data_7CY # _chem_comp.id 7CY _chem_comp.name "(1R,2S,3R,5R)-3-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)cyclopentane-1,2-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Aristeromycin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-10-05 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 265.269 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7CY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5TJ9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7CY N1 N1 N 0 1 Y N N 66.977 31.968 44.140 -4.374 -0.746 0.651 N1 7CY 1 7CY C2 C1 C 0 1 Y N N 66.479 33.068 44.742 -3.437 -1.532 1.147 C2 7CY 2 7CY C4 C2 C 0 1 Y N N 64.771 33.321 43.162 -1.745 -0.229 0.297 C4 7CY 3 7CY C5 C3 C 0 1 Y N N 65.246 32.135 42.445 -2.704 0.639 -0.251 C5 7CY 4 7CY C6 C4 C 0 1 Y N N 66.433 31.453 43.012 -4.062 0.341 -0.048 C6 7CY 5 7CY C8 C5 C 0 1 Y N N 63.506 32.972 41.440 -0.751 1.424 -0.770 C8 7CY 6 7CY "O2'" O1 O 0 1 N N N 63.731 37.062 41.914 1.272 -1.866 -1.485 "O2'" 7CY 7 7CY "C2'" C6 C 0 1 N N S 62.775 35.997 41.818 1.608 -0.575 -0.974 "C2'" 7CY 8 7CY "C3'" C7 C 0 1 N N R 61.342 36.497 41.979 3.074 -0.549 -0.494 "C3'" 7CY 9 7CY "O3'" O2 O 0 1 N N N 61.263 37.934 41.947 3.514 -1.874 -0.192 "O3'" 7CY 10 7CY "C4'" C8 C 0 1 N N R 60.862 35.910 43.321 3.106 0.320 0.776 "C4'" 7CY 11 7CY "C5'" C9 C 0 1 N N N 59.356 35.701 43.596 4.021 1.527 0.562 "C5'" 7CY 12 7CY "O5'" O3 O 0 1 N N N 59.215 35.430 44.998 5.371 1.082 0.418 "O5'" 7CY 13 7CY "C1'" C10 C 0 1 N N R 62.984 34.974 42.930 0.786 -0.266 0.302 "C1'" 7CY 14 7CY "C6'" C11 C 0 1 N N N 61.612 34.600 43.431 1.658 0.791 1.024 "C6'" 7CY 15 7CY N9 N2 N 0 1 Y N N 63.729 33.775 42.499 -0.523 0.292 -0.046 N9 7CY 16 7CY N7 N3 N 0 1 Y N N 64.427 31.971 41.392 -2.031 1.626 -0.890 N7 7CY 17 7CY N3 N4 N 0 1 Y N N 65.410 33.734 44.275 -2.153 -1.292 0.983 N3 7CY 18 7CY N6 N5 N 0 1 N N N 66.962 30.348 42.440 -5.052 1.159 -0.564 N6 7CY 19 7CY H1 H1 H 0 1 N N N 66.961 33.429 45.639 -3.734 -2.405 1.710 H1 7CY 20 7CY H2 H2 H 0 1 N N N 62.706 33.105 40.727 0.018 2.060 -1.184 H2 7CY 21 7CY H3 H3 H 0 1 N N N 64.608 36.712 41.809 1.798 -2.135 -2.250 H3 7CY 22 7CY H4 H4 H 0 1 N N N 62.868 35.491 40.846 1.441 0.191 -1.732 H4 7CY 23 7CY H5 H5 H 0 1 N N N 60.727 36.071 41.172 3.711 -0.110 -1.263 H5 7CY 24 7CY H6 H6 H 0 1 N N N 60.358 38.204 42.050 3.497 -2.476 -0.948 H6 7CY 25 7CY H7 H7 H 0 1 N N N 61.243 36.571 44.114 3.457 -0.270 1.623 H7 7CY 26 7CY H8 H8 H 0 1 N N N 58.795 36.608 43.329 3.716 2.060 -0.338 H8 7CY 27 7CY H9 H9 H 0 1 N N N 58.980 34.851 43.008 3.948 2.194 1.421 H9 7CY 28 7CY H10 H10 H 0 1 N N N 58.297 35.296 