 1.005 -1.164 -1.234 H1 6Z4 40 6Z4 H2 H2 H 0 1 N N N 46.001 -1.827 77.633 -2.691 0.875 0.203 H2 6Z4 41 6Z4 H3 H3 H 0 1 N N N 44.406 -4.014 77.380 -3.141 0.904 2.019 H3 6Z4 42 6Z4 H4 H4 H 0 1 N N N 44.431 -4.928 73.168 -5.596 4.379 2.298 H4 6Z4 43 6Z4 H5 H5 H 0 1 N N N 43.483 -2.685 72.653 -7.362 3.249 1.011 H5 6Z4 44 6Z4 H6 H6 H 0 1 N N N 47.706 -1.454 73.153 -0.570 3.935 0.760 H6 6Z4 45 6Z4 H7 H7 H 0 1 N N N 47.140 -2.442 74.323 1.094 4.165 0.783 H7 6Z4 46 6Z4 H8 H8 H 0 1 N N N 49.390 3.466 76.810 4.000 2.154 -0.972 H8 6Z4 47 6Z4 H9 H9 H 0 1 N N N 50.884 2.627 77.348 4.199 1.413 0.635 H9 6Z4 48 6Z4 H10 H10 H 0 1 N N N 51.434 4.829 76.469 5.674 0.599 -1.912 H10 6Z4 49 6Z4 H11 H11 H 0 1 N N N 50.567 4.465 74.938 6.368 1.503 -0.545 H11 6Z4 50 6Z4 H12 H12 H 0 1 N N N 52.934 1.867 73.854 4.886 -1.827 -1.505 H12 6Z4 51 6Z4 H13 H13 H 0 1 N N N 51.415 2.735 73.442 5.063 -2.510 0.130 H13 6Z4 52 6Z4 H14 H14 H 0 1 N N N 50.917 0.498 74.303 3.464 -0.848 1.014 H14 6Z4 53 6Z4 H15 H15 H 0 1 N N N 51.845 0.844 75.801 2.722 -1.775 -0.312 H15 6Z4 54 6Z4 H16 H16 H 0 1 N N N 53.020 3.237 77.247 5.458 0.562 1.680 H16 6Z4 55 6Z4 H17 H17 H 0 1 N N N 53.713 2.010 76.133 5.635 -1.200 1.937 H17 6Z4 56 6Z4 H18 H18 H 0 1 N N N 55.476 3.406 76.259 7.678 -0.330 2.642 H18 6Z4 57 6Z4 H20 H20 H 0 1 N N N 54.877 3.416 74.019 8.095 -2.125 1.221 H20 6Z4 58 6Z4 H21 H21 H 0 1 N N N 56.494 6.812 74.886 11.356 -1.317 -0.060 H21 6Z4 59 6Z4 H22 H22 H 0 1 N N N 52.840 5.571 74.696 7.243 -2.079 -0.961 H22 6Z4 60 6Z4 H23 H23 H 0 1 N N N 52.891 4.469 73.279 7.791 -0.398 -1.240 H23 6Z4 61 6Z4 H24 H24 H 0 1 N N N 44.301 0.634 79.573 -2.721 -2.456 -1.287 H24 6Z4 62 6Z4 H25 H25 H 0 1 N N N 42.040 1.440 79.416 -4.317 -4.220 -0.657 H25 6Z4 63 6Z4 H26 H26 H 0 1 N N N 41.333 -1.278 76.284 -6.605 -1.383 1.559 H26 6Z4 64 6Z4 H27 H27 H 0 1 N N N 44.911 -5.541 75.510 -3.492 3.209 2.805 H27 6Z4 65 6Z4 H28 H28 H 0 1 N N N 42.963 -1.178 74.533 -7.028 0.944 0.217 H28 6Z4 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6Z4 O C DOUB N N 1 6Z4 C26 C25 DOUB Y N 2 6Z4 C26 C27 SING Y N 3 6Z4 N1 C1 SING N N 4 6Z4 C25 C24 SING Y N 5 6Z4 C CA SING N N 6 6Z4 C O2 SING N N 7 6Z4 CD2 CE2 SING N N 8 6Z4 CD2 CG SING N N 9 6Z4 CB CA SING N N 10 6Z4 CB CG SING N N 11 6Z4 CA N SING N N 12 6Z4 C27 C22 DOUB Y N 13 6Z4 N2 C1 DOUB Y N 14 6Z4 N2 C2 SING Y N 15 6Z4 C1 N5 SING Y N 16 6Z4 CE2 N3 SING N N 17 6Z4 CG CD1 SING N