45.204 6.008 1.796 0.279 H10 7CY 29 7CY H11 H11 H 0 1 N N N 63.534 35.461 43.749 0.675 -1.160 0.916 H11 7CY 30 7CY H12 H12 H 0 1 N N N 61.155 33.825 42.799 1.439 0.803 2.091 H12 7CY 31 7CY H13 H13 H 0 1 N N N 61.650 34.249 44.473 1.499 1.778 0.590 H13 7CY 32 7CY H14 H14 H 0 1 N N N 67.748 30.039 42.975 -4.812 1.949 -1.074 H14 7CY 33 7CY H15 H15 H 0 1 N N N 66.272 29.624 42.412 -5.986 0.942 -0.417 H15 7CY 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7CY N7 C8 DOUB Y N 1 7CY N7 C5 SING Y N 2 7CY C8 N9 SING Y N 3 7CY "C2'" "O2'" SING N N 4 7CY "C2'" "C3'" SING N N 5 7CY "C2'" "C1'" SING N N 6 7CY "O3'" "C3'" SING N N 7 7CY "C3'" "C4'" SING N N 8 7CY N6 C6 SING N N 9 7CY C5 C6 DOUB Y N 10 7CY C5 C4 SING Y N 11 7CY N9 "C1'" SING N N 12 7CY N9 C4 SING Y N 13 7CY "C1'" "C6'" SING N N 14 7CY C6 N1 SING Y N 15 7CY C4 N3 DOUB Y N 16 7CY "C4'" "C6'" SING N N 17 7CY "C4'" "C5'" SING N N 18 7CY "C5'" "O5'" SING N N 19 7CY N1 C2 DOUB Y N 20 7CY N3 C2 SING Y N 21 7CY C2 H1 SING N N 22 7CY C8 H2 SING N N 23 7CY "O2'" H3 SING N N 24 7CY "C2'" H4 SING N N 25 7CY "C3'" H5 SING N N 26 7CY "O3'" H6 SING N N 27 7CY "C4'" H7 SING N N 28 7CY "C5'" H8 SING N N 29 7CY "C5'" H9 SING N N 30 7CY "O5'" H10 SING N N 31 7CY "C1'" H11 SING N N 32 7CY "C6'" H12 SING N N 33 7CY "C6'" H13 SING N N 34 7CY N6 H14 SING N N 35 7CY N6 H15 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7CY SMILES ACDLabs 12.01 "n1cnc2c(c1N)ncn2C3C(O)C(C(C3)CO)O" 7CY InChI InChI 1.03 "InChI=1S/C11H15N5O3/c12-10-7-11(14-3-13-10)16(4-15-7)6-1-5(2-17)8(18)9(6)19/h3-6,8-9,17-19H,1-2H2,(H2,12,13,14)/t5-,6-,8-,9+/m1/s1" 7CY InChIKey InChI 1.03 UGRNVLGKAGREKS-GCXDCGAKSA-N 7CY SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3C[C@H](CO)[C@@H](O)[C@H]3O" 7CY SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3C[CH](CO)[CH](O)[CH]3O" 7CY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@@H]([C@H]([C@H]3O)O)CO)N" 7CY SMILES "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)C3CC(C(C3O)O)CO)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7CY "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,3R,5R)-3-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)cyclopentane-1,2-diol" 7CY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{R},2~{S},3~{R},5~{R})-3-(6-aminopurin-9-yl)-5-(hydroxymethyl)cyclopentane-1,2-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7CY "Create component" 2016-10-05 RCSB 7CY "Initial release" 2016-10-19 RCSB 7CY "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 7CY _pdbx_chem_comp_synonyms.name Aristeromycin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##