N 18 6Z4 CG C8 SING N N 19 6Z4 C24 C23 DOUB Y N 20 6Z4 N3 C2 SING N N 21 6Z4 N3 CE1 SING N N 22 6Z4 C2 C12 DOUB Y N 23 6Z4 CD1 CE1 SING N N 24 6Z4 N5 C13 DOUB Y N 25 6Z4 N C8 SING N N 26 6Z4 C22 C23 SING Y N 27 6Z4 C22 C21 SING N N 28 6Z4 C12 C13 SING Y N 29 6Z4 C13 OH SING N N 30 6Z4 C20 C21 DOUB Y N 31 6Z4 C20 C19 SING Y N 32 6Z4 C21 C16 SING Y N 33 6Z4 CL1 C19 SING N N 34 6Z4 C19 C18 DOUB Y N 35 6Z4 C16 C14 SING N N 36 6Z4 C16 C17 DOUB Y N 37 6Z4 OH C14 SING N N 38 6Z4 C14 C15 SING N N 39 6Z4 C18 C17 SING Y N 40 6Z4 C15 F1 SING N N 41 6Z4 C15 F2 SING N N 42 6Z4 C15 F3 SING N N 43 6Z4 C12 H1 SING N N 44 6Z4 C14 H2 SING N N 45 6Z4 C23 H3 SING N N 46 6Z4 C25 H4 SING N N 47 6Z4 C26 H5 SING N N 48 6Z4 N1 H6 SING N N 49 6Z4 N1 H7 SING N N 50 6Z4 CE1 H8 SING N N 51 6Z4 CE1 H9 SING N N 52 6Z4 CD1 H10 SING N N 53 6Z4 CD1 H11 SING N N 54 6Z4 CD2 H12 SING N N 55 6Z4 CD2 H13 SING N N 56 6Z4 CE2 H14 SING N N 57 6Z4 CE2 H15 SING N N 58 6Z4 C8 H16 SING N N 59 6Z4 C8 H17 SING N N 60 6Z4 N H18 SING N N 61 6Z4 CA H20 SING N N 62 6Z4 O2 H21 SING N N 63 6Z4 CB H22 SING N N 64 6Z4 CB H23 SING N N 65 6Z4 C17 H24 SING N N 66 6Z4 C18 H25 SING N N 67 6Z4 C20 H26 SING N N 68 6Z4 C24 H27 SING N N 69 6Z4 C27 H28 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6Z4 InChI InChI 1.03 "InChI=1S/C27H27ClF3N5O3/c28-17-6-7-18(19(12-17)16-4-2-1-3-5-16)23(27(29,30)31)39-22-13-21(34-25(32)35-22)36-10-8-26(9-11-36)14-20(24(37)38)33-15-26/h1-7,12-13,20,23,33H,8-11,14-15H2,(H,37,38)(H2,32,34,35)/t20-,23+/m0/s1" 6Z4 InChIKey InChI 1.03 ZNSPHKJFQDEABI-NZQKXSOJSA-N 6Z4 SMILES_CANONICAL CACTVS 3.385 "Nc1nc(O[C@H](c2ccc(Cl)cc2c3ccccc3)C(F)(F)F)cc(n1)N4CCC5(CC4)CN[C@@H](C5)C(O)=O" 6Z4 SMILES CACTVS 3.385 "Nc1nc(O[CH](c2ccc(Cl)cc2c3ccccc3)C(F)(F)F)cc(n1)N4CCC5(CC4)CN[CH](C5)C(O)=O" 6Z4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1ccc(cc1)c2cc(ccc2[C@H](C(F)(F)F)Oc3cc(nc(n3)N)N4CCC5(CC4)C[C@H](NC5)C(=O)O)Cl" 6Z4 SMILES "OpenEye OEToolkits" 2.0.5 "c1ccc(cc1)c2cc(ccc2C(C(F)(F)F)Oc3cc(nc(n3)N)N4CCC5(CC4)CC(NC5)C(=O)O)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6Z4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "(3~{S})-8-[2-azanyl-6-[(1~{R})-1-(4-chloranyl-2-phenyl-phenyl)-2,2,2-tris(fluoranyl)ethoxy]pyrimidin-4-yl]-2,8-diazaspiro[4.5]decane-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6Z4 "Create component" 2016-07-27 RCSB 6Z4 "Initial release" 2017-01-25 RCSB #